Wall clock time and date at job start Tue Mar 31 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 H 1.09003 * 109.47046 * 308.30473 * 3 2 1 5 5 C 1.52998 * 109.47342 * 188.30547 * 3 2 1 6 6 C 1.52999 * 109.46971 * 68.30103 * 3 2 1 7 7 H 1.09003 * 109.46959 * 51.87222 * 6 3 2 8 8 C 1.50702 * 109.47208 * 171.86560 * 6 3 2 9 9 O 1.21277 * 119.99989 * 103.87522 * 8 6 3 10 10 N 1.34781 * 120.00272 * 283.88514 * 8 6 3 11 11 C 1.46492 * 120.00078 * 184.82792 * 10 8 6 12 12 H 1.09007 * 109.47017 * 35.00176 * 11 10 8 13 13 C 1.52995 * 109.47363 * 274.99634 * 11 10 8 14 14 C 1.50704 * 109.46997 * 154.99658 * 11 10 8 15 15 H 1.08001 * 120.00061 * 34.35258 * 14 11 10 16 16 C 1.37875 * 120.00114 * 214.34688 * 14 11 10 17 17 N 1.31514 * 120.00200 * 183.82220 * 16 14 11 18 18 Si 1.86807 * 120.00071 * 3.82880 * 16 14 11 19 19 H 1.48497 * 109.47019 * 93.61857 * 18 16 14 20 20 H 1.48497 * 109.47089 * 213.62321 * 18 16 14 21 21 H 1.48498 * 109.46832 * 333.62080 * 18 16 14 22 22 C 1.50698 * 109.47525 * 291.86714 * 6 3 2 23 23 C 1.38234 * 119.99925 * 308.49543 * 22 6 3 24 24 C 1.38237 * 119.99640 * 179.80586 * 23 22 6 25 25 C 1.38236 * 120.00114 * 0.40054 * 24 23 22 26 26 C 1.38235 * 120.00077 * 359.85739 * 25 24 23 27 27 C 1.38234 * 119.99937 * 128.76639 * 22 6 3 28 28 H 1.08991 * 109.47359 * 44.92501 * 1 2 3 29 29 H 1.09002 * 109.47068 * 284.91928 * 1 2 3 30 30 H 1.09004 * 109.46881 * 164.92601 * 1 2 3 31 31 H 1.08996 * 109.47610 * 120.00331 * 2 1 3 32 32 H 1.09003 * 109.46769 * 240.00368 * 2 1 3 33 33 H 1.09005 * 109.47112 * 57.48620 * 5 3 2 34 34 H 1.08996 * 109.47248 * 177.49010 * 5 3 2 35 35 H 1.09001 * 109.46779 * 297.48817 * 5 3 2 36 36 H 0.96999 * 119.99371 * 4.82733 * 10 8 6 37 37 H 1.09006 * 109.47186 * 64.96761 * 13 11 10 38 38 H 1.09001 * 109.47536 * 184.95881 * 13 11 10 39 39 H 1.08992 * 109.47247 * 304.96702 * 13 11 10 40 40 H 0.97001 * 120.00632 * 180.02562 * 17 16 14 41 41 H 1.07999 * 119.99905 * 359.97438 * 23 22 6 42 42 H 1.08000 * 119.99794 * 180.23383 * 24 23 22 43 43 H 1.07997 * 119.99716 * 179.83200 * 25 24 23 44 44 H 1.07996 * 120.00147 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.00025 * 359.97438 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5605 1.9974 -0.8065 5 6 3.5557 1.4476 -0.2084 6 6 1.7071 2.1011 1.3403 7 1 2.0631 1.4691 2.1540 8 6 2.3794 3.4475 1.4191 9 8 1.7299 4.4597 1.2623 10 7 3.7024 3.5270 1.6636 11 6 4.3365 4.8350 1.8453 12 1 3.6446 5.5067 2.3536 13 6 4.7029 5.4183 0.4793 14 6 5.5845 4.6773 2.6754 15 1 6.1857 3.7850 2.5823 16 6 5.9586 5.6722 3.5535 17 7 7.0863 5.5691 4.2222 18 14 4.8637 7.1666 3.7934 19 1 3.9588 6.9369 4.9482 20 1 5.7066 8.3609 4.0550 21 1 4.0555 7.3900 2.5679 22 6 0.2150 2.2770 1.4568 23 6 -0.4897 2.8936 0.4399 24 6 -1.8590 3.0514 0.5450 25 6 -2.5224 2.6001 1.6707 26 6 -1.8169 1.9883 2.6900 27 6 -0.4482 1.8269 2.5830 28 1 -0.3633 0.7275 -0.7256 29 1 -0.3633 0.2646 0.9930 30 1 -0.3633 -0.9924 -0.2673 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.7958 0.9388 -1.1420 34 1 3.9129 2.4764 -0.2529 35 1 4.0382 0.9311 0.6214 36 1 4.2347 2.7180 1.7193 37 1 3.7930 5.6147 -0.0879 38 1 5.2529 6.3493 0.6173 39 1 5.3238 4.7068 -0.0649 40 1 7.3495 6.2689 4.8403 41 1 0.0291 3.2496 -0.4379 42 1 -2.4102 3.5297 -0.2511 43 1 -3.5918 2.7258 1.7540 44 1 -2.3351 1.6361 3.5696 45 1 0.1030 1.3487 3.3793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250569192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:01 Heat of formation + Delta-G solvation = -28.546738 kcal Electronic energy + Delta-G solvation = -24061.242370 eV Core-core repulsion = 20849.993103 eV Total energy + Delta-G solvation = -3211.249267 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45885 -38.45202 -36.32290 -34.89664 -32.39315 -31.60932 -30.80364 -30.70725 -29.32249 -26.80360 -25.29704 -23.53858 -22.63343 -21.99224 -20.96167 -19.81431 -19.46881 -17.41588 -16.89431 -16.13587 -15.57291 -15.19858 -14.86986 -14.53900 -14.29866 -13.97977 -13.63939 -13.40390 -13.24314 -12.97172 -12.81729 -12.58699 -12.55565 -12.31784 -12.12904 -11.85886 -11.50136 -11.29073 -11.11235 -11.05109 -10.96105 -10.86863 -10.70241 -10.62124 -10.53066 -10.41147 -9.84599 -9.16109 -9.10558 -8.70667 -8.69176 -8.37320 -8.00625 -6.23341 -4.26640 1.48129 1.56818 3.23974 3.30749 3.34231 3.42438 3.81967 4.17853 4.32673 4.65487 4.80775 4.81139 5.05662 5.08557 5.14164 5.21734 5.25902 5.37666 5.45463 5.54020 5.58790 5.63828 5.74757 5.75954 5.81225 5.93269 6.01222 6.07271 6.13917 6.19266 6.29394 6.31544 6.34812 6.41190 6.56141 6.58720 6.64165 6.70795 6.79058 6.96492 7.13279 7.20113 7.40755 7.58537 8.15217 8.59858 8.77505 9.02399 9.39309 10.88426 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018860 B = 0.005019 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.229789 B = 5577.878108 C = 6332.726955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.114 4.114 3 C -0.077 4.077 4 H 0.077 0.923 5 C -0.167 4.167 6 C -0.071 4.071 7 H 0.097 0.903 8 C 0.509 3.491 9 O -0.550 6.550 10 N -0.704 5.704 11 C 0.229 3.771 12 H 0.050 0.950 13 C -0.147 4.147 14 C -0.529 4.529 15 H 0.078 0.922 16 C 0.081 3.919 17 N -0.890 5.890 18 Si 0.871 3.129 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.257 1.257 22 C -0.043 4.043 23 C -0.084 4.084 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.124 4.124 27 C -0.119 4.119 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.394 0.606 37 H 0.029 0.971 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.267 0.733 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.380 -11.108 -7.527 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.151 4.151 3 C -0.096 4.096 4 H 0.095 0.905 5 C -0.224 4.224 6 C -0.092 4.092 7 H 0.115 0.885 8 C 0.294 3.706 9 O -0.429 6.429 10 N -0.354 5.354 11 C 0.127 3.873 12 H 0.068 0.932 13 C -0.206 4.206 14 C -0.567 4.567 15 H 0.096 0.904 16 C -0.123 4.123 17 N -0.526 5.526 18 Si 0.697 3.303 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.181 1.181 22 C -0.043 4.043 23 C -0.102 4.102 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.142 4.142 27 C -0.137 4.137 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.229 0.771 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.675 -10.264 -7.471 19.404 hybrid contribution -0.127 0.480 0.390 0.631 sum -14.802 -9.784 -7.081 19.105 Atomic orbital electron populations 1.22223 0.95816 1.00879 1.03167 1.21553 0.96127 0.95495 1.01929 1.21149 0.96804 0.96155 0.95491 0.90505 1.22196 0.94679 1.03657 1.01898 1.20525 0.92445 0.96209 1.00040 0.88500 1.20275 0.83015 0.90163 0.77182 1.90652 1.64532 1.37168 1.50507 1.46833 1.07324 1.11388 1.69827 1.19172 0.93327 0.81240 0.93568 0.93218 1.22219 0.99039 1.00568 0.98742 1.21016 1.06964 1.06529 1.22208 0.90397 1.24922 0.94852 0.98004 0.94521 1.69884 1.21658 1.34424 1.26656 0.86923 0.80956 0.82641 0.79733 1.20074 1.21062 1.18115 1.19260 0.93536 0.97158 0.94364 1.20885 0.93647 0.96890 0.98733 1.21065 0.94542 1.00378 0.98158 1.21042 0.99512 0.99598 0.94382 1.21002 0.94173 1.00252 0.98782 1.20991 0.94608 1.00899 0.97224 0.92579 0.91196 0.93705 0.91860 0.91968 0.92324 0.90730 0.92134 0.77141 0.95147 0.92880 0.93734 0.92301 0.86321 0.86523 0.86659 0.86469 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.35 37.16 0.31 -1.37 16 2 C -0.11 -1.14 5.38 -26.73 -0.14 -1.28 16 3 C -0.08 -0.93 2.04 -90.62 -0.18 -1.11 16 4 H 0.08 0.97 6.52 -51.93 -0.34 0.63 16 5 C -0.17 -1.99 7.75 37.16 0.29 -1.71 16 6 C -0.07 -1.01 2.00 -92.92 -0.19 -1.19 16 7 H 0.10 1.26 7.84 -51.93 -0.41 0.85 16 8 C 0.51 9.63 6.32 -10.98 -0.07 9.56 16 9 O -0.55 -12.42 15.04 5.56 0.08 -12.34 16 10 N -0.70 -13.91 3.71 -54.93 -0.20 -14.12 16 11 C 0.23 5.43 2.12 -69.09 -0.15 5.28 16 12 H 0.05 1.30 4.69 -51.93 -0.24 1.06 16 13 C -0.15 -3.21 9.47 37.15 0.35 -2.86 16 14 C -0.53 -14.12 9.05 -34.44 -0.31 -14.43 16 15 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 16 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 17 N -0.89 -26.14 13.96 55.43 0.77 -25.36 16 18 Si 0.87 21.61 27.23 -169.99 -4.63 16.98 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.26 -6.33 6.48 56.52 0.37 -5.96 16 22 C -0.04 -0.60 2.16 -104.63 -0.23 -0.83 16 23 C -0.08 -1.17 6.12 -39.58 -0.24 -1.42 16 24 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 25 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 26 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 27 C -0.12 -1.55 8.09 -39.58 -0.32 -1.87 16 28 H 0.06 0.60 6.63 -51.93 -0.34 0.25 16 29 H 0.07 0.77 4.67 -51.93 -0.24 0.53 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.06 6.01 -51.93 -0.31 0.75 16 35 H 0.06 0.67 7.68 -51.93 -0.40 0.28 16 36 H 0.39 6.93 6.71 -40.82 -0.27 6.66 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.12 1.71 7.02 -52.49 -0.37 1.34 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.12 1.38 7.97 -52.48 -0.42 0.97 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -30.99 348.28 -8.06 -39.06 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.16 Total: 7.27 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.17 Total: -16.74 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.57 Total: -39.48 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.63 Total: 16.98 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.99 -8.06 -39.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250569192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.511 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds