Wall clock time and date at job start Tue Mar 31 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 H 1.09003 * 109.47046 * 308.30473 * 3 2 1 5 5 C 1.52998 * 109.47342 * 188.30547 * 3 2 1 6 6 C 1.52999 * 109.46971 * 68.30103 * 3 2 1 7 7 H 1.09003 * 109.46959 * 51.87222 * 6 3 2 8 8 C 1.50702 * 109.47208 * 171.86560 * 6 3 2 9 9 O 1.21277 * 119.99989 * 103.87522 * 8 6 3 10 10 N 1.34781 * 120.00272 * 283.88514 * 8 6 3 11 11 C 1.46492 * 120.00078 * 184.82792 * 10 8 6 12 12 H 1.09007 * 109.47017 * 35.00176 * 11 10 8 13 13 C 1.52995 * 109.47363 * 274.99634 * 11 10 8 14 14 C 1.50704 * 109.46997 * 154.99658 * 11 10 8 15 15 H 1.08001 * 120.00061 * 34.35258 * 14 11 10 16 16 C 1.37875 * 120.00114 * 214.34688 * 14 11 10 17 17 N 1.31514 * 120.00200 * 183.82220 * 16 14 11 18 18 Si 1.86807 * 120.00071 * 3.82880 * 16 14 11 19 19 H 1.48497 * 109.47019 * 93.61857 * 18 16 14 20 20 H 1.48497 * 109.47089 * 213.62321 * 18 16 14 21 21 H 1.48498 * 109.46832 * 333.62080 * 18 16 14 22 22 C 1.50698 * 109.47525 * 291.86714 * 6 3 2 23 23 C 1.38234 * 119.99925 * 308.49543 * 22 6 3 24 24 C 1.38237 * 119.99640 * 179.80586 * 23 22 6 25 25 C 1.38236 * 120.00114 * 0.40054 * 24 23 22 26 26 C 1.38235 * 120.00077 * 359.85739 * 25 24 23 27 27 C 1.38234 * 119.99937 * 128.76639 * 22 6 3 28 28 H 1.08991 * 109.47359 * 44.92501 * 1 2 3 29 29 H 1.09002 * 109.47068 * 284.91928 * 1 2 3 30 30 H 1.09004 * 109.46881 * 164.92601 * 1 2 3 31 31 H 1.08996 * 109.47610 * 120.00331 * 2 1 3 32 32 H 1.09003 * 109.46769 * 240.00368 * 2 1 3 33 33 H 1.09005 * 109.47112 * 57.48620 * 5 3 2 34 34 H 1.08996 * 109.47248 * 177.49010 * 5 3 2 35 35 H 1.09001 * 109.46779 * 297.48817 * 5 3 2 36 36 H 0.96999 * 119.99371 * 4.82733 * 10 8 6 37 37 H 1.09006 * 109.47186 * 64.96761 * 13 11 10 38 38 H 1.09001 * 109.47536 * 184.95881 * 13 11 10 39 39 H 1.08992 * 109.47247 * 304.96702 * 13 11 10 40 40 H 0.97001 * 120.00632 * 180.02562 * 17 16 14 41 41 H 1.07999 * 119.99905 * 359.97438 * 23 22 6 42 42 H 1.08000 * 119.99794 * 180.23383 * 24 23 22 43 43 H 1.07997 * 119.99716 * 179.83200 * 25 24 23 44 44 H 1.07996 * 120.00147 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.00025 * 359.97438 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5605 1.9974 -0.8065 5 6 3.5557 1.4476 -0.2084 6 6 1.7071 2.1011 1.3403 7 1 2.0631 1.4691 2.1540 8 6 2.3794 3.4475 1.4191 9 8 1.7299 4.4597 1.2623 10 7 3.7024 3.5270 1.6636 11 6 4.3365 4.8350 1.8453 12 1 3.6446 5.5067 2.3536 13 6 4.7029 5.4183 0.4793 14 6 5.5845 4.6773 2.6754 15 1 6.1857 3.7850 2.5823 16 6 5.9586 5.6722 3.5535 17 7 7.0863 5.5691 4.2222 18 14 4.8637 7.1666 3.7934 19 1 3.9588 6.9369 4.9482 20 1 5.7066 8.3609 4.0550 21 1 4.0555 7.3900 2.5679 22 6 0.2150 2.2770 1.4568 23 6 -0.4897 2.8936 0.4399 24 6 -1.8590 3.0514 0.5450 25 6 -2.5224 2.6001 1.6707 26 6 -1.8169 1.9883 2.6900 27 6 -0.4482 1.8269 2.5830 28 1 -0.3633 0.7275 -0.7256 29 1 -0.3633 0.2646 0.9930 30 1 -0.3633 -0.9924 -0.2673 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.7958 0.9388 -1.1420 34 1 3.9129 2.4764 -0.2529 35 1 4.0382 0.9311 0.6214 36 1 4.2347 2.7180 1.7193 37 1 3.7930 5.6147 -0.0879 38 1 5.2529 6.3493 0.6173 39 1 5.3238 4.7068 -0.0649 40 1 7.3495 6.2689 4.8403 41 1 0.0291 3.2496 -0.4379 42 1 -2.4102 3.5297 -0.2511 43 1 -3.5918 2.7258 1.7540 44 1 -2.3351 1.6361 3.5696 45 1 0.1030 1.3487 3.3793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250569192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:00 Heat of formation + Delta-G solvation = -45.535183 kcal Electronic energy + Delta-G solvation = -24061.979044 eV Core-core repulsion = 20849.993103 eV Total energy + Delta-G solvation = -3211.985941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67060 -39.73781 -37.38147 -36.69796 -34.37973 -32.64881 -32.03294 -31.71235 -30.71362 -27.90002 -27.32359 -24.51763 -23.59698 -23.31869 -22.13843 -21.33433 -20.80876 -19.18633 -17.92638 -17.74893 -17.14768 -16.32451 -16.15523 -15.95443 -15.47520 -15.29692 -14.89177 -14.60890 -14.51127 -14.32040 -14.18266 -13.99669 -13.83746 -13.56364 -13.33078 -13.16137 -13.02682 -12.83772 -12.67820 -12.44794 -12.26530 -11.95537 -11.87567 -11.82421 -11.64785 -11.59718 -11.37457 -11.19370 -10.85745 -10.58875 -9.71610 -9.66039 -9.37867 -8.39450 -6.44822 0.50473 0.60517 1.26183 1.31996 1.43426 1.80986 2.25875 2.48532 2.96998 3.09985 3.61262 3.74398 3.87498 4.12992 4.18444 4.24751 4.33332 4.35835 4.44095 4.49271 4.53469 4.64082 4.71779 4.74786 4.79952 4.83608 4.87559 4.89984 5.05373 5.09461 5.17293 5.21568 5.23094 5.25006 5.36018 5.40311 5.44302 5.46499 5.56309 5.65255 5.69694 5.77685 5.79875 6.12987 6.19721 6.59997 6.94132 7.21274 7.50263 8.75586 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018860 B = 0.005019 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.229789 B = 5577.878108 C = 6332.726955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.107 4.107 3 C -0.071 4.071 4 H 0.067 0.933 5 C -0.166 4.166 6 C -0.061 4.061 7 H 0.111 0.889 8 C 0.508 3.492 9 O -0.588 6.588 10 N -0.702 5.702 11 C 0.233 3.767 12 H 0.027 0.973 13 C -0.139 4.139 14 C -0.523 4.523 15 H 0.058 0.942 16 C 0.035 3.965 17 N -0.929 5.929 18 Si 0.922 3.078 19 H -0.276 1.276 20 H -0.275 1.275 21 H -0.257 1.257 22 C -0.058 4.058 23 C -0.099 4.099 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.126 4.126 27 C -0.130 4.130 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.405 0.595 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.270 0.730 41 H 0.105 0.895 42 H 0.133 0.867 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.145 -12.333 -7.834 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.144 4.144 3 C -0.090 4.090 4 H 0.086 0.914 5 C -0.223 4.223 6 C -0.082 4.082 7 H 0.129 0.871 8 C 0.295 3.705 9 O -0.469 6.469 10 N -0.353 5.353 11 C 0.129 3.871 12 H 0.045 0.955 13 C -0.198 4.198 14 C -0.561 4.561 15 H 0.076 0.924 16 C -0.165 4.165 17 N -0.568 5.568 18 Si 0.747 3.253 19 H -0.202 1.202 20 H -0.201 1.201 21 H -0.181 1.181 22 C -0.059 4.059 23 C -0.117 4.117 24 C -0.150 4.150 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.148 4.148 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.241 0.759 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.151 0.849 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.442 -11.518 -7.789 21.533 hybrid contribution 0.371 0.802 0.450 0.992 sum -16.071 -10.716 -7.340 20.664 Atomic orbital electron populations 1.22173 0.95882 1.01243 1.02508 1.21508 0.95976 0.93887 1.03043 1.21124 0.96797 0.97266 0.93771 0.91435 1.22176 0.94574 1.02306 1.03282 1.20506 0.92473 0.93308 1.01888 0.87062 1.21044 0.82203 0.91665 0.75540 1.90626 1.65172 1.39092 1.51990 1.46597 1.08077 1.10399 1.70178 1.18903 0.91645 0.82748 0.93764 0.95479 1.22100 0.99337 1.00520 0.97850 1.21185 1.07518 1.05433 1.22007 0.92429 1.25549 0.95800 1.00470 0.94712 1.69972 1.23209 1.35666 1.27967 0.86107 0.79481 0.80279 0.79400 1.20168 1.20080 1.18110 1.19290 0.93217 0.98287 0.95083 1.20904 0.94527 0.97717 0.98598 1.21327 0.94111 1.00381 0.99165 1.21395 1.00909 0.98532 0.93702 1.21346 0.93848 0.99598 0.99638 1.21222 0.95476 1.01069 0.97071 0.93403 0.91933 0.92547 0.90987 0.90551 0.90537 0.93302 0.91264 0.75867 0.94769 0.93522 0.92292 0.92062 0.87648 0.84950 0.84028 0.84035 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 8.35 71.98 0.60 -2.38 16 2 C -0.11 -1.89 5.38 30.59 0.16 -1.73 16 3 C -0.07 -1.60 2.04 -10.79 -0.02 -1.62 16 4 H 0.07 1.67 6.52 -2.39 -0.02 1.65 16 5 C -0.17 -3.73 7.75 71.98 0.56 -3.17 16 6 C -0.06 -1.67 2.00 -12.29 -0.02 -1.69 16 7 H 0.11 2.71 7.84 -2.39 -0.02 2.69 16 8 C 0.51 19.13 6.32 87.66 0.55 19.69 16 9 O -0.59 -26.75 15.04 -3.02 -0.05 -26.80 16 10 N -0.70 -27.64 3.71 -446.10 -1.65 -29.30 16 11 C 0.23 11.06 2.12 44.25 0.09 11.16 16 12 H 0.03 1.42 4.69 -2.38 -0.01 1.41 16 13 C -0.14 -6.05 9.47 71.98 0.68 -5.37 16 14 C -0.52 -28.17 9.05 25.60 0.23 -27.94 16 15 H 0.06 3.28 8.06 -2.91 -0.02 3.26 16 16 C 0.04 1.97 5.47 84.65 0.46 2.43 16 17 N -0.93 -55.25 13.96 21.45 0.30 -54.95 16 18 Si 0.92 44.87 27.23 68.60 1.87 46.74 16 19 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.26 -12.39 6.48 99.48 0.64 -11.75 16 22 C -0.06 -1.59 2.16 -19.87 -0.04 -1.63 16 23 C -0.10 -2.74 6.12 22.27 0.14 -2.61 16 24 C -0.13 -3.11 10.05 22.27 0.22 -2.88 16 25 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 26 C -0.13 -2.68 10.05 22.27 0.22 -2.45 16 27 C -0.13 -3.17 8.09 22.27 0.18 -2.99 16 28 H 0.05 0.96 6.63 -2.39 -0.02 0.94 16 29 H 0.06 1.26 4.67 -2.39 -0.01 1.25 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.07 1.17 8.08 -2.39 -0.02 1.16 16 32 H 0.08 1.17 8.13 -2.39 -0.02 1.15 16 33 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.05 1.35 6.01 -2.39 -0.01 1.34 16 35 H 0.07 1.41 7.68 -2.39 -0.02 1.40 16 36 H 0.40 14.09 6.71 -92.71 -0.62 13.47 16 37 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.11 3.10 7.02 -2.91 -0.02 3.08 16 42 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 45 H 0.13 2.76 7.97 -2.91 -0.02 2.74 16 Total: -1.00 -66.70 348.28 5.00 -61.70 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.29 Total: 28.21 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 4.25 Total: -25.60 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -1.35 Total: -84.25 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.05 Total: -26.80 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.87 Total: 46.74 kcal Total: -66.70 5.00 -61.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250569192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.165 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds