Wall clock time and date at job start Tue Mar 31 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47077 * 2 1 4 4 N 1.46505 * 109.47287 * 179.97438 * 3 2 1 5 5 C 1.37099 * 120.00104 * 263.44080 * 4 3 2 6 6 H 1.08002 * 119.99896 * 188.11813 * 5 4 3 7 7 C 1.38946 * 119.99974 * 8.11562 * 5 4 3 8 8 N 1.31411 * 120.00136 * 25.94475 * 7 5 4 9 9 Si 1.86798 * 119.99991 * 205.94051 * 7 5 4 10 10 H 1.48500 * 109.47394 * 84.99038 * 9 7 5 11 11 H 1.48496 * 109.47436 * 204.98932 * 9 7 5 12 12 H 1.48504 * 109.47173 * 324.99087 * 9 7 5 13 13 C 1.34770 * 119.99675 * 83.43653 * 4 3 2 14 14 O 1.21291 * 120.00022 * 180.02562 * 13 4 3 15 15 C 1.50697 * 120.00149 * 0.02562 * 13 4 3 16 16 C 1.53005 * 109.47319 * 180.02562 * 15 13 4 17 17 H 1.08998 * 109.46936 * 304.99939 * 16 15 13 18 18 C 1.52999 * 109.47071 * 64.99734 * 16 15 13 19 19 C 1.53005 * 109.46946 * 185.00061 * 18 16 15 20 20 C 1.50700 * 109.46984 * 185.00123 * 16 15 13 21 21 C 1.38231 * 120.00006 * 299.72223 * 20 16 15 22 22 C 1.38238 * 120.00196 * 179.81354 * 21 20 16 23 23 C 1.38248 * 119.99542 * 0.39822 * 22 21 20 24 24 C 1.38236 * 120.00159 * 359.85624 * 23 22 21 25 25 C 1.38238 * 119.99756 * 359.95839 * 24 23 22 26 26 H 1.09003 * 109.47087 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46875 * 299.99420 * 1 2 3 28 28 H 1.09003 * 109.47375 * 59.99341 * 1 2 3 29 29 H 1.09003 * 109.46875 * 240.00580 * 2 1 3 30 30 H 1.08994 * 109.47184 * 120.00459 * 2 1 3 31 31 H 1.09003 * 109.46794 * 60.00531 * 3 2 1 32 32 H 1.08994 * 109.47488 * 300.00273 * 3 2 1 33 33 H 0.97006 * 119.99899 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47663 * 59.99885 * 15 13 4 35 35 H 1.08997 * 109.47487 * 299.99909 * 15 13 4 36 36 H 1.08994 * 109.47544 * 305.00103 * 18 16 15 37 37 H 1.09005 * 109.46761 * 65.00750 * 18 16 15 38 38 H 1.08997 * 109.46836 * 60.00111 * 19 18 16 39 39 H 1.08999 * 109.46938 * 180.02562 * 19 18 16 40 40 H 1.08994 * 109.47034 * 300.00355 * 19 18 16 41 41 H 1.08005 * 120.00205 * 0.02562 * 21 20 16 42 42 H 1.07996 * 120.00675 * 180.22915 * 22 21 20 43 43 H 1.08001 * 119.99807 * 179.83412 * 23 22 21 44 44 H 1.07988 * 119.99878 * 179.97438 * 24 23 22 45 45 H 1.07993 * 119.99858 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.5783 1.1804 6 1 5.2620 1.7101 1.1704 7 6 3.5053 1.5465 2.3890 8 7 2.3607 0.9071 2.4791 9 14 4.2117 2.4124 3.8858 10 1 3.8162 3.8436 3.8623 11 1 3.6876 1.7744 5.1201 12 1 5.6929 2.3078 3.8651 13 6 4.1793 1.3089 -1.1586 14 8 5.3922 1.3085 -1.1581 15 6 3.4263 1.1601 -2.4555 16 6 4.4210 1.0263 -3.6103 17 1 5.1057 1.8743 -3.6002 18 6 5.2148 -0.2720 -3.4519 19 6 6.2933 -0.3458 -4.5346 20 6 3.6722 1.0009 -4.9179 21 6 2.7455 0.0053 -5.1644 22 6 2.0558 -0.0158 -6.3623 23 6 2.2988 0.9542 -7.3169 24 6 3.2293 1.9468 -7.0724 25 6 3.9162 1.9700 -5.8730 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 1.8828 0.8846 3.3229 34 1 2.8000 2.0379 -2.6148 35 1 2.7994 0.2696 -2.4115 36 1 5.6850 -0.2928 -2.4688 37 1 4.5417 -1.1237 -3.5509 38 1 6.9663 0.5059 -4.4356 39 1 6.8585 -1.2710 -4.4220 40 1 5.8232 -0.3250 -5.5177 41 1 2.5579 -0.7543 -4.4199 42 1 1.3291 -0.7915 -6.5535 43 1 1.7618 0.9362 -8.2538 44 1 3.4193 2.7042 -7.8183 45 1 4.6428 2.7457 -5.6819 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264012847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:26 Heat of formation + Delta-G solvation = -22.683223 kcal Electronic energy + Delta-G solvation = -23720.624611 eV Core-core repulsion = 20509.629606 eV Total energy + Delta-G solvation = -3210.995006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.65766 -38.46909 -35.82017 -34.70296 -32.37602 -31.29665 -30.80331 -30.55929 -29.26252 -25.92784 -24.88610 -23.46118 -22.72909 -22.08044 -20.75473 -19.88111 -18.46450 -17.01442 -16.74584 -15.97439 -15.23015 -14.77467 -14.44526 -14.29365 -14.10232 -14.00089 -13.63435 -13.44564 -13.25373 -12.80169 -12.68005 -12.38752 -12.19356 -12.08482 -11.70060 -11.48285 -11.30737 -11.13482 -10.98225 -10.89464 -10.82849 -10.52764 -10.42348 -10.31224 -10.19138 -10.06496 -10.00661 -9.59430 -8.82176 -8.80662 -8.54556 -8.19730 -7.69647 -6.33209 -3.73247 1.49812 1.51095 3.17522 3.27782 3.32249 3.90935 3.93437 4.15771 4.78681 4.95909 5.04929 5.08242 5.13958 5.23795 5.34809 5.56014 5.59167 5.65195 5.68121 5.80131 5.85695 5.94710 6.00938 6.02833 6.13034 6.15060 6.20835 6.26968 6.32898 6.41925 6.46978 6.49545 6.57078 6.59910 6.64890 6.67706 6.83725 6.88139 6.93556 7.00556 7.14561 7.32319 7.50818 7.75214 8.14006 8.55333 9.23058 9.49981 10.06082 10.67243 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.004469 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.085670 B = 6264.007311 C = 7021.001009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C 0.126 3.874 4 N -0.443 5.443 5 C -0.308 4.308 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.864 5.864 9 Si 0.915 3.085 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.271 1.271 13 C 0.443 3.557 14 O -0.590 6.590 15 C -0.121 4.121 16 C -0.030 4.030 17 H 0.082 0.918 18 C -0.119 4.119 19 C -0.145 4.145 20 C -0.059 4.059 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.134 4.134 24 C -0.121 4.121 25 C -0.119 4.119 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.036 0.964 29 H 0.030 0.970 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.031 0.969 33 H 0.266 0.734 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 -0.996 -13.630 14.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C 0.002 3.998 4 N -0.161 5.161 5 C -0.435 4.435 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.503 5.503 9 Si 0.742 3.258 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.196 1.196 13 C 0.232 3.768 14 O -0.476 6.476 15 C -0.162 4.162 16 C -0.049 4.049 17 H 0.100 0.900 18 C -0.156 4.156 19 C -0.202 4.202 20 C -0.059 4.059 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.152 4.152 24 C -0.139 4.139 25 C -0.137 4.137 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.287 -1.029 -13.446 13.880 hybrid contribution -0.074 0.368 0.743 0.832 sum -3.361 -0.661 -12.703 13.157 Atomic orbital electron populations 1.21608 0.97350 1.00025 1.00568 1.21888 0.93934 0.98355 1.02129 1.21498 0.80822 0.96799 1.00687 1.43826 1.05225 1.61365 1.05641 1.19703 0.94226 1.47311 0.82259 0.87885 1.25142 0.96492 0.96785 0.98744 1.70115 1.16785 1.36884 1.26524 0.86123 0.79535 0.79754 0.80415 1.20491 1.21218 1.19573 1.19904 0.87983 0.83934 0.84994 1.90466 1.13936 1.56389 1.86845 1.21620 0.98310 1.02612 0.93613 1.19946 0.95586 1.00047 0.89311 0.89969 1.21692 0.97233 0.95365 1.01329 1.21721 0.98828 1.01071 0.98573 1.20078 0.95777 0.94215 0.95867 1.21060 0.96426 0.98641 0.97137 1.21111 0.99761 0.98835 0.94109 1.21056 0.99108 0.95789 0.99271 1.21087 0.96988 0.98662 0.97199 1.21114 1.00118 0.98814 0.93687 0.94102 0.92718 0.94461 0.95103 0.88215 0.88131 0.95106 0.92379 0.90866 0.90261 0.88783 0.93100 0.92928 0.93436 0.93526 0.86112 0.86462 0.86665 0.86528 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.91 37.16 0.37 -1.94 16 2 C -0.12 -2.52 5.67 -26.73 -0.15 -2.68 16 3 C 0.13 2.75 4.35 -4.04 -0.02 2.73 16 4 N -0.44 -11.03 2.64 -114.82 -0.30 -11.34 16 5 C -0.31 -8.37 9.42 -14.93 -0.14 -8.51 16 6 H 0.10 2.99 7.31 -52.49 -0.38 2.61 16 7 C 0.03 0.80 4.88 -17.47 -0.09 0.71 16 8 N -0.86 -21.60 8.70 55.50 0.48 -21.12 16 9 Si 0.91 20.32 29.62 -169.99 -5.04 15.28 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.44 10.49 7.25 -10.99 -0.08 10.41 16 14 O -0.59 -15.63 13.58 5.55 0.08 -15.55 16 15 C -0.12 -2.24 3.53 -27.88 -0.10 -2.34 16 16 C -0.03 -0.50 1.69 -91.77 -0.15 -0.66 16 17 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 18 C -0.12 -1.99 5.08 -26.73 -0.14 -2.13 16 19 C -0.14 -2.10 9.73 37.16 0.36 -1.74 16 20 C -0.06 -0.85 3.76 -104.62 -0.39 -1.24 16 21 C -0.11 -1.53 8.71 -39.58 -0.34 -1.88 16 22 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 23 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 24 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 25 C -0.12 -1.57 9.67 -39.58 -0.38 -1.95 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.03 0.60 6.44 -51.93 -0.33 0.26 16 30 H 0.10 2.35 6.40 -51.93 -0.33 2.02 16 31 H 0.10 2.39 5.82 -51.93 -0.30 2.09 16 32 H 0.03 0.60 6.72 -51.93 -0.35 0.26 16 33 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 34 H 0.07 1.29 7.42 -51.93 -0.39 0.91 16 35 H 0.08 1.40 5.84 -51.93 -0.30 1.09 16 36 H 0.09 1.91 5.88 -51.93 -0.31 1.60 16 37 H 0.05 0.80 7.21 -51.93 -0.37 0.42 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.64 7.38 -51.93 -0.38 0.25 16 41 H 0.12 1.57 7.13 -52.48 -0.37 1.19 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 44 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 45 H 0.12 1.46 7.95 -52.49 -0.42 1.04 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -28.20 352.03 -9.08 -37.29 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.16 Total: 6.83 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.45 Total: -16.70 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.18 Total: -32.45 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.08 Total: -15.55 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.04 Total: 15.28 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.20 -9.08 -37.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.606 kcal (2) G-P(sol) polarization free energy of solvation -28.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds