Wall clock time and date at job start Tue Mar 31 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47077 * 2 1 4 4 N 1.46505 * 109.47287 * 179.97438 * 3 2 1 5 5 C 1.37099 * 120.00104 * 263.44080 * 4 3 2 6 6 H 1.08002 * 119.99896 * 188.11813 * 5 4 3 7 7 C 1.38946 * 119.99974 * 8.11562 * 5 4 3 8 8 N 1.31411 * 120.00136 * 25.94475 * 7 5 4 9 9 Si 1.86798 * 119.99991 * 205.94051 * 7 5 4 10 10 H 1.48500 * 109.47394 * 84.99038 * 9 7 5 11 11 H 1.48496 * 109.47436 * 204.98932 * 9 7 5 12 12 H 1.48504 * 109.47173 * 324.99087 * 9 7 5 13 13 C 1.34770 * 119.99675 * 83.43653 * 4 3 2 14 14 O 1.21291 * 120.00022 * 180.02562 * 13 4 3 15 15 C 1.50697 * 120.00149 * 0.02562 * 13 4 3 16 16 C 1.53005 * 109.47319 * 180.02562 * 15 13 4 17 17 H 1.08998 * 109.46936 * 304.99939 * 16 15 13 18 18 C 1.52999 * 109.47071 * 64.99734 * 16 15 13 19 19 C 1.53005 * 109.46946 * 185.00061 * 18 16 15 20 20 C 1.50700 * 109.46984 * 185.00123 * 16 15 13 21 21 C 1.38231 * 120.00006 * 299.72223 * 20 16 15 22 22 C 1.38238 * 120.00196 * 179.81354 * 21 20 16 23 23 C 1.38248 * 119.99542 * 0.39822 * 22 21 20 24 24 C 1.38236 * 120.00159 * 359.85624 * 23 22 21 25 25 C 1.38238 * 119.99756 * 359.95839 * 24 23 22 26 26 H 1.09003 * 109.47087 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46875 * 299.99420 * 1 2 3 28 28 H 1.09003 * 109.47375 * 59.99341 * 1 2 3 29 29 H 1.09003 * 109.46875 * 240.00580 * 2 1 3 30 30 H 1.08994 * 109.47184 * 120.00459 * 2 1 3 31 31 H 1.09003 * 109.46794 * 60.00531 * 3 2 1 32 32 H 1.08994 * 109.47488 * 300.00273 * 3 2 1 33 33 H 0.97006 * 119.99899 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47663 * 59.99885 * 15 13 4 35 35 H 1.08997 * 109.47487 * 299.99909 * 15 13 4 36 36 H 1.08994 * 109.47544 * 305.00103 * 18 16 15 37 37 H 1.09005 * 109.46761 * 65.00750 * 18 16 15 38 38 H 1.08997 * 109.46836 * 60.00111 * 19 18 16 39 39 H 1.08999 * 109.46938 * 180.02562 * 19 18 16 40 40 H 1.08994 * 109.47034 * 300.00355 * 19 18 16 41 41 H 1.08005 * 120.00205 * 0.02562 * 21 20 16 42 42 H 1.07996 * 120.00675 * 180.22915 * 22 21 20 43 43 H 1.08001 * 119.99807 * 179.83412 * 23 22 21 44 44 H 1.07988 * 119.99878 * 179.97438 * 24 23 22 45 45 H 1.07993 * 119.99858 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.5783 1.1804 6 1 5.2620 1.7101 1.1704 7 6 3.5053 1.5465 2.3890 8 7 2.3607 0.9071 2.4791 9 14 4.2117 2.4124 3.8858 10 1 3.8162 3.8436 3.8623 11 1 3.6876 1.7744 5.1201 12 1 5.6929 2.3078 3.8651 13 6 4.1793 1.3089 -1.1586 14 8 5.3922 1.3085 -1.1581 15 6 3.4263 1.1601 -2.4555 16 6 4.4210 1.0263 -3.6103 17 1 5.1057 1.8743 -3.6002 18 6 5.2148 -0.2720 -3.4519 19 6 6.2933 -0.3458 -4.5346 20 6 3.6722 1.0009 -4.9179 21 6 2.7455 0.0053 -5.1644 22 6 2.0558 -0.0158 -6.3623 23 6 2.2988 0.9542 -7.3169 24 6 3.2293 1.9468 -7.0724 25 6 3.9162 1.9700 -5.8730 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 1.8828 0.8846 3.3229 34 1 2.8000 2.0379 -2.6148 35 1 2.7994 0.2696 -2.4115 36 1 5.6850 -0.2928 -2.4688 37 1 4.5417 -1.1237 -3.5509 38 1 6.9663 0.5059 -4.4356 39 1 6.8585 -1.2710 -4.4220 40 1 5.8232 -0.3250 -5.5177 41 1 2.5579 -0.7543 -4.4199 42 1 1.3291 -0.7915 -6.5535 43 1 1.7618 0.9362 -8.2538 44 1 3.4193 2.7042 -7.8183 45 1 4.6428 2.7457 -5.6819 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264012847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:26 Heat of formation + Delta-G solvation = -35.059791 kcal Electronic energy + Delta-G solvation = -23721.161300 eV Core-core repulsion = 20509.629606 eV Total energy + Delta-G solvation = -3211.531694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00168 -39.95253 -37.44725 -36.22181 -34.17913 -33.10355 -31.78163 -31.70945 -30.58155 -27.65818 -26.48315 -25.02772 -23.77704 -23.10804 -22.36612 -21.25393 -20.09794 -18.81826 -18.20163 -17.38871 -16.62154 -16.17069 -16.01706 -15.86287 -15.57739 -15.27982 -15.17668 -14.85969 -14.32189 -14.18238 -14.04799 -13.79575 -13.54227 -13.42874 -13.29984 -13.08350 -12.76584 -12.62709 -12.54946 -12.25639 -12.16660 -12.06866 -11.95575 -11.89630 -11.70069 -11.48212 -11.42670 -11.25574 -10.71268 -10.13712 -9.72779 -9.62568 -9.49441 -8.29905 -5.78140 0.54578 0.59102 1.36669 1.43145 1.52709 2.08258 2.30298 2.95213 3.08570 3.16503 3.79624 3.82402 4.18888 4.20277 4.22108 4.25145 4.34256 4.38162 4.39598 4.50362 4.60489 4.63760 4.70426 4.75268 4.76174 4.82931 4.95646 4.98072 5.08541 5.12377 5.17070 5.24647 5.25636 5.26923 5.38930 5.41932 5.48762 5.54026 5.64007 5.69937 5.71260 5.87674 5.96051 6.13746 6.21614 6.59579 7.25188 7.58025 8.15318 8.67750 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.004469 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.085670 B = 6264.007311 C = 7021.001009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.117 4.117 3 C 0.128 3.872 4 N -0.456 5.456 5 C -0.351 4.351 6 H 0.069 0.931 7 C 0.008 3.992 8 N -0.863 5.863 9 Si 0.974 3.026 10 H -0.272 1.272 11 H -0.273 1.273 12 H -0.281 1.281 13 C 0.431 3.569 14 O -0.629 6.629 15 C -0.106 4.106 16 C -0.021 4.021 17 H 0.060 0.940 18 C -0.117 4.117 19 C -0.136 4.136 20 C -0.073 4.073 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.130 4.130 24 C -0.122 4.122 25 C -0.132 4.132 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.272 0.728 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.120 0.880 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.954 -1.127 -15.594 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.155 4.155 3 C 0.005 3.995 4 N -0.174 5.174 5 C -0.478 4.478 6 H 0.087 0.913 7 C -0.196 4.196 8 N -0.501 5.501 9 Si 0.798 3.202 10 H -0.197 1.197 11 H -0.198 1.198 12 H -0.207 1.207 13 C 0.221 3.779 14 O -0.517 6.517 15 C -0.146 4.146 16 C -0.040 4.040 17 H 0.079 0.921 18 C -0.154 4.154 19 C -0.193 4.193 20 C -0.074 4.074 21 C -0.144 4.144 22 C -0.139 4.139 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.150 4.150 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.138 0.862 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.159 0.841 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.543 -1.169 -15.409 16.418 hybrid contribution 0.604 0.387 1.333 1.514 sum -4.939 -0.782 -14.076 14.938 Atomic orbital electron populations 1.21520 0.94295 1.01442 1.01328 1.21733 0.96492 0.96701 1.00601 1.21549 0.79145 0.97989 1.00782 1.44060 1.06476 1.61454 1.05398 1.19516 0.93341 1.50765 0.84215 0.91267 1.25746 0.96973 0.96427 1.00414 1.70196 1.16860 1.35703 1.27318 0.85259 0.78217 0.78960 0.77719 1.19735 1.19826 1.20671 1.20831 0.87952 0.82746 0.86345 1.90435 1.15880 1.57758 1.87650 1.21538 0.98322 1.03472 0.91274 1.19772 0.95007 0.98953 0.90285 0.92117 1.21596 0.97935 0.96083 0.99786 1.21634 0.98092 1.01270 0.98317 1.19806 0.96851 0.95814 0.94882 1.21138 0.96684 0.98428 0.98149 1.21409 0.99632 0.99508 0.93338 1.21453 0.98433 0.94803 1.00117 1.21390 0.96404 0.99316 0.96838 1.21236 1.00715 0.98697 0.94352 0.92386 0.93467 0.92140 0.94519 0.91821 0.90148 0.92643 0.91793 0.89706 0.89072 0.93031 0.92058 0.93691 0.92429 0.92139 0.86200 0.84114 0.83746 0.84123 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.91 71.98 0.71 -3.30 16 2 C -0.12 -4.67 5.67 30.59 0.17 -4.50 16 3 C 0.13 5.63 4.35 86.38 0.38 6.01 16 4 N -0.46 -23.58 2.64 -635.56 -1.68 -25.26 16 5 C -0.35 -20.03 9.42 84.04 0.79 -19.24 16 6 H 0.07 4.33 7.31 -2.91 -0.02 4.30 16 7 C 0.01 0.41 4.88 84.93 0.41 0.82 16 8 N -0.86 -43.51 8.70 21.66 0.19 -43.32 16 9 Si 0.97 42.34 29.62 68.60 2.03 44.37 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 C 0.43 21.32 7.25 87.66 0.64 21.95 16 14 O -0.63 -35.53 13.58 -3.06 -0.04 -35.57 16 15 C -0.11 -3.96 3.53 29.85 0.11 -3.85 16 16 C -0.02 -0.72 1.69 -11.54 -0.02 -0.74 16 17 H 0.06 2.28 7.69 -2.39 -0.02 2.26 16 18 C -0.12 -4.02 5.08 30.60 0.16 -3.87 16 19 C -0.14 -3.95 9.73 71.98 0.70 -3.25 16 20 C -0.07 -2.02 3.76 -19.87 -0.07 -2.10 16 21 C -0.13 -3.10 8.71 22.27 0.19 -2.90 16 22 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 23 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 24 C -0.12 -2.42 10.05 22.27 0.22 -2.19 16 25 C -0.13 -3.26 9.67 22.27 0.22 -3.04 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.04 1.39 6.44 -2.39 -0.02 1.38 16 30 H 0.06 3.03 6.40 -2.39 -0.02 3.01 16 31 H 0.08 3.84 5.82 -2.39 -0.01 3.83 16 32 H 0.06 2.12 6.72 -2.39 -0.02 2.11 16 33 H 0.27 12.89 8.31 -92.70 -0.77 12.12 16 34 H 0.08 2.95 7.42 -2.39 -0.02 2.93 16 35 H 0.09 3.17 5.84 -2.39 -0.01 3.15 16 36 H 0.05 2.23 5.88 -2.39 -0.01 2.21 16 37 H 0.06 1.93 7.21 -2.38 -0.02 1.92 16 38 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.59 7.38 -2.39 -0.02 1.57 16 41 H 0.12 2.89 7.13 -2.91 -0.02 2.87 16 42 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 43 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 44 H 0.14 2.07 8.06 -2.92 -0.02 2.05 16 45 H 0.12 2.85 7.95 -2.91 -0.02 2.82 16 Total: -1.00 -64.18 352.03 6.51 -57.67 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.96 Total: 26.65 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 5.05 Total: -24.54 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -1.49 Total: -68.58 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.04 Total: -35.57 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -64.18 6.51 -57.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.613 kcal (2) G-P(sol) polarization free energy of solvation -64.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds