Wall clock time and date at job start Tue Mar 31 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47264 * 2 1 4 4 H 1.09005 * 109.47114 * 305.25502 * 3 2 1 5 5 C 1.53007 * 109.46915 * 65.25507 * 3 2 1 6 6 C 1.50707 * 109.46722 * 186.70906 * 5 3 2 7 7 O 1.21282 * 120.00195 * 357.41264 * 6 5 3 8 8 N 1.34780 * 119.99741 * 177.41925 * 6 5 3 9 9 C 1.46502 * 119.99976 * 359.97438 * 8 6 5 10 10 C 1.46495 * 120.00025 * 180.02562 * 8 6 5 11 11 H 1.09004 * 109.46810 * 359.97438 * 10 8 6 12 12 C 1.52991 * 109.47480 * 119.99533 * 10 8 6 13 13 C 1.50703 * 109.46841 * 240.00018 * 10 8 6 14 14 H 1.07991 * 120.00220 * 359.97438 * 13 10 8 15 15 C 1.37875 * 119.99833 * 180.02562 * 13 10 8 16 16 N 1.31517 * 120.00348 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99951 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47075 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46886 * 119.99559 * 17 15 13 20 20 H 1.48499 * 109.46982 * 239.99656 * 17 15 13 21 21 C 1.50695 * 109.47274 * 185.25304 * 3 2 1 22 22 C 1.38235 * 120.00066 * 299.72757 * 21 3 2 23 23 C 1.38241 * 119.99967 * 179.78773 * 22 21 3 24 24 C 1.38233 * 120.00102 * 0.43817 * 23 22 21 25 25 C 1.38240 * 119.99763 * 359.81710 * 24 23 22 26 26 C 1.38232 * 120.00045 * 120.00156 * 21 3 2 27 27 H 1.08997 * 109.47419 * 174.24770 * 1 2 3 28 28 H 1.08999 * 109.47265 * 294.24969 * 1 2 3 29 29 H 1.09004 * 109.46986 * 54.24817 * 1 2 3 30 30 H 1.08996 * 109.47325 * 239.99643 * 2 1 3 31 31 H 1.09005 * 109.46764 * 120.00054 * 2 1 3 32 32 H 1.08992 * 109.47535 * 66.70780 * 5 3 2 33 33 H 1.08998 * 109.47055 * 306.70283 * 5 3 2 34 34 H 1.09002 * 109.46996 * 90.00429 * 9 8 6 35 35 H 1.08999 * 109.46942 * 210.00282 * 9 8 6 36 36 H 1.09000 * 109.47264 * 330.00663 * 9 8 6 37 37 H 1.09004 * 109.47350 * 60.00023 * 12 10 8 38 38 H 1.09002 * 109.47543 * 180.02562 * 12 10 8 39 39 H 1.09002 * 109.47484 * 300.00033 * 12 10 8 40 40 H 0.97002 * 120.00152 * 180.02562 * 16 15 13 41 41 H 1.07999 * 119.99852 * 359.97438 * 22 21 3 42 42 H 1.08002 * 119.99576 * 180.27603 * 23 22 21 43 43 H 1.07998 * 120.00077 * 179.83388 * 24 23 22 44 44 H 1.07997 * 120.00040 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.00085 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6019 1.9828 -0.8392 5 6 1.6407 2.1246 1.3101 6 6 1.9967 3.5875 1.2435 7 8 2.5607 4.0305 0.2655 8 7 1.6883 4.4035 2.2710 9 6 1.0066 3.8684 3.4522 10 6 2.0338 5.8256 2.2061 11 1 2.5313 6.0358 1.2593 12 6 0.7592 6.6654 2.3103 13 6 2.9574 6.1707 3.3458 14 1 3.2567 5.4071 4.0484 15 6 3.4194 7.4614 3.4921 16 7 3.0545 8.3915 2.6368 17 14 4.5637 7.8893 4.9053 18 1 4.8199 6.6745 5.7200 19 1 5.8478 8.4029 4.3643 20 1 3.9327 8.9308 5.7552 21 6 3.5414 1.4445 -0.1301 22 6 4.3189 0.8203 0.8274 23 6 5.6960 0.8184 0.7057 24 6 6.2958 1.4484 -0.3686 25 6 5.5185 2.0771 -1.3232 26 6 4.1413 2.0753 -1.2038 27 1 -0.3634 -1.0224 -0.1030 28 1 -0.3634 0.4221 0.9370 29 1 -0.3633 0.6005 -0.8340 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.1729 1.6586 2.1393 33 1 0.5666 2.0186 1.4623 34 1 1.7472 3.5338 4.1786 35 1 0.3867 4.6465 3.8975 36 1 0.3789 3.0268 3.1594 37 1 0.2619 6.4552 3.2573 38 1 1.0162 7.7236 2.2616 39 1 0.0911 6.4158 1.4860 40 1 3.3799 9.2995 2.7396 41 1 3.8504 0.3316 1.6688 42 1 6.3032 0.3268 1.4515 43 1 7.3718 1.4491 -0.4622 44 1 5.9871 2.5697 -2.1624 45 1 3.5340 2.5665 -1.9498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264082373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:56 Heat of formation + Delta-G solvation = -42.641161 kcal Electronic energy + Delta-G solvation = -23752.843965 eV Core-core repulsion = 20540.983518 eV Total energy + Delta-G solvation = -3211.860447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12226 -39.84406 -37.29376 -36.49796 -34.76499 -31.97607 -31.76171 -31.61326 -29.67569 -27.53268 -27.27032 -26.16546 -23.62387 -23.02390 -22.79632 -20.81376 -19.69672 -18.51003 -17.83561 -17.72530 -17.13166 -16.60726 -16.22530 -15.89435 -15.52916 -15.06268 -14.89990 -14.52358 -14.31112 -14.10869 -14.02255 -13.94508 -13.43810 -13.31720 -13.23895 -12.96428 -12.86060 -12.72217 -12.69674 -12.55528 -12.39299 -12.17062 -12.11716 -12.01027 -11.72466 -11.50177 -11.27567 -11.14745 -10.60558 -10.38289 -9.70119 -9.43789 -9.22202 -8.14384 -6.30743 0.57086 0.62136 1.38408 1.40172 1.51407 1.96725 2.35492 2.56861 2.97839 3.13091 3.75013 3.80497 3.90052 4.18926 4.20827 4.30542 4.34765 4.41614 4.51949 4.56278 4.64447 4.69208 4.71373 4.74739 4.82432 4.86794 4.88929 5.01497 5.06499 5.09874 5.11871 5.20311 5.24895 5.30249 5.38595 5.48197 5.53526 5.66053 5.66311 5.69501 5.71539 5.88426 6.07786 6.18542 6.24145 6.78374 6.95196 7.35785 7.60919 8.89739 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.005188 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.249498 B = 5396.129577 C = 6427.020136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.031 4.031 4 H 0.062 0.938 5 C -0.120 4.120 6 C 0.488 3.512 7 O -0.591 6.591 8 N -0.607 5.607 9 C 0.083 3.917 10 C 0.263 3.737 11 H 0.005 0.995 12 C -0.131 4.131 13 C -0.533 4.533 14 H 0.057 0.943 15 C 0.013 3.987 16 N -0.919 5.919 17 Si 0.963 3.037 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.070 4.070 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.114 4.114 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.125 0.875 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 -18.971 -1.078 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.049 4.049 4 H 0.080 0.920 5 C -0.159 4.159 6 C 0.278 3.722 7 O -0.472 6.472 8 N -0.338 5.338 9 C -0.059 4.059 10 C 0.160 3.840 11 H 0.023 0.977 12 C -0.190 4.190 13 C -0.572 4.572 14 H 0.075 0.925 15 C -0.186 4.186 16 N -0.558 5.558 17 Si 0.788 3.212 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.070 4.070 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.158 4.158 25 C -0.158 4.158 26 C -0.133 4.133 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.154 0.846 44 H 0.143 0.857 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.911 -18.545 -1.595 18.839 hybrid contribution 0.824 1.243 0.293 1.520 sum -2.086 -17.302 -1.303 17.476 Atomic orbital electron populations 1.21852 0.94583 1.02432 1.02250 1.21520 0.96611 0.93090 1.03018 1.20005 0.90754 0.97369 0.96821 0.91965 1.21871 1.04610 0.89520 0.99926 1.21481 0.78498 0.90062 0.82180 1.90627 1.44259 1.78254 1.34107 1.48248 1.57548 1.09875 1.18152 1.21786 0.96866 0.99835 0.87404 1.18437 0.92909 0.76770 0.95836 0.97710 1.21864 0.96477 1.02505 0.98163 1.21605 1.28735 0.94905 1.11949 0.92469 1.25736 0.97788 0.96209 0.98856 1.70036 1.45568 1.02628 1.37588 0.85442 0.78307 0.78389 0.79091 1.18940 1.21249 1.19835 1.19925 0.96033 0.96561 0.94517 1.21224 0.94052 1.00374 0.99037 1.21416 0.95163 0.99977 0.98353 1.21365 1.00539 0.98773 0.95073 1.21343 0.94031 1.00141 1.00266 1.21090 0.95100 0.98314 0.98758 0.91218 0.91598 0.93413 0.91805 0.90164 0.87497 0.86122 0.93062 0.91463 0.88459 0.93374 0.91657 0.96212 0.92751 0.84223 0.84046 0.84574 0.85720 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.54 71.98 0.69 -1.62 16 2 C -0.10 -1.89 5.14 30.59 0.16 -1.74 16 3 C -0.03 -0.80 1.68 -11.54 -0.02 -0.82 16 4 H 0.06 1.90 7.67 -2.38 -0.02 1.88 16 5 C -0.12 -3.20 3.59 29.85 0.11 -3.10 16 6 C 0.49 19.93 7.46 87.66 0.65 20.59 16 7 O -0.59 -29.68 13.54 -3.03 -0.04 -29.72 16 8 N -0.61 -25.82 2.75 -826.79 -2.28 -28.10 16 9 C 0.08 2.60 9.51 127.77 1.21 3.81 16 10 C 0.26 14.00 2.64 44.24 0.12 14.12 16 11 H 0.00 0.32 6.90 -2.38 -0.02 0.30 16 12 C -0.13 -6.48 8.95 71.98 0.64 -5.84 16 13 C -0.53 -29.72 8.37 25.60 0.21 -29.50 16 14 H 0.06 3.12 7.65 -2.92 -0.02 3.10 16 15 C 0.01 0.74 5.30 84.65 0.45 1.19 16 16 N -0.92 -54.21 11.32 21.45 0.24 -53.97 16 17 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 C -0.07 -2.14 3.78 -19.87 -0.08 -2.22 16 22 C -0.13 -3.48 8.69 22.27 0.19 -3.28 16 23 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 24 C -0.14 -3.89 10.05 22.27 0.22 -3.66 16 25 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 26 C -0.11 -3.90 8.66 22.27 0.19 -3.70 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.88 6.71 -2.39 -0.02 0.86 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.21 7.60 -2.38 -0.02 1.19 16 32 H 0.11 2.47 7.16 -2.39 -0.02 2.46 16 33 H 0.12 2.47 5.53 -2.39 -0.01 2.46 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 2.14 6.42 -2.39 -0.02 2.13 16 36 H 0.10 2.10 6.37 -2.39 -0.02 2.09 16 37 H 0.05 2.13 6.66 -2.38 -0.02 2.12 16 38 H 0.06 3.58 6.07 -2.39 -0.01 3.57 16 39 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.14 2.95 7.13 -2.91 -0.02 2.92 16 42 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 44 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 45 H 0.10 3.66 7.95 -2.91 -0.02 3.64 16 Total: -1.00 -72.59 354.92 6.11 -66.47 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.96 Total: 22.43 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 5.21 Total: -23.14 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -2.03 Total: -82.06 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.04 Total: -29.72 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.59 6.11 -66.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264082373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.829 kcal (2) G-P(sol) polarization free energy of solvation -72.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds