Wall clock time and date at job start Tue Mar 31 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46699 * 2 1 4 4 H 1.09005 * 109.46741 * 54.33134 * 3 2 1 5 5 C 1.53002 * 109.46866 * 174.32261 * 3 2 1 6 6 C 1.50697 * 109.47159 * 185.79420 * 5 3 2 7 7 O 1.21284 * 119.99844 * 5.69537 * 6 5 3 8 8 N 1.34775 * 119.99878 * 185.70625 * 6 5 3 9 9 C 1.46502 * 120.00230 * 359.97438 * 8 6 5 10 10 C 1.46500 * 119.99887 * 179.97438 * 8 6 5 11 11 H 1.09007 * 109.47229 * 359.97438 * 10 8 6 12 12 C 1.52999 * 109.47163 * 239.99240 * 10 8 6 13 13 C 1.50708 * 109.46937 * 119.99298 * 10 8 6 14 14 H 1.07991 * 120.00081 * 34.67751 * 13 10 8 15 15 C 1.37881 * 119.99808 * 214.67030 * 13 10 8 16 16 N 1.31515 * 119.99845 * 184.37785 * 15 13 10 17 17 Si 1.86796 * 120.00032 * 4.37948 * 15 13 10 18 18 H 1.48501 * 109.47272 * 94.26093 * 17 15 13 19 19 H 1.48505 * 109.47470 * 214.26134 * 17 15 13 20 20 H 1.48498 * 109.47539 * 334.26207 * 17 15 13 21 21 C 1.50695 * 109.47433 * 294.32653 * 3 2 1 22 22 C 1.38237 * 120.00082 * 299.72544 * 21 3 2 23 23 C 1.38233 * 119.99959 * 179.78725 * 22 21 3 24 24 C 1.38231 * 120.00101 * 0.44262 * 23 22 21 25 25 C 1.38234 * 119.99811 * 359.81360 * 24 23 22 26 26 C 1.38229 * 120.00073 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47180 * 185.14996 * 1 2 3 28 28 H 1.08995 * 109.47458 * 305.14723 * 1 2 3 29 29 H 1.09003 * 109.47071 * 65.15574 * 1 2 3 30 30 H 1.09004 * 109.46994 * 240.00473 * 2 1 3 31 31 H 1.08994 * 109.47618 * 120.00114 * 2 1 3 32 32 H 1.09002 * 109.46739 * 65.79172 * 5 3 2 33 33 H 1.09002 * 109.47036 * 305.79907 * 5 3 2 34 34 H 1.08998 * 109.46925 * 270.00420 * 9 8 6 35 35 H 1.09000 * 109.46999 * 30.00537 * 9 8 6 36 36 H 1.08998 * 109.47098 * 150.00829 * 9 8 6 37 37 H 1.08997 * 109.46881 * 54.73261 * 12 10 8 38 38 H 1.09003 * 109.46653 * 174.72361 * 12 10 8 39 39 H 1.08991 * 109.47398 * 294.72937 * 12 10 8 40 40 H 0.96999 * 119.99596 * 180.02562 * 16 15 13 41 41 H 1.08001 * 119.99660 * 0.02562 * 22 21 3 42 42 H 1.08001 * 119.99927 * 180.27532 * 23 22 21 43 43 H 1.07999 * 119.99986 * 179.83410 * 24 23 22 44 44 H 1.08007 * 120.00037 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.00149 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5960 1.9848 0.8349 5 6 3.5633 1.4450 0.1427 6 6 4.0522 2.8633 0.2857 7 8 3.2554 3.7729 0.3784 8 7 5.3749 3.1208 0.3103 9 6 6.3374 2.0220 0.1986 10 6 5.8501 4.4996 0.4487 11 1 4.9959 5.1733 0.5170 12 6 6.6967 4.8721 -0.7701 13 6 6.6863 4.6198 1.6968 14 1 7.3077 3.7948 2.0120 15 6 6.6579 5.7833 2.4362 16 7 7.4512 5.9211 3.4760 17 14 5.4927 7.1638 1.9609 18 1 4.2338 7.0389 2.7388 19 1 6.1292 8.4726 2.2562 20 1 5.1885 7.0775 0.5100 21 6 1.6556 2.1113 -1.2946 22 6 2.1090 1.6018 -2.4970 23 6 1.7528 2.2127 -3.6848 24 6 0.9507 3.3383 -3.6697 25 6 0.5016 3.8509 -2.4670 26 6 0.8541 3.2375 -1.2795 27 1 -0.3633 -1.0235 0.0922 28 1 -0.3634 0.5916 0.8402 29 1 -0.3633 0.4318 -0.9326 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.0118 0.9935 -0.7422 33 1 3.8464 0.8722 1.0259 34 1 6.5770 1.6464 1.1934 35 1 5.9046 1.2192 -0.3984 36 1 7.2465 2.3829 -0.2823 37 1 6.1219 4.6958 -1.6792 38 1 6.9722 5.9252 -0.7130 39 1 7.5989 4.2608 -0.7863 40 1 7.4309 6.7395 3.9964 41 1 2.7385 0.7243 -2.5085 42 1 2.1035 1.8120 -4.6244 43 1 0.6746 3.8171 -4.5976 44 1 -0.1249 4.7307 -2.4552 45 1 0.5029 3.6377 -0.3399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264082376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:59 Heat of formation + Delta-G solvation = -25.970592 kcal Electronic energy + Delta-G solvation = -23860.382348 eV Core-core repulsion = 20649.244791 eV Total energy + Delta-G solvation = -3211.137557 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.90767 -38.62321 -35.91671 -35.07729 -32.68555 -31.08297 -30.71568 -30.42923 -29.00750 -26.16531 -25.24544 -24.63963 -22.85520 -22.15440 -20.99714 -19.65498 -18.11932 -17.19749 -16.86425 -16.04275 -15.64176 -15.35205 -14.74107 -14.57038 -14.27185 -14.03529 -13.82174 -13.21673 -13.11970 -12.88630 -12.60931 -12.44331 -12.32225 -12.23466 -12.06517 -11.80226 -11.71394 -11.45147 -11.13232 -11.05821 -11.04292 -10.98779 -10.67032 -10.48770 -10.44444 -10.39379 -9.74151 -9.23751 -8.91360 -8.69453 -8.58305 -8.42326 -7.58277 -6.14979 -4.16313 1.56534 1.63453 3.31249 3.39702 3.44006 3.47196 3.91480 3.99172 4.40314 4.75483 4.79346 5.04064 5.12059 5.13728 5.21807 5.24774 5.29162 5.36590 5.47395 5.58124 5.66946 5.71989 5.75355 5.85083 5.92436 5.93391 5.97274 6.04861 6.17156 6.19614 6.26831 6.27328 6.36714 6.38722 6.43676 6.62909 6.64615 6.70826 6.91524 6.98498 7.12495 7.21727 7.53127 7.69857 8.21469 8.55957 8.87403 9.05543 9.48549 10.97199 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017667 B = 0.005026 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.453086 B = 5569.366460 C = 5960.110141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.038 4.038 4 H 0.088 0.912 5 C -0.134 4.134 6 C 0.504 3.496 7 O -0.551 6.551 8 N -0.592 5.592 9 C 0.086 3.914 10 C 0.221 3.779 11 H 0.067 0.933 12 C -0.146 4.146 13 C -0.522 4.522 14 H 0.076 0.924 15 C 0.078 3.922 16 N -0.894 5.894 17 Si 0.874 3.126 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.260 1.260 21 C -0.054 4.054 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.131 4.131 25 C -0.123 4.123 26 C -0.088 4.088 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.265 0.735 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.197 -11.805 -11.503 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.056 4.056 4 H 0.106 0.894 5 C -0.174 4.174 6 C 0.291 3.709 7 O -0.430 6.430 8 N -0.323 5.323 9 C -0.058 4.058 10 C 0.120 3.880 11 H 0.085 0.915 12 C -0.205 4.205 13 C -0.560 4.560 14 H 0.094 0.906 15 C -0.125 4.125 16 N -0.531 5.531 17 Si 0.701 3.299 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.185 1.185 21 C -0.054 4.054 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.149 4.149 25 C -0.141 4.141 26 C -0.106 4.106 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.524 -11.183 -11.298 19.634 hybrid contribution -0.225 0.809 -0.085 0.844 sum -11.748 -10.374 -11.383 19.371 Atomic orbital electron populations 1.21750 0.95709 1.01148 1.02120 1.21599 0.96197 0.95422 1.02038 1.20062 0.94175 0.95484 0.95909 0.89399 1.21814 0.95878 0.96126 1.03569 1.20396 0.82708 0.90651 0.77116 1.90621 1.54215 1.47089 1.51056 1.48277 1.04684 1.09146 1.70199 1.21563 0.93821 0.89400 1.00967 1.19353 0.95049 0.79318 0.94264 0.91533 1.22209 0.99873 1.01079 0.97352 1.21141 1.25712 1.01943 1.07247 0.90562 1.24957 0.95020 0.98205 0.94322 1.69899 1.37671 1.27402 1.18105 0.86882 0.81567 0.81395 0.80057 1.19981 1.21343 1.18490 1.19669 0.96266 0.95330 0.94142 1.20911 1.00602 1.00294 0.92196 1.21000 0.99030 0.96588 0.97718 1.21032 0.99155 0.96970 0.97708 1.21107 1.00557 0.99727 0.92726 1.21027 0.97053 0.94578 0.97912 0.93042 0.92676 0.92623 0.91860 0.91593 0.89597 0.88974 0.92962 0.92855 0.91239 0.95561 0.92801 0.93250 0.92491 0.86644 0.86696 0.86777 0.86610 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.65 37.16 0.36 -1.11 16 2 C -0.12 -1.17 5.30 -26.73 -0.14 -1.31 16 3 C -0.04 -0.50 1.68 -91.77 -0.15 -0.65 16 4 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 5 C -0.13 -1.90 3.79 -27.88 -0.11 -2.01 16 6 C 0.50 10.05 7.36 -10.99 -0.08 9.97 16 7 O -0.55 -12.85 13.79 5.55 0.08 -12.78 16 8 N -0.59 -12.32 2.75 -175.26 -0.48 -12.81 16 9 C 0.09 1.42 9.36 59.85 0.56 1.98 16 10 C 0.22 5.39 2.25 -69.08 -0.16 5.24 16 11 H 0.07 1.79 3.88 -51.92 -0.20 1.59 16 12 C -0.15 -3.16 9.04 37.16 0.34 -2.83 16 13 C -0.52 -14.49 8.82 -34.43 -0.30 -14.80 16 14 H 0.08 2.24 7.66 -52.49 -0.40 1.84 16 15 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 16 N -0.89 -27.09 13.96 55.43 0.77 -26.31 16 17 Si 0.87 22.49 27.26 -169.99 -4.63 17.86 16 18 H -0.27 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.26 -6.55 6.42 56.52 0.36 -6.19 16 21 C -0.05 -0.77 2.95 -104.63 -0.31 -1.08 16 22 C -0.12 -1.57 8.58 -39.58 -0.34 -1.91 16 23 C -0.13 -1.55 10.05 -39.59 -0.40 -1.95 16 24 C -0.13 -1.65 10.05 -39.59 -0.40 -2.05 16 25 C -0.12 -1.70 10.05 -39.59 -0.40 -2.09 16 26 C -0.09 -1.32 8.81 -39.59 -0.35 -1.67 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.58 7.57 -51.93 -0.39 0.19 16 30 H 0.06 0.59 7.22 -51.93 -0.38 0.21 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.05 6.14 -51.93 -0.32 0.73 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.67 6.28 -51.93 -0.33 0.35 16 36 H 0.07 1.13 6.54 -51.93 -0.34 0.79 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.05 1.17 8.13 -51.93 -0.42 0.75 16 39 H 0.05 0.99 6.89 -51.93 -0.36 0.63 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.12 1.26 7.04 -52.49 -0.37 0.89 16 42 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.12 1.84 7.95 -52.49 -0.42 1.42 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -32.76 355.82 -8.17 -40.94 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.29 Total: 1.85 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -1.98 Total: -14.11 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.29 Total: -39.12 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.78 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.63 Total: 17.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.76 -8.17 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264082376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.968 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds