Wall clock time and date at job start Tue Mar 31 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46699 * 2 1 4 4 H 1.09005 * 109.46741 * 54.33134 * 3 2 1 5 5 C 1.53002 * 109.46866 * 174.32261 * 3 2 1 6 6 C 1.50697 * 109.47159 * 185.79420 * 5 3 2 7 7 O 1.21284 * 119.99844 * 5.69537 * 6 5 3 8 8 N 1.34775 * 119.99878 * 185.70625 * 6 5 3 9 9 C 1.46502 * 120.00230 * 359.97438 * 8 6 5 10 10 C 1.46500 * 119.99887 * 179.97438 * 8 6 5 11 11 H 1.09007 * 109.47229 * 359.97438 * 10 8 6 12 12 C 1.52999 * 109.47163 * 239.99240 * 10 8 6 13 13 C 1.50708 * 109.46937 * 119.99298 * 10 8 6 14 14 H 1.07991 * 120.00081 * 34.67751 * 13 10 8 15 15 C 1.37881 * 119.99808 * 214.67030 * 13 10 8 16 16 N 1.31515 * 119.99845 * 184.37785 * 15 13 10 17 17 Si 1.86796 * 120.00032 * 4.37948 * 15 13 10 18 18 H 1.48501 * 109.47272 * 94.26093 * 17 15 13 19 19 H 1.48505 * 109.47470 * 214.26134 * 17 15 13 20 20 H 1.48498 * 109.47539 * 334.26207 * 17 15 13 21 21 C 1.50695 * 109.47433 * 294.32653 * 3 2 1 22 22 C 1.38237 * 120.00082 * 299.72544 * 21 3 2 23 23 C 1.38233 * 119.99959 * 179.78725 * 22 21 3 24 24 C 1.38231 * 120.00101 * 0.44262 * 23 22 21 25 25 C 1.38234 * 119.99811 * 359.81360 * 24 23 22 26 26 C 1.38229 * 120.00073 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47180 * 185.14996 * 1 2 3 28 28 H 1.08995 * 109.47458 * 305.14723 * 1 2 3 29 29 H 1.09003 * 109.47071 * 65.15574 * 1 2 3 30 30 H 1.09004 * 109.46994 * 240.00473 * 2 1 3 31 31 H 1.08994 * 109.47618 * 120.00114 * 2 1 3 32 32 H 1.09002 * 109.46739 * 65.79172 * 5 3 2 33 33 H 1.09002 * 109.47036 * 305.79907 * 5 3 2 34 34 H 1.08998 * 109.46925 * 270.00420 * 9 8 6 35 35 H 1.09000 * 109.46999 * 30.00537 * 9 8 6 36 36 H 1.08998 * 109.47098 * 150.00829 * 9 8 6 37 37 H 1.08997 * 109.46881 * 54.73261 * 12 10 8 38 38 H 1.09003 * 109.46653 * 174.72361 * 12 10 8 39 39 H 1.08991 * 109.47398 * 294.72937 * 12 10 8 40 40 H 0.96999 * 119.99596 * 180.02562 * 16 15 13 41 41 H 1.08001 * 119.99660 * 0.02562 * 22 21 3 42 42 H 1.08001 * 119.99927 * 180.27532 * 23 22 21 43 43 H 1.07999 * 119.99986 * 179.83410 * 24 23 22 44 44 H 1.08007 * 120.00037 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.00149 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5960 1.9848 0.8349 5 6 3.5633 1.4450 0.1427 6 6 4.0522 2.8633 0.2857 7 8 3.2554 3.7729 0.3784 8 7 5.3749 3.1208 0.3103 9 6 6.3374 2.0220 0.1986 10 6 5.8501 4.4996 0.4487 11 1 4.9959 5.1733 0.5170 12 6 6.6967 4.8721 -0.7701 13 6 6.6863 4.6198 1.6968 14 1 7.3077 3.7948 2.0120 15 6 6.6579 5.7833 2.4362 16 7 7.4512 5.9211 3.4760 17 14 5.4927 7.1638 1.9609 18 1 4.2338 7.0389 2.7388 19 1 6.1292 8.4726 2.2562 20 1 5.1885 7.0775 0.5100 21 6 1.6556 2.1113 -1.2946 22 6 2.1090 1.6018 -2.4970 23 6 1.7528 2.2127 -3.6848 24 6 0.9507 3.3383 -3.6697 25 6 0.5016 3.8509 -2.4670 26 6 0.8541 3.2375 -1.2795 27 1 -0.3633 -1.0235 0.0922 28 1 -0.3634 0.5916 0.8402 29 1 -0.3633 0.4318 -0.9326 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.0118 0.9935 -0.7422 33 1 3.8464 0.8722 1.0259 34 1 6.5770 1.6464 1.1934 35 1 5.9046 1.2192 -0.3984 36 1 7.2465 2.3829 -0.2823 37 1 6.1219 4.6958 -1.6792 38 1 6.9722 5.9252 -0.7130 39 1 7.5989 4.2608 -0.7863 40 1 7.4309 6.7395 3.9964 41 1 2.7385 0.7243 -2.5085 42 1 2.1035 1.8120 -4.6244 43 1 0.6746 3.8171 -4.5976 44 1 -0.1249 4.7307 -2.4552 45 1 0.5029 3.6377 -0.3399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264082376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:58 Heat of formation + Delta-G solvation = -44.175190 kcal Electronic energy + Delta-G solvation = -23861.171759 eV Core-core repulsion = 20649.244791 eV Total energy + Delta-G solvation = -3211.926968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.16728 -39.91778 -37.28631 -36.43384 -34.70844 -32.59799 -31.69797 -31.58634 -30.21274 -27.62292 -27.22580 -25.80241 -23.78571 -23.12840 -22.62459 -20.75308 -19.68265 -19.21522 -17.89935 -17.65771 -17.12792 -16.59206 -16.20591 -15.83369 -15.52957 -15.16264 -14.93111 -14.75839 -14.40040 -14.24496 -14.13011 -14.08658 -13.63602 -13.35469 -13.30841 -13.16773 -13.07388 -12.94496 -12.66173 -12.55737 -12.29943 -12.15987 -12.00487 -11.90265 -11.82407 -11.45353 -11.38003 -11.24048 -10.79532 -10.49664 -9.70337 -9.45967 -9.24036 -8.38631 -6.41101 0.57459 0.62286 1.22998 1.29500 1.39353 1.92569 2.25295 2.40061 2.98652 3.04155 3.74464 3.78048 3.89972 4.18055 4.22036 4.31246 4.35849 4.36041 4.44829 4.51989 4.56538 4.66625 4.68431 4.72157 4.74723 4.75834 4.83404 4.88830 5.00216 5.04541 5.09140 5.14375 5.16043 5.23991 5.29297 5.37054 5.39113 5.47273 5.54666 5.66953 5.70534 5.88244 5.90588 6.17957 6.24202 6.64102 6.86748 7.24826 7.51864 8.77110 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017667 B = 0.005026 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.453086 B = 5569.366460 C = 5960.110141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C -0.035 4.035 4 H 0.058 0.942 5 C -0.122 4.122 6 C 0.492 3.508 7 O -0.593 6.593 8 N -0.603 5.603 9 C 0.083 3.917 10 C 0.220 3.780 11 H 0.039 0.961 12 C -0.138 4.138 13 C -0.515 4.515 14 H 0.052 0.948 15 C 0.029 3.971 16 N -0.935 5.935 17 Si 0.924 3.076 18 H -0.287 1.287 19 H -0.275 1.275 20 H -0.254 1.254 21 C -0.063 4.063 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.118 4.118 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.267 0.733 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.137 0.863 44 H 0.123 0.877 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.244 -14.099 -13.965 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.054 4.054 4 H 0.076 0.924 5 C -0.162 4.162 6 C 0.282 3.718 7 O -0.474 6.474 8 N -0.334 5.334 9 C -0.060 4.060 10 C 0.118 3.882 11 H 0.057 0.943 12 C -0.196 4.196 13 C -0.553 4.553 14 H 0.071 0.929 15 C -0.170 4.170 16 N -0.575 5.575 17 Si 0.750 3.250 18 H -0.213 1.213 19 H -0.200 1.200 20 H -0.178 1.178 21 C -0.063 4.063 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.136 4.136 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.155 0.845 44 H 0.141 0.859 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.563 -13.506 -13.778 22.493 hybrid contribution -0.235 1.462 0.672 1.626 sum -11.798 -12.044 -13.106 21.355 Atomic orbital electron populations 1.21730 0.95750 1.01957 1.01147 1.21571 0.96112 0.93167 1.03595 1.20045 0.93536 0.97222 0.94627 0.92374 1.21849 0.96293 0.92148 1.05861 1.21438 0.81888 0.92730 0.75758 1.90610 1.55196 1.49035 1.52602 1.48268 1.06026 1.08683 1.70413 1.21800 0.93366 0.89206 1.01605 1.19099 0.93760 0.81469 0.93920 0.94295 1.22057 1.00122 1.00844 0.96623 1.21380 1.25018 1.00723 1.08223 0.92950 1.25592 0.96367 1.00454 0.94617 1.69992 1.39560 1.28338 1.19598 0.86080 0.79302 0.79723 0.79866 1.21305 1.20008 1.17798 1.19812 0.96243 0.95102 0.95188 1.21224 1.00643 1.01032 0.91619 1.21409 0.98130 0.96051 0.98853 1.21360 0.98951 0.97315 0.97973 1.21318 1.01079 1.00239 0.93031 1.21072 0.98856 0.96021 0.97646 0.91192 0.93775 0.93637 0.89935 0.90234 0.86386 0.86959 0.93574 0.88127 0.91210 0.93752 0.93571 0.91817 0.92337 0.83980 0.83831 0.84527 0.85922 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.65 71.98 0.69 -1.96 16 2 C -0.11 -1.86 5.30 30.60 0.16 -1.70 16 3 C -0.04 -0.89 1.68 -11.54 -0.02 -0.91 16 4 H 0.06 1.79 7.58 -2.38 -0.02 1.78 16 5 C -0.12 -3.11 3.79 29.85 0.11 -3.00 16 6 C 0.49 19.06 7.36 87.66 0.65 19.71 16 7 O -0.59 -28.10 13.79 -3.04 -0.04 -28.14 16 8 N -0.60 -24.24 2.75 -826.78 -2.28 -26.52 16 9 C 0.08 2.48 9.36 127.77 1.20 3.68 16 10 C 0.22 10.67 2.25 44.25 0.10 10.77 16 11 H 0.04 2.12 3.88 -2.38 -0.01 2.11 16 12 C -0.14 -5.74 9.04 71.98 0.65 -5.09 16 13 C -0.51 -28.90 8.82 25.60 0.23 -28.68 16 14 H 0.05 3.13 7.66 -2.92 -0.02 3.11 16 15 C 0.03 1.70 5.47 84.66 0.46 2.16 16 16 N -0.94 -57.90 13.96 21.45 0.30 -57.60 16 17 Si 0.92 47.39 27.26 68.60 1.87 49.26 16 18 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 19 H -0.27 -13.36 7.11 99.48 0.71 -12.66 16 20 H -0.25 -12.61 6.42 99.48 0.64 -11.98 16 21 C -0.06 -1.72 2.95 -19.87 -0.06 -1.78 16 22 C -0.13 -2.88 8.58 22.27 0.19 -2.69 16 23 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 24 C -0.14 -3.24 10.05 22.27 0.22 -3.02 16 25 C -0.14 -3.82 10.05 22.27 0.22 -3.60 16 26 C -0.12 -3.65 8.81 22.27 0.20 -3.46 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 29 H 0.04 0.90 7.57 -2.39 -0.02 0.88 16 30 H 0.08 1.15 7.22 -2.38 -0.02 1.14 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.12 2.26 6.14 -2.39 -0.01 2.25 16 33 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 2.05 6.28 -2.39 -0.02 2.03 16 36 H 0.07 2.08 6.54 -2.39 -0.02 2.07 16 37 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.96 8.13 -2.39 -0.02 1.94 16 39 H 0.06 2.43 6.89 -2.39 -0.02 2.42 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.14 2.37 7.04 -2.91 -0.02 2.35 16 42 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 43 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 44 H 0.12 3.01 8.06 -2.91 -0.02 2.98 16 45 H 0.10 3.31 7.95 -2.91 -0.02 3.29 16 Total: -1.00 -73.80 355.82 5.97 -67.83 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.89 Total: 17.24 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 5.23 Total: -22.07 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -1.98 Total: -84.12 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.04 Total: -28.14 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.87 Total: 49.26 kcal Total: -73.80 5.97 -67.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264082376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.653 kcal (2) G-P(sol) polarization free energy of solvation -73.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds