Wall clock time and date at job start Tue Mar 31 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47450 * 2 1 4 4 H 1.08998 * 109.46618 * 305.00313 * 3 2 1 5 5 C 1.52991 * 109.47059 * 185.00305 * 3 2 1 6 6 C 1.50699 * 109.47554 * 65.00215 * 5 3 2 7 7 O 1.21281 * 119.99780 * 359.97438 * 6 5 3 8 8 N 1.34776 * 119.99873 * 180.02562 * 6 5 3 9 9 C 1.46492 * 120.00320 * 359.97438 * 8 6 5 10 10 C 1.46500 * 119.99725 * 180.02562 * 8 6 5 11 11 H 1.09003 * 109.47147 * 359.97438 * 10 8 6 12 12 C 1.53009 * 109.46773 * 239.99564 * 10 8 6 13 13 C 1.50699 * 109.47787 * 119.99574 * 10 8 6 14 14 H 1.07997 * 119.99542 * 5.35008 * 13 10 8 15 15 C 1.37873 * 120.00149 * 185.35708 * 13 10 8 16 16 N 1.31513 * 119.99945 * 5.15122 * 15 13 10 17 17 Si 1.86804 * 119.99910 * 185.15151 * 15 13 10 18 18 H 1.48500 * 109.47164 * 84.99518 * 17 15 13 19 19 H 1.48496 * 109.47169 * 204.99936 * 17 15 13 20 20 H 1.48498 * 109.47038 * 324.99819 * 17 15 13 21 21 C 1.50700 * 109.46829 * 64.99722 * 3 2 1 22 22 C 1.38234 * 119.99567 * 59.73541 * 21 3 2 23 23 C 1.38244 * 119.99594 * 179.80907 * 22 21 3 24 24 C 1.38232 * 119.99747 * 0.38866 * 23 22 21 25 25 C 1.38234 * 120.00322 * 359.86064 * 24 23 22 26 26 C 1.38231 * 119.99937 * 359.95698 * 25 24 23 27 27 H 1.08997 * 109.46949 * 300.00156 * 1 2 3 28 28 H 1.09005 * 109.46742 * 59.99753 * 1 2 3 29 29 H 1.08991 * 109.47325 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46778 * 240.00047 * 2 1 3 31 31 H 1.08997 * 109.47342 * 120.00351 * 2 1 3 32 32 H 1.09000 * 109.47287 * 304.99557 * 5 3 2 33 33 H 1.09001 * 109.47203 * 185.00128 * 5 3 2 34 34 H 1.09005 * 109.47450 * 270.00703 * 9 8 6 35 35 H 1.09000 * 109.47030 * 30.00990 * 9 8 6 36 36 H 1.09001 * 109.47202 * 150.00567 * 9 8 6 37 37 H 1.09002 * 109.46614 * 174.89286 * 12 10 8 38 38 H 1.09000 * 109.46775 * 294.88488 * 12 10 8 39 39 H 1.08994 * 109.46964 * 54.88884 * 12 10 8 40 40 H 0.97002 * 119.99743 * 180.02562 * 16 15 13 41 41 H 1.07997 * 120.00563 * 359.97438 * 22 21 3 42 42 H 1.08000 * 120.00223 * 180.22862 * 23 22 21 43 43 H 1.08007 * 119.99867 * 179.83949 * 24 23 22 44 44 H 1.08002 * 119.99821 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00189 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1258 6 6 3.9589 0.8821 -1.4673 7 8 3.1044 0.5156 -2.2460 8 7 5.2611 0.7856 -1.8013 9 6 6.2933 1.2277 -0.8606 10 6 5.6442 0.2396 -3.1057 11 1 4.7478 -0.0323 -3.6632 12 6 6.5147 -1.0022 -2.9030 13 6 6.4201 1.2766 -3.8763 14 1 6.6836 2.2128 -3.4068 15 6 6.7933 1.0302 -5.1804 16 7 6.3865 -0.0646 -5.7851 17 14 7.8767 2.2513 -6.0885 18 1 9.3023 1.9745 -5.7781 19 1 7.6537 2.1190 -7.5507 20 1 7.5353 3.6311 -5.6586 21 6 1.6414 2.1162 1.2877 22 6 2.0722 1.6048 2.4975 23 6 1.7097 2.2251 3.6785 24 6 0.9098 3.3521 3.6500 25 6 0.4747 3.8605 2.4405 26 6 0.8403 3.2424 1.2593 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.9954 0.8310 0.6658 33 1 3.9356 2.4653 -0.0367 34 1 6.5151 2.2809 -1.0330 35 1 5.9357 1.0940 0.1604 36 1 7.1973 0.6370 -1.0091 37 1 6.7245 -1.4605 -3.8695 38 1 7.4518 -0.7151 -2.4260 39 1 5.9880 -1.7156 -2.2692 40 1 6.6494 -0.2381 -6.7025 41 1 2.6942 0.7222 2.5199 42 1 2.0494 1.8277 4.6236 43 1 0.6244 3.8352 4.5729 44 1 -0.1506 4.7408 2.4183 45 1 0.5007 3.6398 0.3143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264082381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:03 Heat of formation + Delta-G solvation = -29.249376 kcal Electronic energy + Delta-G solvation = -23275.236338 eV Core-core repulsion = 20063.956602 eV Total energy + Delta-G solvation = -3211.279736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92928 -38.81616 -35.91004 -34.85702 -32.82400 -30.96004 -30.85997 -30.15159 -28.74721 -26.09278 -25.18888 -24.55022 -22.91964 -22.26584 -21.16271 -19.71730 -18.13642 -17.13724 -16.48810 -16.05255 -15.52293 -15.08201 -14.92108 -14.71045 -14.28891 -14.22282 -13.58752 -13.43556 -13.14080 -12.91972 -12.57982 -12.54628 -12.41665 -12.05285 -11.74769 -11.63510 -11.54244 -11.26966 -11.11179 -11.00573 -10.84014 -10.73062 -10.70173 -10.40800 -10.37925 -10.23631 -10.16863 -9.16584 -8.96316 -8.84498 -8.63919 -8.40275 -7.54706 -6.06540 -4.12426 1.33066 1.35754 3.27582 3.34172 3.36101 3.45816 3.73641 4.01794 4.41531 4.76059 4.76357 4.93625 5.04594 5.10021 5.24173 5.25191 5.35818 5.42127 5.48642 5.52180 5.57265 5.72997 5.77382 5.91843 5.95365 5.98483 6.07149 6.10587 6.17709 6.28112 6.31462 6.40255 6.43830 6.46912 6.66648 6.72623 6.75462 6.77113 6.97601 7.02492 7.40852 7.56777 7.73206 7.96098 8.20068 8.57688 8.87759 9.11873 9.53617 11.00740 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024166 B = 0.003594 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.376826 B = 7788.919630 C = 8049.373247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C -0.034 4.034 4 H 0.086 0.914 5 C -0.132 4.132 6 C 0.503 3.497 7 O -0.549 6.549 8 N -0.595 5.595 9 C 0.087 3.913 10 C 0.256 3.744 11 H 0.069 0.931 12 C -0.141 4.141 13 C -0.527 4.527 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.896 3.104 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.063 4.063 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.132 4.132 25 C -0.120 4.120 26 C -0.117 4.117 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.032 0.968 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 3.798 17.866 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.052 4.052 4 H 0.104 0.896 5 C -0.172 4.172 6 C 0.290 3.710 7 O -0.428 6.428 8 N -0.326 5.326 9 C -0.058 4.058 10 C 0.156 3.844 11 H 0.087 0.913 12 C -0.200 4.200 13 C -0.566 4.566 14 H 0.076 0.924 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.063 4.063 22 C -0.134 4.134 23 C -0.138 4.138 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.135 4.135 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.202 3.494 17.251 19.418 hybrid contribution 0.837 0.791 -0.434 1.231 sum -7.364 4.285 16.817 18.852 Atomic orbital electron populations 1.21715 0.96193 1.01043 1.01354 1.21711 0.95780 0.95235 1.03053 1.19989 0.94095 0.96978 0.94174 0.89556 1.21748 0.96294 1.02484 0.96649 1.20362 0.82950 0.79301 0.88339 1.90617 1.49235 1.50348 1.52617 1.48239 1.04578 1.61042 1.18740 1.21548 0.92870 0.99920 0.91420 1.18926 0.96385 0.91157 0.77943 0.91343 1.22028 0.98561 0.98053 1.01316 1.21292 1.35531 1.02279 0.97454 0.92358 1.24900 0.96108 0.95635 0.97063 1.69941 1.44204 1.25681 1.12639 0.86553 0.80777 0.81471 0.78850 1.20544 1.21175 1.20005 1.19978 0.96344 0.94957 0.94996 1.21028 1.00369 1.00023 0.91953 1.21114 0.98522 0.96176 0.97998 1.21087 0.99070 0.97064 0.97744 1.21117 1.00182 0.99872 0.92615 1.21130 0.98356 0.95712 0.98297 0.93342 0.92734 0.93220 0.89106 0.92855 0.89608 0.89502 0.93394 0.92954 0.91043 0.90402 0.94850 0.96685 0.92716 0.86153 0.86381 0.86535 0.86372 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.73 37.16 0.36 -1.49 16 2 C -0.12 -1.70 5.08 -26.73 -0.14 -1.83 16 3 C -0.03 -0.47 1.69 -91.78 -0.15 -0.62 16 4 H 0.09 1.34 7.69 -51.93 -0.40 0.94 16 5 C -0.13 -1.93 3.47 -27.89 -0.10 -2.03 16 6 C 0.50 10.12 7.35 -10.99 -0.08 10.04 16 7 O -0.55 -13.01 13.32 5.56 0.07 -12.93 16 8 N -0.59 -12.54 2.75 -175.26 -0.48 -13.02 16 9 C 0.09 1.44 9.43 59.84 0.56 2.00 16 10 C 0.26 6.52 2.51 -69.08 -0.17 6.35 16 11 H 0.07 2.04 6.88 -51.93 -0.36 1.68 16 12 C -0.14 -3.32 8.84 37.16 0.33 -2.99 16 13 C -0.53 -14.32 8.34 -34.44 -0.29 -14.61 16 14 H 0.06 1.56 7.51 -52.49 -0.39 1.17 16 15 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 16 N -0.89 -25.46 11.99 55.43 0.66 -24.80 16 17 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.06 -0.76 3.76 -104.63 -0.39 -1.15 16 22 C -0.12 -1.27 8.71 -39.58 -0.34 -1.61 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.13 -1.26 10.05 -39.58 -0.40 -1.65 16 25 C -0.12 -1.21 10.05 -39.59 -0.40 -1.60 16 26 C -0.12 -1.33 9.67 -39.59 -0.38 -1.72 16 27 H 0.05 0.58 7.38 -51.93 -0.38 0.19 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.57 5.88 -51.93 -0.31 1.26 16 31 H 0.05 0.68 7.21 -51.93 -0.37 0.30 16 32 H 0.09 1.09 6.84 -51.93 -0.36 0.73 16 33 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 34 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 35 H 0.05 0.68 6.44 -51.93 -0.33 0.34 16 36 H 0.07 1.19 6.54 -51.93 -0.34 0.85 16 37 H 0.08 2.00 6.84 -51.93 -0.36 1.65 16 38 H 0.03 0.72 6.88 -51.93 -0.36 0.37 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.12 1.20 7.13 -52.49 -0.37 0.83 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.12 1.29 7.95 -52.49 -0.42 0.88 16 LS Contribution 357.19 15.07 5.38 5.38 Total: -1.00 -30.78 357.19 -8.73 -39.51 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.26 Total: 2.50 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -2.08 Total: -12.78 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.18 Total: -37.82 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.07 Total: -12.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.78 -8.73 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264082381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.260 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds