Wall clock time and date at job start Tue Mar 31 2020 05:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47450 * 2 1 4 4 H 1.08998 * 109.46618 * 305.00313 * 3 2 1 5 5 C 1.52991 * 109.47059 * 185.00305 * 3 2 1 6 6 C 1.50699 * 109.47554 * 65.00215 * 5 3 2 7 7 O 1.21281 * 119.99780 * 359.97438 * 6 5 3 8 8 N 1.34776 * 119.99873 * 180.02562 * 6 5 3 9 9 C 1.46492 * 120.00320 * 359.97438 * 8 6 5 10 10 C 1.46500 * 119.99725 * 180.02562 * 8 6 5 11 11 H 1.09003 * 109.47147 * 359.97438 * 10 8 6 12 12 C 1.53009 * 109.46773 * 239.99564 * 10 8 6 13 13 C 1.50699 * 109.47787 * 119.99574 * 10 8 6 14 14 H 1.07997 * 119.99542 * 5.35008 * 13 10 8 15 15 C 1.37873 * 120.00149 * 185.35708 * 13 10 8 16 16 N 1.31513 * 119.99945 * 5.15122 * 15 13 10 17 17 Si 1.86804 * 119.99910 * 185.15151 * 15 13 10 18 18 H 1.48500 * 109.47164 * 84.99518 * 17 15 13 19 19 H 1.48496 * 109.47169 * 204.99936 * 17 15 13 20 20 H 1.48498 * 109.47038 * 324.99819 * 17 15 13 21 21 C 1.50700 * 109.46829 * 64.99722 * 3 2 1 22 22 C 1.38234 * 119.99567 * 59.73541 * 21 3 2 23 23 C 1.38244 * 119.99594 * 179.80907 * 22 21 3 24 24 C 1.38232 * 119.99747 * 0.38866 * 23 22 21 25 25 C 1.38234 * 120.00322 * 359.86064 * 24 23 22 26 26 C 1.38231 * 119.99937 * 359.95698 * 25 24 23 27 27 H 1.08997 * 109.46949 * 300.00156 * 1 2 3 28 28 H 1.09005 * 109.46742 * 59.99753 * 1 2 3 29 29 H 1.08991 * 109.47325 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46778 * 240.00047 * 2 1 3 31 31 H 1.08997 * 109.47342 * 120.00351 * 2 1 3 32 32 H 1.09000 * 109.47287 * 304.99557 * 5 3 2 33 33 H 1.09001 * 109.47203 * 185.00128 * 5 3 2 34 34 H 1.09005 * 109.47450 * 270.00703 * 9 8 6 35 35 H 1.09000 * 109.47030 * 30.00990 * 9 8 6 36 36 H 1.09001 * 109.47202 * 150.00567 * 9 8 6 37 37 H 1.09002 * 109.46614 * 174.89286 * 12 10 8 38 38 H 1.09000 * 109.46775 * 294.88488 * 12 10 8 39 39 H 1.08994 * 109.46964 * 54.88884 * 12 10 8 40 40 H 0.97002 * 119.99743 * 180.02562 * 16 15 13 41 41 H 1.07997 * 120.00563 * 359.97438 * 22 21 3 42 42 H 1.08000 * 120.00223 * 180.22862 * 23 22 21 43 43 H 1.08007 * 119.99867 * 179.83949 * 24 23 22 44 44 H 1.08002 * 119.99821 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00189 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1258 6 6 3.9589 0.8821 -1.4673 7 8 3.1044 0.5156 -2.2460 8 7 5.2611 0.7856 -1.8013 9 6 6.2933 1.2277 -0.8606 10 6 5.6442 0.2396 -3.1057 11 1 4.7478 -0.0323 -3.6632 12 6 6.5147 -1.0022 -2.9030 13 6 6.4201 1.2766 -3.8763 14 1 6.6836 2.2128 -3.4068 15 6 6.7933 1.0302 -5.1804 16 7 6.3865 -0.0646 -5.7851 17 14 7.8767 2.2513 -6.0885 18 1 9.3023 1.9745 -5.7781 19 1 7.6537 2.1190 -7.5507 20 1 7.5353 3.6311 -5.6586 21 6 1.6414 2.1162 1.2877 22 6 2.0722 1.6048 2.4975 23 6 1.7097 2.2251 3.6785 24 6 0.9098 3.3521 3.6500 25 6 0.4747 3.8605 2.4405 26 6 0.8403 3.2424 1.2593 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.9954 0.8310 0.6658 33 1 3.9356 2.4653 -0.0367 34 1 6.5151 2.2809 -1.0330 35 1 5.9357 1.0940 0.1604 36 1 7.1973 0.6370 -1.0091 37 1 6.7245 -1.4605 -3.8695 38 1 7.4518 -0.7151 -2.4260 39 1 5.9880 -1.7156 -2.2692 40 1 6.6494 -0.2381 -6.7025 41 1 2.6942 0.7222 2.5199 42 1 2.0494 1.8277 4.6236 43 1 0.6244 3.8352 4.5729 44 1 -0.1506 4.7408 2.4183 45 1 0.5007 3.6398 0.3143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264082381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:02 Heat of formation + Delta-G solvation = -45.007574 kcal Electronic energy + Delta-G solvation = -23275.919664 eV Core-core repulsion = 20063.956602 eV Total energy + Delta-G solvation = -3211.963062 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15013 -40.03421 -37.37849 -36.24847 -34.77110 -32.17980 -31.72601 -31.46731 -30.10709 -27.55843 -27.25389 -25.77008 -23.78904 -23.15254 -22.83458 -20.85537 -19.70371 -18.55988 -18.11465 -17.38114 -17.03428 -16.45147 -16.27314 -15.87909 -15.67831 -15.21328 -14.87570 -14.61730 -14.42928 -14.12325 -14.09714 -13.70059 -13.58733 -13.39800 -13.33181 -13.06454 -12.88671 -12.80239 -12.68234 -12.59389 -12.26920 -12.16002 -12.09680 -11.93882 -11.80769 -11.51479 -11.41778 -11.16916 -10.57465 -10.37417 -9.72953 -9.51315 -9.27226 -8.15942 -6.30562 0.53413 0.58943 1.40349 1.41600 1.51030 1.88656 2.34622 2.52994 2.97543 3.13237 3.65004 3.76589 4.08187 4.14201 4.20122 4.25307 4.35028 4.38232 4.41924 4.56861 4.59679 4.70399 4.72762 4.74176 4.79479 4.86193 4.86716 4.95523 5.01348 5.06307 5.08706 5.16060 5.23391 5.26220 5.40050 5.45745 5.50517 5.58965 5.68150 5.70794 5.71484 5.85293 6.02804 6.15069 6.21042 6.78937 6.89983 7.34914 7.55266 8.90397 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024166 B = 0.003594 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.376826 B = 7788.919630 C = 8049.373247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C -0.027 4.027 4 H 0.058 0.942 5 C -0.116 4.116 6 C 0.493 3.507 7 O -0.595 6.595 8 N -0.604 5.604 9 C 0.082 3.918 10 C 0.260 3.740 11 H 0.012 0.988 12 C -0.126 4.126 13 C -0.539 4.539 14 H 0.060 0.940 15 C 0.014 3.986 16 N -0.920 5.920 17 Si 0.963 3.037 18 H -0.266 1.266 19 H -0.287 1.287 20 H -0.271 1.271 21 C -0.073 4.073 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.131 4.131 25 C -0.125 4.125 26 C -0.133 4.133 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.027 0.973 40 H 0.264 0.736 41 H 0.131 0.869 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.136 0.864 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.042 5.158 21.078 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.046 4.046 4 H 0.077 0.923 5 C -0.156 4.156 6 C 0.282 3.718 7 O -0.478 6.478 8 N -0.335 5.335 9 C -0.060 4.060 10 C 0.157 3.843 11 H 0.030 0.970 12 C -0.184 4.184 13 C -0.578 4.578 14 H 0.078 0.922 15 C -0.186 4.186 16 N -0.559 5.559 17 Si 0.788 3.212 18 H -0.191 1.191 19 H -0.213 1.213 20 H -0.196 1.196 21 C -0.074 4.074 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.149 4.149 25 C -0.142 4.142 26 C -0.151 4.151 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.154 0.846 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.434 4.869 20.504 22.347 hybrid contribution 0.526 0.375 -1.390 1.533 sum -6.908 5.244 19.114 20.990 Atomic orbital electron populations 1.21654 0.95294 1.01528 1.01233 1.21635 0.96640 0.95304 1.01943 1.19832 0.93401 0.96674 0.94663 0.92316 1.21724 0.97021 1.03244 0.93578 1.21365 0.82085 0.78393 0.89931 1.90601 1.50471 1.52130 1.54557 1.48265 1.06137 1.61107 1.17987 1.21805 0.91792 0.99921 0.92483 1.18504 0.93959 0.91899 0.79892 0.96995 1.21805 0.99120 0.97338 1.00179 1.21587 1.35500 1.02640 0.98035 0.92189 1.25760 0.97377 0.97408 0.98008 1.70088 1.45371 1.27538 1.12909 0.85499 0.79388 0.79089 0.77228 1.19082 1.21263 1.19550 1.19750 0.97771 0.95576 0.94257 1.21179 1.00565 1.00457 0.91781 1.21431 0.97956 0.95958 0.98541 1.21452 0.98192 0.96833 0.98448 1.21371 1.00191 1.00351 0.92329 1.21232 0.98891 0.96045 0.98954 0.92162 0.94067 0.92423 0.92922 0.90989 0.86571 0.87996 0.92989 0.88637 0.91120 0.93158 0.93028 0.95437 0.92739 0.85124 0.83970 0.84063 0.84598 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.73 71.98 0.70 -2.85 16 2 C -0.12 -3.34 5.08 30.60 0.16 -3.18 16 3 C -0.03 -0.74 1.69 -11.54 -0.02 -0.76 16 4 H 0.06 1.92 7.69 -2.39 -0.02 1.91 16 5 C -0.12 -3.26 3.47 29.84 0.10 -3.15 16 6 C 0.49 20.17 7.35 87.66 0.64 20.81 16 7 O -0.60 -29.97 13.32 -3.03 -0.04 -30.01 16 8 N -0.60 -25.55 2.75 -826.79 -2.28 -27.82 16 9 C 0.08 2.55 9.43 127.77 1.20 3.76 16 10 C 0.26 13.66 2.51 44.25 0.11 13.77 16 11 H 0.01 0.76 6.88 -2.39 -0.02 0.75 16 12 C -0.13 -6.03 8.84 71.99 0.64 -5.39 16 13 C -0.54 -29.77 8.34 25.60 0.21 -29.56 16 14 H 0.06 3.21 7.51 -2.91 -0.02 3.19 16 15 C 0.01 0.78 5.29 84.65 0.45 1.23 16 16 N -0.92 -54.56 11.99 21.45 0.26 -54.30 16 17 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 C -0.07 -1.65 3.76 -19.87 -0.07 -1.73 16 22 C -0.12 -2.29 8.71 22.27 0.19 -2.10 16 23 C -0.12 -1.91 10.05 22.27 0.22 -1.69 16 24 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 25 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 26 C -0.13 -2.88 9.67 22.27 0.22 -2.66 16 27 H 0.06 1.38 7.38 -2.39 -0.02 1.36 16 28 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.91 5.88 -2.38 -0.01 1.90 16 31 H 0.07 1.73 7.21 -2.39 -0.02 1.71 16 32 H 0.12 2.56 6.84 -2.39 -0.02 2.54 16 33 H 0.10 2.59 8.11 -2.39 -0.02 2.57 16 34 H 0.05 1.57 8.09 -2.38 -0.02 1.55 16 35 H 0.10 2.11 6.44 -2.39 -0.02 2.10 16 36 H 0.07 2.20 6.54 -2.39 -0.02 2.18 16 37 H 0.05 2.67 6.84 -2.39 -0.02 2.65 16 38 H 0.05 2.23 6.88 -2.39 -0.02 2.21 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.13 2.13 7.13 -2.91 -0.02 2.11 16 42 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 44 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.12 2.51 7.95 -2.91 -0.02 2.48 16 Total: -1.00 -70.47 357.19 6.12 -64.34 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.95 Total: 19.37 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 5.20 Total: -17.28 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -2.02 Total: -82.12 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.04 Total: -30.01 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -70.47 6.12 -64.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264082381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.334 kcal (2) G-P(sol) polarization free energy of solvation -70.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds