Wall clock time and date at job start Tue Mar 31 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46749 * 2 1 4 4 N 1.46504 * 109.47076 * 180.02562 * 3 2 1 5 5 C 1.34768 * 120.00210 * 89.99840 * 4 3 2 6 6 O 1.21544 * 120.00331 * 324.34528 * 5 4 3 7 7 C 1.47889 * 120.00160 * 144.34326 * 5 4 3 8 8 C 1.39921 * 120.02143 * 28.23513 * 7 5 4 9 9 C 1.38333 * 120.35822 * 180.02562 * 8 7 5 10 10 C 1.37759 * 120.41148 * 359.95596 * 9 8 7 11 11 C 1.40753 * 120.03615 * 0.04393 * 10 9 8 12 12 C 1.41440 * 120.17379 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00063 * 24.35362 * 12 11 10 14 14 C 1.39929 * 119.99638 * 204.35695 * 12 11 10 15 15 N 1.30829 * 120.00391 * 14.60813 * 14 12 11 16 16 Si 1.86804 * 119.99663 * 194.61117 * 14 12 11 17 17 H 1.48495 * 109.47492 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47132 * 120.00162 * 16 14 12 19 19 H 1.48499 * 109.47053 * 239.99588 * 16 14 12 20 20 C 1.38994 * 120.02640 * 208.25365 * 7 5 4 21 21 C 1.46503 * 119.99882 * 270.00068 * 4 3 2 22 22 C 1.53001 * 109.46993 * 257.26005 * 21 4 3 23 23 C 1.53003 * 109.47092 * 17.25566 * 21 4 3 24 24 C 1.53000 * 109.47365 * 137.25628 * 21 4 3 25 25 H 1.09001 * 109.47324 * 299.99586 * 1 2 3 26 26 H 1.08993 * 109.47565 * 59.99766 * 1 2 3 27 27 H 1.08997 * 109.46848 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46834 * 240.00247 * 2 1 3 29 29 H 1.09000 * 109.47427 * 119.99861 * 2 1 3 30 30 H 1.09003 * 109.47608 * 60.00151 * 3 2 1 31 31 H 1.09006 * 109.47704 * 299.99940 * 3 2 1 32 32 H 1.07997 * 119.82417 * 0.02562 * 8 7 5 33 33 H 1.07997 * 119.79627 * 179.97438 * 9 8 7 34 34 H 1.07995 * 119.97889 * 180.02562 * 10 9 8 35 35 H 0.97000 * 119.99691 * 179.97438 * 15 14 12 36 36 H 1.07994 * 120.20674 * 359.71021 * 20 7 5 37 37 H 1.08998 * 109.47341 * 92.55187 * 22 21 4 38 38 H 1.09000 * 109.46869 * 212.55249 * 22 21 4 39 39 H 1.09002 * 109.47164 * 332.54742 * 22 21 4 40 40 H 1.09000 * 109.47373 * 59.99888 * 23 21 4 41 41 H 1.08994 * 109.47144 * 180.02562 * 23 21 4 42 42 H 1.09002 * 109.46843 * 300.00027 * 23 21 4 43 43 H 1.09001 * 109.46799 * 43.92507 * 24 21 4 44 44 H 1.08995 * 109.46911 * 163.93102 * 24 21 4 45 45 H 1.09007 * 109.46752 * 283.93211 * 24 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1783 1.4428 -1.1680 6 8 3.7412 0.8293 -2.1219 7 6 5.4492 2.1894 -1.2885 8 6 6.2540 2.3882 -0.1613 9 6 7.4438 3.0860 -0.2659 10 6 7.8507 3.5925 -1.4807 11 6 7.0542 3.4025 -2.6256 12 6 7.4689 3.9217 -3.8742 13 1 8.5166 4.1056 -4.0615 14 6 6.5218 4.1972 -4.8667 15 7 5.2508 4.2516 -4.5611 16 14 7.0721 4.4871 -6.6281 17 1 8.5502 4.3718 -6.7103 18 1 6.4459 3.4743 -7.5155 19 1 6.6574 5.8464 -7.0589 20 6 5.8449 2.6946 -2.5214 21 6 4.2380 1.4424 1.2678 22 6 4.7685 2.8494 1.5504 23 6 3.3004 1.0143 2.3986 24 6 5.4104 0.4635 1.1793 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 5.9446 1.9946 0.7957 33 1 8.0577 3.2344 0.6101 34 1 8.7810 4.1358 -1.5545 35 1 4.5944 4.4429 -5.2491 36 1 5.2290 2.5399 -3.3950 37 1 4.0462 3.3949 2.1576 38 1 5.7150 2.7799 2.0866 39 1 4.9224 3.3757 0.6084 40 1 2.9224 0.0120 2.1973 41 1 3.8456 1.0146 3.3424 42 1 2.4651 1.7118 2.4617 43 1 5.9155 0.5873 0.2213 44 1 6.1125 0.6632 1.9888 45 1 5.0384 -0.5576 1.2646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267921989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:09 Heat of formation + Delta-G solvation = 40.020436 kcal Electronic energy + Delta-G solvation = -24386.551258 eV Core-core repulsion = 21178.275286 eV Total energy + Delta-G solvation = -3208.275971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.30527 -38.99318 -38.59116 -36.15158 -35.10715 -32.73277 -32.17038 -31.16701 -29.12218 -28.33041 -27.01833 -26.51123 -24.05737 -22.63060 -22.45034 -22.12643 -19.85161 -18.66802 -17.89988 -17.39585 -16.89861 -16.82236 -16.24260 -15.63376 -15.44133 -15.23126 -14.97081 -14.87472 -14.33241 -14.18538 -13.99985 -13.61664 -13.42600 -13.31761 -13.23263 -12.88957 -12.82328 -12.63482 -12.59830 -12.43218 -12.33877 -12.06430 -12.00067 -11.94455 -11.89778 -11.57166 -11.40495 -11.04933 -10.70051 -10.54285 -9.58333 -9.27563 -9.15520 -8.61840 -6.33989 0.43031 1.03761 1.33552 1.45433 1.49507 1.87457 2.10557 2.18136 2.76019 3.67594 3.71907 3.81989 3.90009 4.04307 4.08494 4.14535 4.39071 4.46378 4.52320 4.55317 4.65574 4.72976 4.79407 4.85582 4.86927 4.93650 5.01252 5.03625 5.08054 5.11878 5.16081 5.22146 5.26085 5.29937 5.34422 5.38938 5.49901 5.55252 5.58424 5.85875 5.96670 5.99068 6.09008 6.32540 6.47418 6.66043 6.90924 6.98230 7.19398 8.33104 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.005267 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.945473 B = 5314.510558 C = 6417.264491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.624 5.624 5 C 0.578 3.422 6 O -0.577 6.577 7 C -0.157 4.157 8 C -0.218 4.218 9 C -0.119 4.119 10 C -0.211 4.211 11 C 0.057 3.943 12 C -0.500 4.500 13 H 0.079 0.921 14 C 0.027 3.973 15 N -0.836 5.836 16 Si 0.983 3.017 17 H -0.252 1.252 18 H -0.272 1.272 19 H -0.263 1.263 20 C -0.131 4.131 21 C 0.160 3.840 22 C -0.179 4.179 23 C -0.148 4.148 24 C -0.195 4.195 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.041 0.959 32 H 0.209 0.791 33 H 0.138 0.862 34 H 0.103 0.897 35 H 0.283 0.717 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.438 -4.577 15.584 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C -0.002 4.002 4 N -0.358 5.358 5 C 0.370 3.630 6 O -0.456 6.456 7 C -0.160 4.160 8 C -0.236 4.236 9 C -0.137 4.137 10 C -0.230 4.230 11 C 0.055 3.945 12 C -0.530 4.530 13 H 0.097 0.903 14 C -0.186 4.186 15 N -0.463 5.463 16 Si 0.803 3.197 17 H -0.176 1.176 18 H -0.197 1.197 19 H -0.188 1.188 20 C -0.151 4.151 21 C 0.077 3.923 22 C -0.236 4.236 23 C -0.205 4.205 24 C -0.251 4.251 25 H 0.095 0.905 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.059 0.941 32 H 0.225 0.775 33 H 0.156 0.844 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.124 0.876 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.906 -4.840 14.994 16.826 hybrid contribution 0.189 0.366 -1.786 1.833 sum -5.717 -4.474 13.207 15.071 Atomic orbital electron populations 1.21674 0.93716 1.02431 1.02276 1.22011 0.97213 0.96558 1.01845 1.21617 0.78407 0.97651 1.02500 1.47815 1.06418 1.76740 1.04827 1.18768 0.84429 0.77670 0.82118 1.90621 1.70721 1.42359 1.41940 1.19952 0.96372 1.03900 0.95823 1.23594 0.95517 1.04170 1.00286 1.20974 0.96934 0.98919 0.96869 1.21438 1.01842 1.06540 0.93215 1.17886 0.91979 0.90827 0.93843 1.19852 0.95116 1.39727 0.98340 0.90266 1.26808 0.94228 0.92235 1.05349 1.69893 1.03183 1.36660 1.36588 0.85151 0.79912 0.78648 0.75954 1.17564 1.19683 1.18775 1.21463 0.98753 0.99276 0.95620 1.20812 0.92829 0.95532 0.83162 1.23073 1.01970 0.96048 1.02472 1.22274 0.99209 1.02254 0.96753 1.23043 0.98424 0.99256 1.04417 0.90479 0.93791 0.91784 0.94929 0.89949 0.87025 0.94078 0.77535 0.84441 0.87849 0.90670 0.88738 0.91360 0.89190 0.92380 0.91363 0.88482 0.90641 0.91959 0.87638 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.91 71.98 0.71 -2.08 16 2 C -0.14 -3.51 6.08 30.59 0.19 -3.32 16 3 C 0.12 3.42 4.70 86.38 0.41 3.83 16 4 N -0.62 -21.01 2.38 -778.10 -1.85 -22.86 16 5 C 0.58 26.62 6.02 86.80 0.52 27.14 16 6 O -0.58 -31.16 16.47 -3.85 -0.06 -31.22 16 7 C -0.16 -7.68 4.89 -20.13 -0.10 -7.78 16 8 C -0.22 -8.61 4.05 22.70 0.09 -8.52 16 9 C -0.12 -4.77 10.01 22.18 0.22 -4.54 16 10 C -0.21 -10.14 9.78 22.77 0.22 -9.91 16 11 C 0.06 3.19 5.59 -21.32 -0.12 3.07 16 12 C -0.50 -28.39 9.07 23.47 0.21 -28.18 16 13 H 0.08 4.27 7.89 -2.91 -0.02 4.25 16 14 C 0.03 1.45 5.21 85.25 0.44 1.89 16 15 N -0.84 -48.13 10.76 21.82 0.23 -47.90 16 16 Si 0.98 41.32 29.58 68.60 2.03 43.35 16 17 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 20 C -0.13 -7.54 8.23 23.01 0.19 -7.35 16 21 C 0.16 3.97 0.98 3.60 0.00 3.98 16 22 C -0.18 -4.44 7.50 71.98 0.54 -3.90 16 23 C -0.15 -2.34 7.22 71.98 0.52 -1.82 16 24 C -0.19 -4.91 7.29 71.98 0.52 -4.38 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.03 1.09 7.63 -2.39 -0.02 1.07 16 29 H 0.08 1.76 5.78 -2.39 -0.01 1.75 16 30 H 0.11 2.32 6.15 -2.39 -0.01 2.31 16 31 H 0.04 1.40 8.02 -2.38 -0.02 1.38 16 32 H 0.21 6.30 0.65 -69.09 -0.04 6.25 16 33 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 34 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 35 H 0.28 14.97 8.30 -92.71 -0.77 14.20 16 36 H 0.09 6.10 5.86 -2.91 -0.02 6.09 16 37 H 0.07 1.38 7.78 -2.39 -0.02 1.36 16 38 H 0.09 1.83 6.75 -2.39 -0.02 1.81 16 39 H 0.06 2.01 4.80 -2.39 -0.01 2.00 16 40 H 0.07 1.07 5.87 -2.39 -0.01 1.06 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 1.05 6.41 -2.39 -0.02 1.03 16 43 H 0.06 2.11 4.08 -2.39 -0.01 2.10 16 44 H 0.11 1.93 7.56 -2.39 -0.02 1.91 16 45 H 0.06 1.47 8.04 -2.38 -0.02 1.45 16 Total: -1.00 -73.12 337.28 5.88 -67.23 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.95 Total: 33.28 kcal Atomic # 6 Polarization: -46.46 SS G_CDS: 4.58 Total: -41.87 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -1.62 Total: -70.76 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.06 Total: -31.22 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -73.12 5.88 -67.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267921989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.255 kcal (2) G-P(sol) polarization free energy of solvation -73.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds