Wall clock time and date at job start Tue Mar 31 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 N 1.46507 * 109.47281 * 180.02562 * 3 2 1 5 5 C 1.46504 * 119.99479 * 280.80088 * 4 3 2 6 6 C 1.52997 * 109.47137 * 269.99491 * 5 4 3 7 7 C 1.53006 * 109.47051 * 175.00046 * 6 5 4 8 8 C 1.52995 * 109.47378 * 295.00521 * 6 5 4 9 9 C 1.34772 * 120.00339 * 100.80070 * 4 3 2 10 10 O 1.21589 * 120.00157 * 187.18557 * 9 4 3 11 11 C 1.47642 * 120.00115 * 7.17722 * 9 4 3 12 12 C 1.40007 * 119.89556 * 148.14117 * 11 9 4 13 13 C 1.36319 * 120.10922 * 180.25979 * 12 11 9 14 14 C 1.40888 * 119.88921 * 359.52163 * 13 12 11 15 15 C 1.41104 * 120.10461 * 180.23452 * 14 13 12 16 16 H 1.08007 * 119.99932 * 206.62304 * 15 14 13 17 17 C 1.40227 * 120.00159 * 26.61523 * 15 14 13 18 18 N 1.30642 * 119.99738 * 25.35351 * 17 15 14 19 19 Si 1.86800 * 120.00294 * 205.34723 * 17 15 14 20 20 H 1.48504 * 109.47113 * 94.99073 * 19 17 15 21 21 H 1.48497 * 109.47290 * 214.99232 * 19 17 15 22 22 H 1.48504 * 109.46941 * 334.99087 * 19 17 15 23 23 C 1.40886 * 119.79463 * 0.50259 * 14 13 12 24 24 C 1.36325 * 119.89064 * 359.72700 * 23 14 13 25 25 H 1.09004 * 109.46913 * 300.00049 * 1 2 3 26 26 H 1.08998 * 109.47333 * 59.99821 * 1 2 3 27 27 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47331 * 240.00245 * 2 1 3 29 29 H 1.09001 * 109.47502 * 119.99429 * 2 1 3 30 30 H 1.08995 * 109.47387 * 59.99915 * 3 2 1 31 31 H 1.09001 * 109.47069 * 299.99496 * 3 2 1 32 32 H 1.09002 * 109.46951 * 30.00317 * 5 4 3 33 33 H 1.09007 * 109.46889 * 149.99808 * 5 4 3 34 34 H 1.09009 * 109.46962 * 55.00648 * 6 5 4 35 35 H 1.08999 * 109.46685 * 60.00381 * 7 6 5 36 36 H 1.08997 * 109.46989 * 180.02562 * 7 6 5 37 37 H 1.09006 * 109.47059 * 300.00585 * 7 6 5 38 38 H 1.08992 * 109.47174 * 60.00119 * 8 6 5 39 39 H 1.09001 * 109.46840 * 180.02562 * 8 6 5 40 40 H 1.08998 * 109.46926 * 299.99589 * 8 6 5 41 41 H 1.08007 * 119.94941 * 359.97438 * 12 11 9 42 42 H 1.08002 * 120.05427 * 179.72944 * 13 12 11 43 43 H 0.97007 * 120.00118 * 179.97438 * 18 17 15 44 44 H 1.07998 * 120.05983 * 179.71270 * 23 14 13 45 45 H 1.08000 * 119.94853 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2379 1.2047 1.2454 6 6 4.4932 2.5387 1.9496 7 6 5.1472 2.2811 3.3086 8 6 5.4226 3.3989 1.0911 9 6 4.1784 1.6615 -1.1473 10 8 5.3871 1.5330 -1.1765 11 6 3.4484 2.0572 -2.3681 12 6 4.0619 2.8950 -3.3073 13 6 3.3900 3.2674 -4.4334 14 6 2.0798 2.7996 -4.6563 15 6 1.3820 3.1783 -5.8228 16 1 0.3023 3.2068 -5.8208 17 6 2.0902 3.5177 -6.9845 18 7 3.2898 3.0391 -7.1814 19 14 1.3186 4.6539 -8.2505 20 1 1.7616 6.0489 -7.9989 21 1 1.7415 4.2381 -9.6119 22 1 -0.1609 4.5782 -8.1470 23 6 1.4665 1.9573 -3.7081 24 6 2.1446 1.5941 -2.5826 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.6490 0.5574 1.8954 33 1 5.1903 0.7244 1.0206 34 1 3.5468 3.0599 2.0948 35 1 6.0935 1.7600 3.1634 36 1 5.3287 3.2314 3.8105 37 1 4.4850 1.6682 3.9202 38 1 4.9567 3.5825 0.1231 39 1 5.6048 4.3492 1.5931 40 1 6.3689 2.8779 0.9460 41 1 5.0675 3.2505 -3.1371 42 1 3.8625 3.9171 -5.1552 43 1 3.7796 3.2735 -7.9852 44 1 0.4606 1.6000 -3.8723 45 1 1.6752 0.9487 -1.8549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270249442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:06 Heat of formation + Delta-G solvation = -19.189943 kcal Electronic energy + Delta-G solvation = -23568.080655 eV Core-core repulsion = 20357.237129 eV Total energy + Delta-G solvation = -3210.843526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.85997 -37.33000 -36.15334 -35.26958 -33.73382 -32.15562 -30.17808 -29.64636 -27.00839 -26.92167 -26.07906 -24.84536 -21.83927 -21.39263 -21.15513 -19.94143 -18.69474 -17.68587 -16.46383 -16.01374 -15.45937 -15.02760 -14.96650 -14.46080 -14.08615 -13.65421 -13.39301 -13.37524 -12.83913 -12.70749 -12.54982 -12.30113 -12.18084 -12.06069 -11.74707 -11.67334 -11.46088 -11.36022 -11.31500 -11.17404 -11.02567 -10.83568 -10.74456 -10.66477 -10.50035 -10.38279 -9.94444 -9.40588 -9.26897 -8.84050 -8.15178 -7.64352 -7.52168 -7.04185 -4.54729 2.32702 2.92863 2.97615 3.00833 3.01335 3.55882 3.76690 3.80602 4.48340 4.93296 4.99709 5.05469 5.17413 5.20591 5.31707 5.49850 5.53228 5.58889 5.69174 5.74311 5.82044 5.86124 5.92382 5.99218 6.03599 6.06973 6.14515 6.17611 6.21415 6.22977 6.27870 6.43955 6.47328 6.63967 6.81165 6.85274 7.02593 7.08674 7.13582 7.46477 7.63041 7.78004 7.88668 8.06262 8.16058 8.43320 8.65505 8.78066 9.06331 9.90737 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.004182 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.625877 B = 6693.880156 C = 7563.550406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C 0.078 3.922 4 N -0.618 5.618 5 C 0.121 3.879 6 C -0.111 4.111 7 C -0.143 4.143 8 C -0.139 4.139 9 C 0.575 3.425 10 O -0.564 6.564 11 C -0.280 4.280 12 C -0.037 4.037 13 C -0.184 4.184 14 C 0.131 3.869 15 C -0.454 4.454 16 H 0.085 0.915 17 C 0.081 3.919 18 N -0.763 5.763 19 Si 0.906 3.094 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.259 1.259 23 C -0.235 4.235 24 C -0.079 4.079 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.287 0.713 44 H 0.096 0.904 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -1.256 12.488 12.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C -0.045 4.045 4 N -0.350 5.350 5 C -0.002 4.002 6 C -0.131 4.131 7 C -0.200 4.200 8 C -0.196 4.196 9 C 0.371 3.629 10 O -0.444 6.444 11 C -0.285 4.285 12 C -0.056 4.056 13 C -0.203 4.203 14 C 0.128 3.872 15 C -0.481 4.481 16 H 0.103 0.897 17 C -0.142 4.142 18 N -0.385 5.385 19 Si 0.730 3.270 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.182 1.182 23 C -0.255 4.255 24 C -0.097 4.097 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.142 0.858 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.289 -1.354 12.295 12.580 hybrid contribution -0.294 0.413 -0.620 0.801 sum -2.582 -0.940 11.675 11.994 Atomic orbital electron populations 1.21720 0.95197 1.01752 1.02192 1.21988 0.96126 0.97880 1.02439 1.22483 0.80321 0.96729 1.04937 1.47768 1.06165 1.73199 1.07851 1.21385 0.97694 0.95897 0.85216 1.21498 0.99300 0.97213 0.95054 1.21769 1.00652 1.01388 0.96234 1.21775 0.99705 0.98382 0.99785 1.18653 0.86632 0.74749 0.82880 1.90644 1.14893 1.53284 1.85603 1.18869 0.96870 1.14484 0.98252 1.20359 0.97065 0.95224 0.92981 1.20784 0.96978 1.05155 0.97365 1.17728 0.91475 0.86620 0.91416 1.19769 0.95095 1.38539 0.94716 0.89666 1.26058 0.94424 0.94255 0.99467 1.69791 1.11565 1.31438 1.25734 0.86324 0.80898 0.80879 0.78934 1.18969 1.20069 1.18217 1.20688 1.00728 1.05989 0.98070 1.21234 0.93302 0.98476 0.96705 0.92790 0.91960 0.92678 0.91092 0.92113 0.92084 0.85844 0.91591 0.90190 0.91503 0.92612 0.92742 0.92953 0.92280 0.93772 0.92420 0.88726 0.87354 0.90165 0.88550 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.85 37.15 0.37 -1.23 16 2 C -0.15 -1.83 5.27 -26.74 -0.14 -1.97 16 3 C 0.08 1.11 4.87 -4.04 -0.02 1.10 16 4 N -0.62 -10.32 2.38 -174.87 -0.42 -10.73 16 5 C 0.12 1.73 4.99 -4.04 -0.02 1.71 16 6 C -0.11 -1.44 3.13 -90.62 -0.28 -1.72 16 7 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 8 C -0.14 -2.11 8.08 37.16 0.30 -1.81 16 9 C 0.58 12.15 5.77 -12.42 -0.07 12.08 16 10 O -0.56 -13.34 15.12 5.29 0.08 -13.26 16 11 C -0.28 -6.38 5.58 -104.73 -0.58 -6.96 16 12 C -0.04 -0.90 9.53 -39.61 -0.38 -1.28 16 13 C -0.18 -4.68 8.66 -39.27 -0.34 -5.02 16 14 C 0.13 3.31 5.53 -106.81 -0.59 2.72 16 15 C -0.45 -11.31 8.98 -37.75 -0.34 -11.65 16 16 H 0.09 2.02 7.96 -52.48 -0.42 1.60 16 17 C 0.08 1.92 4.93 -17.31 -0.09 1.83 16 18 N -0.76 -18.91 11.59 55.56 0.64 -18.27 16 19 Si 0.91 17.46 29.63 -169.99 -5.04 12.43 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 21 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 22 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 23 C -0.24 -5.39 9.73 -39.27 -0.38 -5.77 16 24 C -0.08 -1.67 7.38 -39.61 -0.29 -1.96 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.02 7.13 -51.93 -0.37 0.65 16 29 H 0.06 0.70 7.72 -51.93 -0.40 0.30 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.12 2.01 3.87 -52.76 -0.20 1.80 16 32 H 0.07 0.78 7.65 -51.93 -0.40 0.38 16 33 H 0.08 1.27 7.34 -51.93 -0.38 0.89 16 34 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 1.07 6.19 -51.93 -0.32 0.75 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 41 H 0.09 2.26 7.94 -52.48 -0.42 1.84 16 42 H 0.11 2.82 6.59 -52.49 -0.35 2.47 16 43 H 0.29 6.41 8.29 -40.82 -0.34 6.07 16 44 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 45 H 0.12 2.18 2.61 -52.49 -0.14 2.04 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -27.84 354.04 -9.08 -36.92 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -7.16 Total: 8.62 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -2.52 Total: -21.05 kcal Atomic # 7 Polarization: -29.23 SS G_CDS: 0.23 Total: -29.00 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.08 Total: -13.26 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.04 Total: 12.43 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.84 -9.08 -36.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270249442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.731 kcal (2) G-P(sol) polarization free energy of solvation -27.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds