Wall clock time and date at job start Tue Mar 31 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 N 1.46507 * 109.47281 * 180.02562 * 3 2 1 5 5 C 1.46504 * 119.99479 * 280.80088 * 4 3 2 6 6 C 1.52997 * 109.47137 * 269.99491 * 5 4 3 7 7 C 1.53006 * 109.47051 * 175.00046 * 6 5 4 8 8 C 1.52995 * 109.47378 * 295.00521 * 6 5 4 9 9 C 1.34772 * 120.00339 * 100.80070 * 4 3 2 10 10 O 1.21589 * 120.00157 * 187.18557 * 9 4 3 11 11 C 1.47642 * 120.00115 * 7.17722 * 9 4 3 12 12 C 1.40007 * 119.89556 * 148.14117 * 11 9 4 13 13 C 1.36319 * 120.10922 * 180.25979 * 12 11 9 14 14 C 1.40888 * 119.88921 * 359.52163 * 13 12 11 15 15 C 1.41104 * 120.10461 * 180.23452 * 14 13 12 16 16 H 1.08007 * 119.99932 * 206.62304 * 15 14 13 17 17 C 1.40227 * 120.00159 * 26.61523 * 15 14 13 18 18 N 1.30642 * 119.99738 * 25.35351 * 17 15 14 19 19 Si 1.86800 * 120.00294 * 205.34723 * 17 15 14 20 20 H 1.48504 * 109.47113 * 94.99073 * 19 17 15 21 21 H 1.48497 * 109.47290 * 214.99232 * 19 17 15 22 22 H 1.48504 * 109.46941 * 334.99087 * 19 17 15 23 23 C 1.40886 * 119.79463 * 0.50259 * 14 13 12 24 24 C 1.36325 * 119.89064 * 359.72700 * 23 14 13 25 25 H 1.09004 * 109.46913 * 300.00049 * 1 2 3 26 26 H 1.08998 * 109.47333 * 59.99821 * 1 2 3 27 27 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47331 * 240.00245 * 2 1 3 29 29 H 1.09001 * 109.47502 * 119.99429 * 2 1 3 30 30 H 1.08995 * 109.47387 * 59.99915 * 3 2 1 31 31 H 1.09001 * 109.47069 * 299.99496 * 3 2 1 32 32 H 1.09002 * 109.46951 * 30.00317 * 5 4 3 33 33 H 1.09007 * 109.46889 * 149.99808 * 5 4 3 34 34 H 1.09009 * 109.46962 * 55.00648 * 6 5 4 35 35 H 1.08999 * 109.46685 * 60.00381 * 7 6 5 36 36 H 1.08997 * 109.46989 * 180.02562 * 7 6 5 37 37 H 1.09006 * 109.47059 * 300.00585 * 7 6 5 38 38 H 1.08992 * 109.47174 * 60.00119 * 8 6 5 39 39 H 1.09001 * 109.46840 * 180.02562 * 8 6 5 40 40 H 1.08998 * 109.46926 * 299.99589 * 8 6 5 41 41 H 1.08007 * 119.94941 * 359.97438 * 12 11 9 42 42 H 1.08002 * 120.05427 * 179.72944 * 13 12 11 43 43 H 0.97007 * 120.00118 * 179.97438 * 18 17 15 44 44 H 1.07998 * 120.05983 * 179.71270 * 23 14 13 45 45 H 1.08000 * 119.94853 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2379 1.2047 1.2454 6 6 4.4932 2.5387 1.9496 7 6 5.1472 2.2811 3.3086 8 6 5.4226 3.3989 1.0911 9 6 4.1784 1.6615 -1.1473 10 8 5.3871 1.5330 -1.1765 11 6 3.4484 2.0572 -2.3681 12 6 4.0619 2.8950 -3.3073 13 6 3.3900 3.2674 -4.4334 14 6 2.0798 2.7996 -4.6563 15 6 1.3820 3.1783 -5.8228 16 1 0.3023 3.2068 -5.8208 17 6 2.0902 3.5177 -6.9845 18 7 3.2898 3.0391 -7.1814 19 14 1.3186 4.6539 -8.2505 20 1 1.7616 6.0489 -7.9989 21 1 1.7415 4.2381 -9.6119 22 1 -0.1609 4.5782 -8.1470 23 6 1.4665 1.9573 -3.7081 24 6 2.1446 1.5941 -2.5826 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.6490 0.5574 1.8954 33 1 5.1903 0.7244 1.0206 34 1 3.5468 3.0599 2.0948 35 1 6.0935 1.7600 3.1634 36 1 5.3287 3.2314 3.8105 37 1 4.4850 1.6682 3.9202 38 1 4.9567 3.5825 0.1231 39 1 5.6048 4.3492 1.5931 40 1 6.3689 2.8779 0.9460 41 1 5.0675 3.2505 -3.1371 42 1 3.8625 3.9171 -5.1552 43 1 3.7796 3.2735 -7.9852 44 1 0.4606 1.6000 -3.8723 45 1 1.6752 0.9487 -1.8549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270249442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:06 Heat of formation + Delta-G solvation = -32.043227 kcal Electronic energy + Delta-G solvation = -23568.638015 eV Core-core repulsion = 20357.237129 eV Total energy + Delta-G solvation = -3211.400886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39438 -39.06174 -37.62077 -36.48507 -35.45483 -33.32511 -31.98534 -31.46027 -28.40826 -28.03647 -27.40024 -26.29050 -23.41703 -22.93122 -22.56996 -21.23552 -20.13036 -19.47838 -18.04887 -17.44049 -17.17911 -16.41467 -16.35569 -15.64514 -15.55500 -15.16223 -15.06206 -14.47155 -14.38801 -14.03479 -13.83480 -13.80072 -13.77110 -13.25103 -13.10789 -12.99872 -12.87046 -12.74098 -12.70297 -12.40301 -12.34435 -12.27033 -11.95359 -11.83743 -11.68528 -11.64633 -11.51974 -11.17844 -11.07572 -10.52516 -9.62206 -9.43748 -9.35115 -8.83293 -6.44582 0.53218 1.11310 1.36639 1.42771 1.52883 2.05483 2.15766 2.23828 2.70413 3.62514 3.81089 3.93861 4.00358 4.08665 4.17837 4.18828 4.36975 4.39162 4.50729 4.55008 4.66579 4.70523 4.77539 4.81754 4.84675 4.94522 4.96417 5.02583 5.05867 5.06836 5.14691 5.20387 5.22611 5.25302 5.28413 5.39446 5.44462 5.50656 5.59921 5.76589 5.81243 5.96824 6.01879 6.21194 6.54728 6.58621 6.77795 6.90631 7.44167 8.14971 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.004182 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.625877 B = 6693.880156 C = 7563.550406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.073 3.927 4 N -0.607 5.607 5 C 0.117 3.883 6 C -0.106 4.106 7 C -0.136 4.136 8 C -0.136 4.136 9 C 0.573 3.427 10 O -0.599 6.599 11 C -0.291 4.291 12 C -0.051 4.051 13 C -0.204 4.204 14 C 0.105 3.895 15 C -0.483 4.483 16 H 0.092 0.908 17 C 0.041 3.959 18 N -0.801 5.801 19 Si 0.983 3.017 20 H -0.263 1.263 21 H -0.267 1.267 22 H -0.249 1.249 23 C -0.246 4.246 24 C -0.064 4.064 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.021 0.979 39 H 0.060 0.940 40 H 0.040 0.960 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.295 0.705 44 H 0.115 0.885 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 -1.715 14.672 15.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C -0.049 4.049 4 N -0.338 5.338 5 C -0.005 4.005 6 C -0.125 4.125 7 C -0.194 4.194 8 C -0.194 4.194 9 C 0.367 3.633 10 O -0.482 6.482 11 C -0.296 4.296 12 C -0.070 4.070 13 C -0.223 4.223 14 C 0.102 3.898 15 C -0.510 4.510 16 H 0.110 0.890 17 C -0.179 4.179 18 N -0.424 5.424 19 Si 0.802 3.198 20 H -0.188 1.188 21 H -0.192 1.192 22 H -0.172 1.172 23 C -0.266 4.266 24 C -0.082 4.082 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.133 0.867 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.461 -1.828 14.522 15.301 hybrid contribution 0.409 0.514 -1.167 1.339 sum -4.052 -1.314 13.355 14.018 Atomic orbital electron populations 1.21713 0.93384 1.02764 1.02723 1.21939 0.97590 0.96082 1.02302 1.22626 0.78540 0.98302 1.05393 1.47766 1.07361 1.71272 1.07359 1.21636 0.97191 0.97272 0.84382 1.21480 0.99325 0.95861 0.95853 1.21716 1.00675 1.02386 0.94586 1.21737 0.99212 0.99744 0.98689 1.18442 0.86131 0.74942 0.83748 1.90619 1.16246 1.55073 1.86295 1.19188 0.97723 1.13819 0.98831 1.20430 0.96891 0.96146 0.93531 1.20694 0.97786 1.06194 0.97641 1.18073 0.91606 0.87471 0.92691 1.20070 0.95613 1.39980 0.95313 0.88954 1.26966 0.94665 0.94969 1.01279 1.69835 1.13084 1.32627 1.26869 0.85181 0.80203 0.78205 0.76180 1.18798 1.19179 1.17228 1.20957 1.01704 1.05736 0.98160 1.21598 0.92354 0.97710 0.96550 0.90882 0.92866 0.91488 0.93294 0.90223 0.88889 0.88041 0.87885 0.92235 0.90503 0.93012 0.91739 0.90696 0.95942 0.92060 0.94097 0.89607 0.89105 0.89380 0.86711 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.85 71.98 0.71 -1.87 16 2 C -0.14 -3.06 5.27 30.59 0.16 -2.90 16 3 C 0.07 1.89 4.87 86.38 0.42 2.31 16 4 N -0.61 -19.47 2.38 -825.42 -1.96 -21.44 16 5 C 0.12 3.07 4.99 86.38 0.43 3.50 16 6 C -0.11 -2.49 3.13 -10.79 -0.03 -2.52 16 7 C -0.14 -2.34 9.19 71.98 0.66 -1.68 16 8 C -0.14 -4.13 8.08 71.98 0.58 -3.55 16 9 C 0.57 24.64 5.77 86.73 0.50 25.14 16 10 O -0.60 -29.42 15.12 -4.00 -0.06 -29.48 16 11 C -0.29 -13.64 5.58 -19.93 -0.11 -13.75 16 12 C -0.05 -2.62 9.53 22.25 0.21 -2.41 16 13 C -0.20 -11.00 8.66 22.47 0.19 -10.81 16 14 C 0.10 5.49 5.53 -21.28 -0.12 5.38 16 15 C -0.48 -24.62 8.98 23.46 0.21 -24.41 16 16 H 0.09 4.41 7.96 -2.91 -0.02 4.39 16 17 C 0.04 1.97 4.93 85.35 0.42 2.39 16 18 N -0.80 -41.10 11.59 21.87 0.25 -40.85 16 19 Si 0.98 35.95 29.63 68.60 2.03 37.98 16 20 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 21 H -0.27 -9.33 7.11 99.48 0.71 -8.63 16 22 H -0.25 -8.66 7.11 99.48 0.71 -7.96 16 23 C -0.25 -11.40 9.73 22.47 0.22 -11.18 16 24 C -0.06 -2.72 7.38 22.25 0.16 -2.56 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 1.03 7.92 -2.39 -0.02 1.01 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 1.30 7.13 -2.39 -0.02 1.28 16 29 H 0.08 1.48 7.72 -2.39 -0.02 1.46 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.10 3.12 3.87 -3.16 -0.01 3.11 16 32 H 0.10 1.97 7.65 -2.39 -0.02 1.95 16 33 H 0.06 1.84 7.34 -2.38 -0.02 1.83 16 34 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.02 0.82 6.19 -2.39 -0.01 0.80 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.04 1.34 8.12 -2.39 -0.02 1.32 16 41 H 0.09 4.45 7.94 -2.91 -0.02 4.42 16 42 H 0.09 5.09 6.59 -2.91 -0.02 5.07 16 43 H 0.30 13.58 8.29 -92.70 -0.77 12.81 16 44 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 45 H 0.16 5.44 2.61 -2.91 -0.01 5.44 16 Total: -1.00 -64.26 354.04 5.85 -58.41 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.96 Total: 34.28 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 4.62 Total: -38.91 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -1.71 Total: -62.28 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.06 Total: -29.48 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 2.03 Total: 37.98 kcal Total: -64.26 5.85 -58.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270249442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.363 kcal (2) G-P(sol) polarization free energy of solvation -64.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds