Wall clock time and date at job start Tue Mar 31 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47515 * 2 1 4 4 H 1.08998 * 109.47185 * 305.00699 * 3 2 1 5 5 C 1.53001 * 109.46425 * 65.00381 * 3 2 1 6 6 C 1.52991 * 109.47384 * 185.00038 * 3 2 1 7 7 N 1.46500 * 109.47303 * 175.00380 * 6 3 2 8 8 C 1.46501 * 119.99978 * 270.00311 * 7 6 3 9 9 C 1.52998 * 109.47283 * 280.20155 * 8 7 6 10 10 C 1.34773 * 120.00183 * 90.00357 * 7 6 3 11 11 O 1.21591 * 119.99796 * 6.66008 * 10 7 6 12 12 C 1.47636 * 120.00235 * 186.66368 * 10 7 6 13 13 C 1.40013 * 119.89545 * 329.12365 * 12 10 7 14 14 C 1.36316 * 120.10757 * 179.71287 * 13 12 10 15 15 C 1.40896 * 119.88804 * 0.56220 * 14 13 12 16 16 C 1.41108 * 120.09760 * 179.69302 * 15 14 13 17 17 H 1.08005 * 119.99621 * 209.57883 * 16 15 14 18 18 C 1.40225 * 120.00675 * 29.57818 * 16 15 14 19 19 N 1.30650 * 119.99654 * 10.75458 * 18 16 15 20 20 Si 1.86798 * 120.00545 * 190.75404 * 18 16 15 21 21 H 1.48507 * 109.46774 * 59.99984 * 20 18 16 22 22 H 1.48498 * 109.47355 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47147 * 300.00340 * 20 18 16 24 24 C 1.40879 * 119.79623 * 359.71234 * 15 14 13 25 25 C 1.36321 * 119.89265 * 0.02562 * 24 15 14 26 26 H 1.08996 * 109.47240 * 59.99051 * 1 2 3 27 27 H 1.08997 * 109.47522 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46707 * 299.99187 * 1 2 3 29 29 H 1.09004 * 109.46441 * 240.00345 * 2 1 3 30 30 H 1.08996 * 109.47240 * 120.00949 * 2 1 3 31 31 H 1.09007 * 109.47001 * 180.02562 * 5 3 2 32 32 H 1.09004 * 109.47432 * 299.99805 * 5 3 2 33 33 H 1.09006 * 109.47474 * 60.00389 * 5 3 2 34 34 H 1.09004 * 109.47262 * 55.00528 * 6 3 2 35 35 H 1.09001 * 109.47411 * 295.00752 * 6 3 2 36 36 H 1.09004 * 109.47060 * 40.20138 * 8 7 6 37 37 H 1.09003 * 109.47207 * 160.19705 * 8 7 6 38 38 H 1.09000 * 109.46614 * 299.99855 * 9 8 7 39 39 H 1.08994 * 109.47602 * 59.99657 * 9 8 7 40 40 H 1.08997 * 109.47151 * 180.02562 * 9 8 7 41 41 H 1.07998 * 119.94777 * 0.02562 * 13 12 10 42 42 H 1.07998 * 120.05424 * 180.25220 * 14 13 12 43 43 H 0.97000 * 120.00458 * 179.97438 * 19 18 16 44 44 H 1.07997 * 120.05464 * 179.97438 * 24 15 14 45 45 H 1.07997 * 119.94964 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6354 2.1264 1.3075 6 6 3.5648 1.4443 -0.1257 7 7 4.0433 2.8237 -0.2457 8 6 4.1785 3.4397 -1.5680 9 6 5.4796 2.9675 -2.2200 10 6 4.3592 3.5260 0.8603 11 8 4.3637 2.9798 1.9467 12 6 4.6996 4.9586 0.7530 13 6 5.3174 5.4441 -0.4059 14 6 5.6283 6.7671 -0.5120 15 6 5.3378 7.6441 0.5518 16 6 5.6636 9.0132 0.4493 17 1 5.9006 9.5799 1.3377 18 6 5.6798 9.6382 -0.8059 19 7 5.1944 9.0201 -1.8496 20 14 6.3952 11.3543 -0.9859 21 1 7.8217 11.3417 -0.5730 22 1 6.2932 11.7871 -2.4027 23 1 5.6390 12.2986 -0.1247 24 6 4.7214 7.1499 1.7182 25 6 4.4093 5.8262 1.8129 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5140 0.8899 31 1 1.9983 3.1542 1.3074 32 1 0.5490 2.1251 1.3971 33 1 2.0700 1.5873 2.1493 34 1 3.8571 0.8800 -1.0114 35 1 4.0030 0.9834 0.7596 36 1 3.3332 3.1497 -2.1921 37 1 4.1974 4.5245 -1.4633 38 1 6.3248 3.2576 -1.5959 39 1 5.4608 1.8828 -2.3248 40 1 5.5804 3.4262 -3.2036 41 1 5.5433 4.7704 -1.2191 42 1 6.1011 7.1415 -1.4079 43 1 5.2052 9.4524 -2.7179 44 1 4.4972 7.8183 2.5362 45 1 3.9372 5.4462 2.7068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270365915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:24 Heat of formation + Delta-G solvation = -27.695274 kcal Electronic energy + Delta-G solvation = -23481.577729 eV Core-core repulsion = 20270.365384 eV Total energy + Delta-G solvation = -3211.212345 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36997 -39.10368 -37.72139 -36.55920 -35.51011 -32.56283 -31.64603 -31.09913 -30.25639 -28.38170 -27.10273 -24.57193 -24.38741 -22.88647 -22.84919 -20.97547 -20.09316 -19.34557 -18.00922 -17.61043 -16.94508 -16.55800 -16.16952 -15.90263 -15.42774 -15.15328 -14.82201 -14.72590 -14.43037 -14.20249 -13.94739 -13.65183 -13.42011 -13.28555 -13.19706 -12.89462 -12.85948 -12.77725 -12.72842 -12.59781 -12.38446 -12.09612 -11.93359 -11.86391 -11.72966 -11.54996 -11.40550 -11.18542 -11.06935 -10.51914 -9.57583 -9.44516 -9.28604 -8.69530 -6.46607 0.52288 1.12270 1.40243 1.45384 1.51773 2.07483 2.18977 2.25083 2.77890 3.64536 3.81206 3.91040 4.00449 4.05421 4.14527 4.36079 4.38688 4.41302 4.46132 4.56713 4.63442 4.68038 4.76706 4.80083 4.87463 4.90863 4.94934 5.03455 5.05779 5.07120 5.16682 5.18042 5.21852 5.23589 5.30343 5.37952 5.49124 5.51538 5.62099 5.74716 5.85622 5.98493 6.01758 6.25894 6.57095 6.57812 6.81873 6.91438 7.43521 8.25006 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.003735 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.026573 B = 7493.855600 C = 7815.001419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.100 4.100 4 H 0.072 0.928 5 C -0.134 4.134 6 C 0.118 3.882 7 N -0.607 5.607 8 C 0.068 3.932 9 C -0.168 4.168 10 C 0.574 3.426 11 O -0.595 6.595 12 C -0.282 4.282 13 C -0.085 4.085 14 C -0.189 4.189 15 C 0.101 3.899 16 C -0.484 4.484 17 H 0.080 0.920 18 C 0.037 3.963 19 N -0.808 5.808 20 Si 0.987 3.013 21 H -0.260 1.260 22 H -0.263 1.263 23 H -0.262 1.262 24 C -0.248 4.248 25 C -0.042 4.042 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.021 0.979 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.156 0.844 42 H 0.115 0.885 43 H 0.294 0.706 44 H 0.101 0.899 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 -11.338 -6.016 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.120 4.120 4 H 0.091 0.909 5 C -0.191 4.191 6 C -0.004 4.004 7 N -0.337 5.337 8 C -0.053 4.053 9 C -0.226 4.226 10 C 0.368 3.632 11 O -0.479 6.479 12 C -0.287 4.287 13 C -0.103 4.103 14 C -0.208 4.208 15 C 0.098 3.902 16 C -0.513 4.513 17 H 0.098 0.902 18 C -0.180 4.180 19 N -0.433 5.433 20 Si 0.807 3.193 21 H -0.184 1.184 22 H -0.187 1.187 23 H -0.186 1.186 24 C -0.268 4.268 25 C -0.061 4.061 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.173 0.827 42 H 0.133 0.867 43 H 0.105 0.895 44 H 0.119 0.881 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.359 -11.620 -5.743 13.675 hybrid contribution 0.200 1.061 0.345 1.134 sum -4.159 -10.559 -5.398 12.567 Atomic orbital electron populations 1.21794 0.95208 1.02110 1.01740 1.21461 0.96476 0.94224 1.02634 1.21522 0.95089 0.97641 0.97740 0.90926 1.21748 1.00572 0.99152 0.97672 1.21616 0.93938 0.81882 1.02990 1.47784 1.65582 1.14171 1.06206 1.22513 0.99312 1.00797 0.82706 1.22199 0.96410 1.02738 1.01281 1.18411 0.74903 0.86486 0.83428 1.90615 1.56483 1.71995 1.28772 1.19276 1.17968 0.92762 0.98652 1.21743 0.96279 0.96259 0.96054 1.21078 1.06353 0.92554 1.00849 1.18134 0.86677 0.93975 0.91413 1.19998 1.41460 0.95104 0.94700 0.90210 1.26818 0.92468 1.04418 0.94287 1.69723 1.31757 1.40231 1.01573 0.85175 0.79528 0.75966 0.78648 1.18434 1.18719 1.18619 1.20880 1.09665 0.95249 1.00983 1.20437 0.96553 0.93171 0.95916 0.92526 0.91577 0.93330 0.90196 0.92213 0.96019 0.91990 0.93911 0.88043 0.91914 0.89087 0.88413 0.93624 0.90634 0.89472 0.82703 0.86739 0.89456 0.88066 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.67 71.98 0.70 -1.78 16 2 C -0.11 -1.98 5.40 30.59 0.17 -1.81 16 3 C -0.10 -2.41 2.59 -10.80 -0.03 -2.44 16 4 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 5 C -0.13 -4.04 7.82 71.98 0.56 -3.47 16 6 C 0.12 3.11 5.00 86.38 0.43 3.54 16 7 N -0.61 -19.79 2.37 -825.45 -1.96 -21.75 16 8 C 0.07 1.91 5.58 86.38 0.48 2.39 16 9 C -0.17 -3.88 9.16 71.98 0.66 -3.22 16 10 C 0.57 24.32 5.80 86.73 0.50 24.83 16 11 O -0.60 -28.20 15.05 -4.00 -0.06 -28.26 16 12 C -0.28 -13.09 5.59 -19.93 -0.11 -13.20 16 13 C -0.09 -3.79 7.39 22.25 0.16 -3.62 16 14 C -0.19 -9.41 8.59 22.47 0.19 -9.22 16 15 C 0.10 5.33 5.54 -21.28 -0.12 5.22 16 16 C -0.48 -25.01 9.05 23.46 0.21 -24.80 16 17 H 0.08 3.98 7.87 -2.91 -0.02 3.95 16 18 C 0.04 1.76 5.25 85.35 0.45 2.21 16 19 N -0.81 -38.84 10.88 21.87 0.24 -38.60 16 20 Si 0.99 35.64 29.57 68.60 2.03 37.67 16 21 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 22 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 23 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 24 C -0.25 -12.60 9.73 22.47 0.22 -12.38 16 25 C -0.04 -2.04 9.52 22.25 0.21 -1.83 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.87 6.57 -2.39 -0.02 0.86 16 29 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.02 0.79 6.19 -2.38 -0.01 0.77 16 32 H 0.06 1.62 6.57 -2.39 -0.02 1.60 16 33 H 0.04 1.38 8.12 -2.38 -0.02 1.36 16 34 H 0.10 1.99 7.71 -2.38 -0.02 1.98 16 35 H 0.06 1.91 7.34 -2.39 -0.02 1.89 16 36 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.10 3.34 3.91 -3.11 -0.01 3.32 16 38 H 0.04 1.24 7.11 -2.39 -0.02 1.22 16 39 H 0.07 1.44 7.77 -2.39 -0.02 1.42 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.16 5.74 2.74 -2.91 -0.01 5.74 16 42 H 0.11 5.77 6.27 -2.91 -0.02 5.75 16 43 H 0.29 12.63 8.29 -92.71 -0.77 11.86 16 44 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 45 H 0.10 4.63 7.92 -2.91 -0.02 4.60 16 Total: -1.00 -61.22 350.31 5.91 -55.31 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.97 Total: 35.21 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: 4.69 Total: -39.59 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -1.72 Total: -60.35 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.06 Total: -28.26 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.67 kcal Total: -61.22 5.91 -55.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270365915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.613 kcal (2) G-P(sol) polarization free energy of solvation -61.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds