Wall clock time and date at job start Tue Mar 31 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47433 * 2 1 4 4 N 1.46496 * 109.47301 * 179.97438 * 3 2 1 5 5 C 1.34785 * 119.99730 * 89.99917 * 4 3 2 6 6 O 1.21581 * 119.99911 * 351.11270 * 5 4 3 7 7 C 1.47643 * 119.99842 * 171.11006 * 5 4 3 8 8 C 1.40008 * 119.89510 * 262.67860 * 7 5 4 9 9 C 1.36315 * 120.10720 * 180.25904 * 8 7 5 10 10 C 1.40889 * 119.89062 * 359.47188 * 9 8 7 11 11 C 1.41109 * 120.10566 * 180.30241 * 10 9 8 12 12 H 1.07997 * 120.00363 * 156.88551 * 11 10 9 13 13 C 1.40224 * 119.99564 * 336.87923 * 11 10 9 14 14 N 1.30640 * 120.00515 * 330.77081 * 13 11 10 15 15 Si 1.86807 * 119.99681 * 150.76884 * 13 11 10 16 16 H 1.48504 * 109.46949 * 90.00249 * 15 13 11 17 17 H 1.48504 * 109.46973 * 209.99872 * 15 13 11 18 18 H 1.48500 * 109.47222 * 330.00198 * 15 13 11 19 19 C 1.40891 * 119.79118 * 0.27721 * 10 9 8 20 20 C 1.36313 * 119.89181 * 0.02562 * 19 10 9 21 21 C 1.46490 * 120.00391 * 269.99685 * 4 3 2 22 22 C 1.53000 * 109.47024 * 354.19841 * 21 4 3 23 23 C 1.53006 * 109.47160 * 114.19439 * 21 4 3 24 24 C 1.53000 * 109.47728 * 234.19345 * 21 4 3 25 25 H 1.09003 * 109.47461 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47373 * 300.00474 * 1 2 3 27 27 H 1.09001 * 109.47143 * 59.99956 * 1 2 3 28 28 H 1.08999 * 109.47373 * 239.99526 * 2 1 3 29 29 H 1.09000 * 109.46839 * 119.99590 * 2 1 3 30 30 H 1.08999 * 109.47228 * 59.99437 * 3 2 1 31 31 H 1.09001 * 109.46992 * 300.00137 * 3 2 1 32 32 H 1.08002 * 119.94823 * 0.02736 * 8 7 5 33 33 H 1.08004 * 120.05617 * 179.74903 * 9 8 7 34 34 H 0.97007 * 120.00306 * 180.02562 * 14 13 11 35 35 H 1.08003 * 120.05301 * 180.02562 * 19 10 9 36 36 H 1.08004 * 119.94549 * 180.02562 * 20 19 10 37 37 H 1.08996 * 109.47302 * 347.02303 * 22 21 4 38 38 H 1.09001 * 109.47567 * 107.02713 * 22 21 4 39 39 H 1.09003 * 109.47006 * 227.02935 * 22 21 4 40 40 H 1.08992 * 109.46948 * 60.00355 * 23 21 4 41 41 H 1.08997 * 109.47119 * 180.02562 * 23 21 4 42 42 H 1.09000 * 109.46559 * 300.00299 * 23 21 4 43 43 H 1.09000 * 109.47511 * 178.26476 * 24 21 4 44 44 H 1.08994 * 109.47290 * 298.27083 * 24 21 4 45 45 H 1.09000 * 109.46491 * 58.26716 * 24 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1794 1.4422 -1.1664 6 8 3.5828 1.2794 -2.2132 7 6 5.6425 1.6398 -1.1735 8 6 6.1738 2.9106 -1.4244 9 6 7.5241 3.0968 -1.4372 10 6 8.3852 2.0102 -1.1865 11 6 9.7835 2.1992 -1.1923 12 1 10.4234 1.5138 -0.6565 13 6 10.3423 3.2769 -1.8941 14 7 9.7409 3.7491 -2.9534 15 14 11.9470 4.0376 -1.3143 16 1 13.0873 3.3442 -1.9657 17 1 11.9713 5.4777 -1.6762 18 1 12.0580 3.8956 0.1597 19 6 7.8456 0.7344 -0.9293 20 6 6.4941 0.5567 -0.9247 21 6 4.2370 1.4427 1.2695 22 6 3.2487 1.5887 2.4283 23 6 5.0039 0.1268 1.4162 24 6 5.2229 2.6125 1.2895 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 5.5129 3.7440 -1.6117 33 1 7.9332 4.0767 -1.6348 34 1 10.1277 4.4944 -3.4390 35 1 8.5017 -0.1015 -0.7362 36 1 6.0795 -0.4209 -0.7273 37 1 2.2748 1.8866 2.0400 38 1 3.1561 0.6358 2.9493 39 1 3.6111 2.3480 3.1214 40 1 5.7079 0.0228 0.5907 41 1 5.5482 0.1268 2.3605 42 1 4.3015 -0.7065 1.4020 43 1 5.7456 2.6309 2.2458 44 1 5.9458 2.4922 0.4826 45 1 4.6797 3.5477 1.1542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270505542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:12 Heat of formation + Delta-G solvation = -8.071400 kcal Electronic energy + Delta-G solvation = -24152.112246 eV Core-core repulsion = 20941.750856 eV Total energy + Delta-G solvation = -3210.361390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75841 -39.17347 -38.13978 -35.95574 -35.07126 -32.48340 -32.06248 -31.73113 -29.03201 -28.10681 -27.34602 -26.39911 -23.71148 -22.88729 -22.42726 -22.13174 -19.58730 -19.34248 -17.97740 -17.44652 -17.13391 -16.20673 -16.12400 -15.92189 -15.32189 -15.25222 -14.77727 -14.60957 -14.34152 -14.17347 -14.00632 -13.92200 -13.55219 -13.34743 -13.25063 -13.04769 -12.89347 -12.82577 -12.45065 -12.40355 -12.30667 -12.20499 -12.05399 -11.90150 -11.78827 -11.50020 -11.37924 -11.11334 -10.77867 -10.63716 -9.55755 -9.38861 -9.23847 -8.80017 -6.35175 0.77762 1.11788 1.38814 1.45926 1.56384 1.71283 2.15762 2.18005 2.60003 3.63500 3.76654 3.91122 4.02944 4.06743 4.18057 4.26841 4.33003 4.35892 4.38176 4.50191 4.71008 4.81608 4.84734 4.89464 4.94027 4.94582 4.99554 5.06449 5.08046 5.14779 5.17630 5.20072 5.24800 5.27903 5.30968 5.44131 5.53182 5.61389 5.62859 5.79677 5.90864 6.01074 6.03896 6.25298 6.52585 6.58192 6.84294 6.94602 7.31800 8.16933 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030025 B = 0.004201 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.335838 B = 6663.048337 C = 6961.418030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.096 3.904 4 N -0.596 5.596 5 C 0.581 3.419 6 O -0.595 6.595 7 C -0.260 4.260 8 C -0.055 4.055 9 C -0.196 4.196 10 C 0.103 3.897 11 C -0.490 4.490 12 H 0.086 0.914 13 C 0.048 3.952 14 N -0.797 5.797 15 Si 0.975 3.025 16 H -0.260 1.260 17 H -0.267 1.267 18 H -0.254 1.254 19 C -0.244 4.244 20 C -0.045 4.045 21 C 0.171 3.829 22 C -0.167 4.167 23 C -0.196 4.196 24 C -0.194 4.194 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.295 0.705 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 -2.130 11.578 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.025 4.025 4 N -0.328 5.328 5 C 0.372 3.628 6 O -0.477 6.477 7 C -0.264 4.264 8 C -0.074 4.074 9 C -0.215 4.215 10 C 0.100 3.900 11 C -0.517 4.517 12 H 0.104 0.896 13 C -0.173 4.173 14 N -0.420 5.420 15 Si 0.795 3.205 16 H -0.184 1.184 17 H -0.191 1.191 18 H -0.178 1.178 19 C -0.264 4.264 20 C -0.063 4.063 21 C 0.087 3.913 22 C -0.224 4.224 23 C -0.253 4.253 24 C -0.251 4.251 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.167 -2.044 10.860 15.017 hybrid contribution 0.839 0.434 -0.418 1.033 sum -9.329 -1.610 10.442 14.095 Atomic orbital electron populations 1.21662 0.93408 1.02493 1.02441 1.21809 0.97436 0.96349 1.01432 1.21926 0.79102 0.98117 1.03395 1.48276 1.06572 1.72265 1.05680 1.18633 0.87776 0.73597 0.82834 1.90643 1.71502 1.51681 1.33825 1.18763 0.90999 0.95604 1.21016 1.20168 0.94772 0.94655 0.97789 1.20633 0.92176 0.98500 1.10237 1.17892 0.93802 0.91025 0.87260 1.19940 0.92722 1.10848 1.28204 0.89555 1.26870 1.02894 0.95355 0.92162 1.69848 1.40438 1.20326 1.11398 0.85314 0.76852 0.77939 0.80384 1.18446 1.19093 1.17772 1.20719 0.94285 0.96449 1.14905 1.20214 0.92977 0.96391 0.96721 1.20440 0.92337 0.95663 0.82835 1.22575 0.99534 1.03829 0.96436 1.23083 1.01444 0.96180 1.04547 1.22968 1.00725 0.96906 1.04506 0.91827 0.90668 0.93245 0.94791 0.90881 0.86261 0.92490 0.89028 0.88758 0.89399 0.87564 0.86407 0.89389 0.90425 0.90555 0.90196 0.90547 0.92210 0.91327 0.89391 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 71.98 0.71 -1.78 16 2 C -0.13 -3.11 6.26 30.59 0.19 -2.92 16 3 C 0.10 2.52 4.78 86.38 0.41 2.94 16 4 N -0.60 -19.34 2.42 -778.40 -1.89 -21.23 16 5 C 0.58 24.66 6.62 86.73 0.57 25.23 16 6 O -0.60 -29.36 16.79 -3.97 -0.07 -29.43 16 7 C -0.26 -11.62 2.91 -19.94 -0.06 -11.68 16 8 C -0.05 -2.59 7.59 22.25 0.17 -2.42 16 9 C -0.20 -9.99 8.57 22.47 0.19 -9.80 16 10 C 0.10 5.29 5.56 -21.28 -0.12 5.17 16 11 C -0.49 -24.87 8.97 23.46 0.21 -24.66 16 12 H 0.09 4.18 7.99 -2.91 -0.02 4.15 16 13 C 0.05 2.26 4.85 85.35 0.41 2.68 16 14 N -0.80 -40.08 11.61 21.87 0.25 -39.82 16 15 Si 0.98 35.59 29.65 68.60 2.03 37.62 16 16 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 17 H -0.27 -9.32 7.11 99.48 0.71 -8.62 16 18 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 19 C -0.24 -11.43 9.73 22.47 0.22 -11.21 16 20 C -0.04 -1.94 6.69 22.25 0.15 -1.80 16 21 C 0.17 4.73 1.03 3.61 0.00 4.73 16 22 C -0.17 -3.19 9.25 71.98 0.67 -2.53 16 23 C -0.20 -5.42 8.16 71.98 0.59 -4.83 16 24 C -0.19 -6.15 7.55 71.98 0.54 -5.61 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.12 2.32 4.97 -2.39 -0.01 2.30 16 31 H 0.06 1.74 7.56 -2.39 -0.02 1.72 16 32 H 0.09 4.16 8.06 -2.91 -0.02 4.13 16 33 H 0.09 4.98 6.48 -2.91 -0.02 4.96 16 34 H 0.29 13.28 8.29 -92.70 -0.77 12.51 16 35 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 36 H 0.12 4.60 6.57 -2.91 -0.02 4.58 16 37 H 0.09 1.49 4.34 -2.39 -0.01 1.48 16 38 H 0.08 1.26 7.64 -2.39 -0.02 1.24 16 39 H 0.08 1.32 7.64 -2.39 -0.02 1.30 16 40 H 0.08 2.66 2.15 -3.52 -0.01 2.65 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 44 H 0.09 3.43 2.67 -2.39 -0.01 3.42 16 45 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -61.82 345.94 6.18 -55.63 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: 0.98 Total: 35.71 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 4.87 Total: -38.48 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -1.63 Total: -61.05 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.07 Total: -29.43 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Total: -61.82 6.18 -55.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270505542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.560 kcal (2) G-P(sol) polarization free energy of solvation -61.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds