Wall clock time and date at job start Tue Mar 31 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46886 * 2 1 4 4 N 1.46497 * 109.46894 * 180.02562 * 3 2 1 5 5 C 1.37100 * 119.99939 * 263.05337 * 4 3 2 6 6 H 1.07994 * 120.00003 * 142.22063 * 5 4 3 7 7 C 1.38956 * 119.99982 * 322.21351 * 5 4 3 8 8 N 1.31412 * 119.99677 * 157.07477 * 7 5 4 9 9 Si 1.86802 * 119.99999 * 337.07143 * 7 5 4 10 10 H 1.48499 * 109.46815 * 95.20669 * 9 7 5 11 11 H 1.48497 * 109.46811 * 215.20121 * 9 7 5 12 12 H 1.48493 * 109.47154 * 335.20550 * 9 7 5 13 13 C 1.34773 * 120.00031 * 83.06021 * 4 3 2 14 14 O 1.21294 * 119.99996 * 180.02562 * 13 4 3 15 15 C 1.50705 * 120.00105 * 359.97438 * 13 4 3 16 16 C 1.50694 * 109.47298 * 180.02562 * 15 13 4 17 17 C 1.38234 * 120.00243 * 269.72897 * 16 15 13 18 18 C 1.50703 * 119.99728 * 359.97438 * 17 16 15 19 19 C 1.38231 * 120.00121 * 179.78733 * 17 16 15 20 20 C 1.38230 * 120.00137 * 0.43938 * 19 17 16 21 21 C 1.50701 * 120.00273 * 179.83021 * 20 19 17 22 22 C 1.38239 * 119.99953 * 359.81578 * 20 19 17 23 23 C 1.38236 * 119.99888 * 359.97438 * 22 20 19 24 24 C 1.50698 * 120.00016 * 180.02562 * 23 22 20 25 25 H 1.09003 * 109.47096 * 299.99488 * 1 2 3 26 26 H 1.08994 * 109.47449 * 59.99674 * 1 2 3 27 27 H 1.08999 * 109.46705 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47096 * 240.00511 * 2 1 3 29 29 H 1.09000 * 109.47075 * 119.99756 * 2 1 3 30 30 H 1.09003 * 109.46835 * 60.00352 * 3 2 1 31 31 H 1.08994 * 109.47342 * 300.00391 * 3 2 1 32 32 H 0.97000 * 119.99650 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46901 * 300.00717 * 15 13 4 34 34 H 1.09003 * 109.46527 * 60.00428 * 15 13 4 35 35 H 1.09000 * 109.47235 * 89.99535 * 18 17 16 36 36 H 1.09007 * 109.47232 * 210.00062 * 18 17 16 37 37 H 1.09000 * 109.47038 * 329.99696 * 18 17 16 38 38 H 1.08002 * 119.99994 * 180.27725 * 19 17 16 39 39 H 1.08999 * 109.47580 * 269.98281 * 21 20 19 40 40 H 1.09001 * 109.47005 * 29.98357 * 21 20 19 41 41 H 1.09005 * 109.46873 * 149.97824 * 21 20 19 42 42 H 1.08002 * 120.00012 * 179.97438 * 22 20 19 43 43 H 1.09002 * 109.46793 * 269.97686 * 24 23 22 44 44 H 1.09004 * 109.47289 * 29.96976 * 24 23 22 45 45 H 1.08999 * 109.47216 * 149.97741 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.5860 1.1777 6 1 5.1012 1.0291 1.3439 7 6 3.7151 2.4480 2.1582 8 7 4.0678 2.2754 3.4123 9 14 2.5742 3.8523 1.6935 10 1 1.1641 3.4293 1.8878 11 1 2.8611 5.0283 2.5536 12 1 2.7905 4.2154 0.2700 13 6 4.1783 1.3017 -1.1595 14 8 5.3913 1.3012 -1.1600 15 6 3.4243 1.1436 -2.4548 16 6 4.4031 1.0049 -3.5922 17 6 4.8476 2.1291 -4.2625 18 6 4.3530 3.4934 -3.8562 19 6 5.7488 2.0022 -5.3029 20 6 6.1985 0.7503 -5.6790 21 6 7.1781 0.6116 -6.8158 22 6 5.7499 -0.3744 -5.0121 23 6 4.8520 -0.2471 -3.9688 24 6 4.3634 -1.4731 -3.2414 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.7353 2.8770 4.0967 33 1 2.7979 0.2530 -2.4041 34 1 2.7973 2.0199 -2.6194 35 1 5.0148 3.9083 -3.0960 36 1 4.3423 4.1500 -4.7263 37 1 3.3441 3.4088 -3.4526 38 1 6.0996 2.8809 -5.8238 39 1 6.6334 0.4965 -7.7529 40 1 7.8042 1.5024 -6.8666 41 1 7.8053 -0.2643 -6.6501 42 1 6.1009 -1.3525 -5.3062 43 1 3.4640 -1.8501 -3.7283 44 1 5.1370 -2.2408 -3.2628 45 1 4.1357 -1.2154 -2.2071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271346494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:57 Heat of formation + Delta-G solvation = -23.510950 kcal Electronic energy + Delta-G solvation = -23945.218749 eV Core-core repulsion = 20734.187850 eV Total energy + Delta-G solvation = -3211.030899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.93570 -38.45399 -35.49294 -33.99934 -33.31390 -32.81891 -31.52165 -29.56922 -27.72112 -26.47146 -26.06347 -25.52746 -23.78600 -21.41489 -20.50417 -20.10907 -18.61386 -16.97406 -16.27597 -16.10771 -15.54115 -15.25234 -14.37146 -14.10269 -14.04550 -13.92926 -13.40113 -13.19242 -13.01440 -12.95289 -12.80249 -12.65655 -12.48440 -12.37634 -12.31887 -12.20206 -11.81820 -11.70569 -11.49033 -11.17637 -11.03490 -10.93814 -10.80613 -10.58990 -10.52559 -10.47583 -10.00915 -9.82475 -9.03723 -8.54033 -8.22778 -7.99125 -7.70400 -6.37660 -3.92858 1.65489 1.69915 3.03349 3.22173 3.26687 3.78051 3.93045 4.16837 4.51234 4.95935 4.96974 5.00630 5.08766 5.25407 5.30877 5.35331 5.47411 5.50208 5.56905 5.59480 5.61775 5.70641 5.76208 5.76642 5.80638 5.82794 5.92956 5.93915 5.96270 6.05137 6.11573 6.14418 6.21749 6.22725 6.29500 6.48464 6.53579 6.57853 6.76472 6.81794 6.82458 7.04375 7.35302 7.58846 8.32766 8.56062 9.01613 9.35899 9.83736 10.74776 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019075 B = 0.005163 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.512739 B = 5421.700001 C = 5890.789734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.092 3.908 4 N -0.469 5.469 5 C -0.312 4.312 6 H 0.103 0.897 7 C 0.062 3.938 8 N -0.864 5.864 9 Si 0.870 3.130 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.264 1.264 13 C 0.472 3.528 14 O -0.553 6.553 15 C -0.110 4.110 16 C -0.053 4.053 17 C -0.066 4.066 18 C -0.117 4.117 19 C -0.127 4.127 20 C -0.091 4.091 21 C -0.109 4.109 22 C -0.128 4.128 23 C -0.066 4.066 24 C -0.116 4.116 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.273 0.727 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 -2.954 -15.989 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.032 4.032 4 N -0.192 5.192 5 C -0.439 4.439 6 H 0.121 0.879 7 C -0.144 4.144 8 N -0.501 5.501 9 Si 0.697 3.303 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.188 1.188 13 C 0.260 3.740 14 O -0.434 6.434 15 C -0.150 4.150 16 C -0.053 4.053 17 C -0.066 4.066 18 C -0.174 4.174 19 C -0.145 4.145 20 C -0.092 4.092 21 C -0.165 4.165 22 C -0.146 4.146 23 C -0.066 4.066 24 C -0.172 4.172 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.134 0.866 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.251 -2.885 -15.759 16.575 hybrid contribution -0.672 0.863 0.074 1.096 sum -4.922 -2.022 -15.685 16.563 Atomic orbital electron populations 1.21731 0.96104 1.01309 1.01570 1.21933 0.95029 0.97923 1.02801 1.21872 0.83297 0.96592 1.01480 1.43763 1.03566 1.65544 1.06285 1.19005 1.10381 1.24949 0.89596 0.87914 1.25337 0.97193 0.97126 0.94736 1.69773 1.44180 1.36432 0.99685 0.87061 0.80270 0.83269 0.79704 1.20196 1.21382 1.18831 1.20065 0.88129 0.81911 0.83883 1.90583 1.13750 1.52803 1.86226 1.20882 0.97718 1.03556 0.92810 1.19084 0.98300 0.92315 0.95621 1.19638 0.96687 0.94956 0.95296 1.20851 1.01627 0.93391 1.01494 1.20723 0.98905 0.96595 0.98310 1.19738 0.98408 0.93260 0.97745 1.20724 0.97419 1.02322 0.96072 1.20736 0.99101 0.97785 0.96951 1.19633 0.96712 0.94503 0.95709 1.20817 1.00823 0.95068 1.00533 0.92716 0.93056 0.92844 0.92293 0.90688 0.90635 0.92457 0.91701 0.89140 0.89241 0.90679 0.92012 0.91534 0.86639 0.91682 0.91878 0.91869 0.86632 0.91543 0.91735 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.60 16 2 C -0.14 -2.29 6.13 -26.73 -0.16 -2.45 16 3 C 0.09 1.80 3.74 -4.04 -0.02 1.79 16 4 N -0.47 -11.25 2.18 -114.81 -0.25 -11.50 16 5 C -0.31 -8.83 9.35 -14.93 -0.14 -8.97 16 6 H 0.10 3.29 7.92 -52.49 -0.42 2.88 16 7 C 0.06 1.70 5.24 -17.47 -0.09 1.61 16 8 N -0.86 -25.04 13.96 55.50 0.77 -24.26 16 9 Si 0.87 20.50 25.12 -169.99 -4.27 16.23 16 10 H -0.27 -6.00 6.67 56.52 0.38 -5.62 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.47 10.96 7.16 -10.98 -0.08 10.88 16 14 O -0.55 -15.16 15.91 5.55 0.09 -15.07 16 15 C -0.11 -1.95 3.36 -29.04 -0.10 -2.05 16 16 C -0.05 -0.93 4.37 -104.63 -0.46 -1.39 16 17 C -0.07 -1.10 5.88 -104.62 -0.62 -1.71 16 18 C -0.12 -1.77 9.60 36.01 0.35 -1.42 16 19 C -0.13 -1.91 9.36 -39.59 -0.37 -2.28 16 20 C -0.09 -1.30 5.88 -104.62 -0.62 -1.91 16 21 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 22 C -0.13 -1.89 9.36 -39.58 -0.37 -2.26 16 23 C -0.07 -1.08 5.88 -104.62 -0.62 -1.69 16 24 C -0.12 -1.67 9.19 36.00 0.33 -1.34 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.90 6.39 -51.93 -0.33 0.57 16 29 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.08 1.60 3.72 -51.93 -0.19 1.41 16 31 H 0.06 0.97 6.73 -51.93 -0.35 0.63 16 32 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.09 1.41 4.91 -51.93 -0.26 1.16 16 34 H 0.09 1.44 5.22 -51.93 -0.27 1.17 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.06 0.75 8.09 -51.92 -0.42 0.33 16 37 H 0.07 0.96 5.94 -51.93 -0.31 0.65 16 38 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 41 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 42 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 45 H 0.07 1.18 6.37 -51.93 -0.33 0.85 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -32.53 353.45 -7.66 -40.18 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.10 Total: 4.70 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -2.22 Total: -15.60 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.52 Total: -35.77 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.09 Total: -15.07 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.27 Total: 16.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.53 -7.66 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271346494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.672 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds