Wall clock time and date at job start Tue Mar 31 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46886 * 2 1 4 4 N 1.46497 * 109.46894 * 180.02562 * 3 2 1 5 5 C 1.37100 * 119.99939 * 263.05337 * 4 3 2 6 6 H 1.07994 * 120.00003 * 142.22063 * 5 4 3 7 7 C 1.38956 * 119.99982 * 322.21351 * 5 4 3 8 8 N 1.31412 * 119.99677 * 157.07477 * 7 5 4 9 9 Si 1.86802 * 119.99999 * 337.07143 * 7 5 4 10 10 H 1.48499 * 109.46815 * 95.20669 * 9 7 5 11 11 H 1.48497 * 109.46811 * 215.20121 * 9 7 5 12 12 H 1.48493 * 109.47154 * 335.20550 * 9 7 5 13 13 C 1.34773 * 120.00031 * 83.06021 * 4 3 2 14 14 O 1.21294 * 119.99996 * 180.02562 * 13 4 3 15 15 C 1.50705 * 120.00105 * 359.97438 * 13 4 3 16 16 C 1.50694 * 109.47298 * 180.02562 * 15 13 4 17 17 C 1.38234 * 120.00243 * 269.72897 * 16 15 13 18 18 C 1.50703 * 119.99728 * 359.97438 * 17 16 15 19 19 C 1.38231 * 120.00121 * 179.78733 * 17 16 15 20 20 C 1.38230 * 120.00137 * 0.43938 * 19 17 16 21 21 C 1.50701 * 120.00273 * 179.83021 * 20 19 17 22 22 C 1.38239 * 119.99953 * 359.81578 * 20 19 17 23 23 C 1.38236 * 119.99888 * 359.97438 * 22 20 19 24 24 C 1.50698 * 120.00016 * 180.02562 * 23 22 20 25 25 H 1.09003 * 109.47096 * 299.99488 * 1 2 3 26 26 H 1.08994 * 109.47449 * 59.99674 * 1 2 3 27 27 H 1.08999 * 109.46705 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47096 * 240.00511 * 2 1 3 29 29 H 1.09000 * 109.47075 * 119.99756 * 2 1 3 30 30 H 1.09003 * 109.46835 * 60.00352 * 3 2 1 31 31 H 1.08994 * 109.47342 * 300.00391 * 3 2 1 32 32 H 0.97000 * 119.99650 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46901 * 300.00717 * 15 13 4 34 34 H 1.09003 * 109.46527 * 60.00428 * 15 13 4 35 35 H 1.09000 * 109.47235 * 89.99535 * 18 17 16 36 36 H 1.09007 * 109.47232 * 210.00062 * 18 17 16 37 37 H 1.09000 * 109.47038 * 329.99696 * 18 17 16 38 38 H 1.08002 * 119.99994 * 180.27725 * 19 17 16 39 39 H 1.08999 * 109.47580 * 269.98281 * 21 20 19 40 40 H 1.09001 * 109.47005 * 29.98357 * 21 20 19 41 41 H 1.09005 * 109.46873 * 149.97824 * 21 20 19 42 42 H 1.08002 * 120.00012 * 179.97438 * 22 20 19 43 43 H 1.09002 * 109.46793 * 269.97686 * 24 23 22 44 44 H 1.09004 * 109.47289 * 29.96976 * 24 23 22 45 45 H 1.08999 * 109.47216 * 149.97741 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.5860 1.1777 6 1 5.1012 1.0291 1.3439 7 6 3.7151 2.4480 2.1582 8 7 4.0678 2.2754 3.4123 9 14 2.5742 3.8523 1.6935 10 1 1.1641 3.4293 1.8878 11 1 2.8611 5.0283 2.5536 12 1 2.7905 4.2154 0.2700 13 6 4.1783 1.3017 -1.1595 14 8 5.3913 1.3012 -1.1600 15 6 3.4243 1.1436 -2.4548 16 6 4.4031 1.0049 -3.5922 17 6 4.8476 2.1291 -4.2625 18 6 4.3530 3.4934 -3.8562 19 6 5.7488 2.0022 -5.3029 20 6 6.1985 0.7503 -5.6790 21 6 7.1781 0.6116 -6.8158 22 6 5.7499 -0.3744 -5.0121 23 6 4.8520 -0.2471 -3.9688 24 6 4.3634 -1.4731 -3.2414 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.7353 2.8770 4.0967 33 1 2.7979 0.2530 -2.4041 34 1 2.7973 2.0199 -2.6194 35 1 5.0148 3.9083 -3.0960 36 1 4.3423 4.1500 -4.7263 37 1 3.3441 3.4088 -3.4526 38 1 6.0996 2.8809 -5.8238 39 1 6.6334 0.4965 -7.7529 40 1 7.8042 1.5024 -6.8666 41 1 7.8053 -0.2643 -6.6501 42 1 6.1009 -1.3525 -5.3062 43 1 3.4640 -1.8501 -3.7283 44 1 5.1370 -2.2408 -3.2628 45 1 4.1357 -1.2154 -2.2071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271346494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:56 Heat of formation + Delta-G solvation = -42.060538 kcal Electronic energy + Delta-G solvation = -23946.023120 eV Core-core repulsion = 20734.187850 eV Total energy + Delta-G solvation = -3211.835269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32633 -40.02066 -37.24881 -35.26020 -34.59100 -34.46050 -33.27755 -30.90025 -28.80399 -27.67163 -27.59560 -26.98350 -25.36866 -22.76683 -21.66305 -21.48200 -20.23160 -18.92634 -17.99819 -17.46950 -17.16673 -16.63592 -15.86575 -15.62438 -15.38060 -15.20362 -14.93338 -14.58716 -14.42245 -14.15324 -14.07103 -13.89161 -13.81836 -13.62300 -13.49933 -13.47498 -13.32615 -13.15329 -12.71673 -12.48921 -12.44459 -12.37988 -12.11602 -12.02903 -11.88072 -11.72178 -11.67471 -11.39362 -11.02785 -10.40215 -9.68484 -9.38521 -9.21617 -8.51966 -6.12178 0.47095 0.53237 1.16751 1.29530 1.41546 1.97622 2.16650 2.61934 2.85102 3.05188 3.76781 3.86539 3.93805 4.01163 4.02559 4.11661 4.16773 4.24327 4.40194 4.44861 4.48335 4.56775 4.61178 4.65184 4.67692 4.71454 4.77762 4.80050 4.82379 4.88783 4.98107 5.02327 5.04272 5.10953 5.19400 5.30468 5.38521 5.41247 5.47643 5.57169 5.65280 5.72105 5.83778 6.04643 6.22915 6.59262 6.96977 7.32744 7.92122 8.65782 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019075 B = 0.005163 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.512739 B = 5421.700001 C = 5890.789734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.084 3.916 4 N -0.479 5.479 5 C -0.329 4.329 6 H 0.039 0.961 7 C 0.015 3.985 8 N -0.911 5.911 9 Si 0.940 3.060 10 H -0.238 1.238 11 H -0.289 1.289 12 H -0.257 1.257 13 C 0.469 3.531 14 O -0.607 6.607 15 C -0.093 4.093 16 C -0.086 4.086 17 C -0.084 4.084 18 C -0.116 4.116 19 C -0.139 4.139 20 C -0.092 4.092 21 C -0.107 4.107 22 C -0.139 4.139 23 C -0.082 4.082 24 C -0.113 4.113 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.279 0.721 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.137 0.863 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.387 -2.461 -19.142 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.039 4.039 4 N -0.201 5.201 5 C -0.457 4.457 6 H 0.057 0.943 7 C -0.187 4.187 8 N -0.549 5.549 9 Si 0.763 3.237 10 H -0.162 1.162 11 H -0.216 1.216 12 H -0.181 1.181 13 C 0.260 3.740 14 O -0.491 6.491 15 C -0.133 4.133 16 C -0.086 4.086 17 C -0.084 4.084 18 C -0.172 4.172 19 C -0.157 4.157 20 C -0.092 4.092 21 C -0.163 4.163 22 C -0.157 4.157 23 C -0.082 4.082 24 C -0.169 4.169 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.155 0.845 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.155 0.845 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.792 -2.411 -18.917 20.244 hybrid contribution 0.259 0.610 1.027 1.222 sum -6.534 -1.802 -17.890 19.131 Atomic orbital electron populations 1.21703 0.92759 1.02968 1.02612 1.21874 0.97799 0.95573 1.01950 1.22149 0.80289 0.98967 1.02462 1.43893 1.05471 1.65634 1.05130 1.18574 1.09520 1.25522 0.92106 0.94288 1.26098 0.99392 0.99172 0.94047 1.69888 1.46357 1.37645 1.00979 0.85955 0.79783 0.78616 0.79371 1.16227 1.21551 1.18134 1.21022 0.87836 0.79821 0.85367 1.90541 1.16494 1.54802 1.87274 1.20770 0.97588 1.05479 0.89413 1.19237 0.99764 0.93374 0.96274 1.19954 0.97282 0.95285 0.95923 1.20859 1.01088 0.93267 1.01993 1.21063 0.98555 0.97928 0.98142 1.20220 0.98105 0.92750 0.98123 1.20787 0.96945 1.03197 0.95373 1.21074 0.98713 0.99238 0.96662 1.19967 0.97139 0.94744 0.96400 1.20820 1.02420 0.94787 0.98922 0.93121 0.90529 0.90991 0.91011 0.93848 0.91947 0.88800 0.91152 0.86857 0.87096 0.93309 0.89080 0.91012 0.84522 0.89704 0.91029 0.90981 0.84462 0.88658 0.90910 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.91 71.98 0.71 -2.54 16 2 C -0.13 -4.23 6.13 30.60 0.19 -4.04 16 3 C 0.08 3.16 3.74 86.38 0.32 3.48 16 4 N -0.48 -23.49 2.18 -635.54 -1.39 -24.88 16 5 C -0.33 -19.76 9.35 84.04 0.79 -18.97 16 6 H 0.04 2.77 7.92 -2.91 -0.02 2.74 16 7 C 0.01 0.85 5.24 84.93 0.45 1.30 16 8 N -0.91 -55.13 13.96 21.67 0.30 -54.83 16 9 Si 0.94 42.24 25.12 68.60 1.72 43.96 16 10 H -0.24 -9.26 6.67 99.48 0.66 -8.59 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 13 C 0.47 22.30 7.16 87.66 0.63 22.93 16 14 O -0.61 -35.13 15.91 -3.07 -0.05 -35.18 16 15 C -0.09 -3.21 3.36 29.10 0.10 -3.11 16 16 C -0.09 -2.97 4.37 -19.87 -0.09 -3.06 16 17 C -0.08 -2.73 5.88 -19.87 -0.12 -2.85 16 18 C -0.12 -3.34 9.60 71.24 0.68 -2.66 16 19 C -0.14 -3.92 9.36 22.27 0.21 -3.71 16 20 C -0.09 -2.41 5.88 -19.87 -0.12 -2.53 16 21 C -0.11 -1.91 10.01 71.24 0.71 -1.20 16 22 C -0.14 -3.89 9.36 22.27 0.21 -3.68 16 23 C -0.08 -2.63 5.88 -19.87 -0.12 -2.75 16 24 C -0.11 -3.16 9.19 71.24 0.65 -2.50 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 28 H 0.07 2.06 6.39 -2.39 -0.02 2.04 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 2.52 3.72 -2.39 -0.01 2.51 16 31 H 0.09 2.85 6.73 -2.39 -0.02 2.83 16 32 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 33 H 0.11 3.31 4.91 -2.39 -0.01 3.30 16 34 H 0.11 3.29 5.22 -2.39 -0.01 3.27 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 2.01 8.09 -2.38 -0.02 1.99 16 37 H 0.07 1.93 5.94 -2.39 -0.01 1.92 16 38 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 41 H 0.07 1.18 8.09 -2.38 -0.02 1.16 16 42 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 43 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.07 1.86 8.09 -2.38 -0.02 1.84 16 45 H 0.04 1.46 6.37 -2.39 -0.02 1.45 16 Total: -1.00 -77.45 353.45 6.73 -70.72 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.93 Total: 26.08 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 5.21 Total: -25.88 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -1.08 Total: -79.70 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.05 Total: -35.18 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.72 Total: 43.96 kcal Total: -77.45 6.73 -70.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271346494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.658 kcal (2) G-P(sol) polarization free energy of solvation -77.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds