Wall clock time and date at job start Tue Mar 31 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47111 * 2 1 4 4 N 1.46504 * 109.47198 * 185.37582 * 3 2 1 5 5 C 1.37097 * 119.99820 * 85.44151 * 4 3 2 6 6 H 1.07998 * 119.99795 * 170.88816 * 5 4 3 7 7 C 1.38953 * 120.00238 * 350.88010 * 5 4 3 8 8 N 1.31411 * 119.99831 * 359.64209 * 7 5 4 9 9 Si 1.86795 * 119.99992 * 179.63895 * 7 5 4 10 10 H 1.48500 * 109.47246 * 90.00012 * 9 7 5 11 11 H 1.48498 * 109.47030 * 210.00376 * 9 7 5 12 12 H 1.48501 * 109.47198 * 330.00228 * 9 7 5 13 13 C 1.34778 * 119.99660 * 265.44314 * 4 3 2 14 14 O 1.21286 * 120.00028 * 355.32556 * 13 4 3 15 15 C 1.50703 * 119.99497 * 175.32829 * 13 4 3 16 16 H 1.09003 * 109.47067 * 327.04893 * 15 13 4 17 17 C 1.52995 * 109.47223 * 87.05648 * 15 13 4 18 18 C 1.53002 * 109.46704 * 207.05251 * 15 13 4 19 19 C 1.50698 * 109.46867 * 174.99796 * 18 15 13 20 20 C 1.38234 * 120.00459 * 269.72919 * 19 18 15 21 21 C 1.38237 * 120.00379 * 179.79275 * 20 19 18 22 22 C 1.38231 * 119.99777 * 0.45319 * 21 20 19 23 23 C 1.50697 * 120.00157 * 179.79117 * 22 21 20 24 24 C 1.38234 * 120.00058 * 359.77851 * 22 21 20 25 25 C 1.38234 * 119.99948 * 90.00081 * 19 18 15 26 26 H 1.08996 * 109.46619 * 300.00100 * 1 2 3 27 27 H 1.08994 * 109.47174 * 60.00146 * 1 2 3 28 28 H 1.08992 * 109.47163 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47074 * 239.99639 * 2 1 3 30 30 H 1.09001 * 109.46784 * 119.99940 * 2 1 3 31 31 H 1.08999 * 109.47516 * 65.37493 * 3 2 1 32 32 H 1.08995 * 109.47116 * 305.37520 * 3 2 1 33 33 H 0.96998 * 120.00044 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47062 * 306.31615 * 17 15 13 35 35 H 1.08992 * 109.47436 * 66.31932 * 17 15 13 36 36 H 1.09003 * 109.47216 * 186.31974 * 17 15 13 37 37 H 1.08994 * 109.47053 * 294.99828 * 18 15 13 38 38 H 1.09005 * 109.46992 * 55.00370 * 18 15 13 39 39 H 1.08003 * 119.99683 * 359.97438 * 20 19 18 40 40 H 1.08001 * 120.00204 * 180.25583 * 21 20 19 41 41 H 1.09002 * 109.47724 * 269.98509 * 23 22 21 42 42 H 1.09004 * 109.46819 * 29.98559 * 23 22 21 43 43 H 1.09001 * 109.47294 * 149.98161 * 23 22 21 44 44 H 1.08001 * 119.99997 * 179.97438 * 24 22 21 45 45 H 1.08002 * 120.00165 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4994 1.4445 -0.1294 5 6 4.0775 1.3881 -1.3713 6 1 5.1417 1.5373 -1.4787 7 6 3.2942 1.1389 -2.4916 8 7 2.0004 0.9503 -2.3600 9 14 4.0804 1.0721 -4.1847 10 1 4.5049 -0.3202 -4.4788 11 1 3.0968 1.5157 -5.2050 12 1 5.2645 1.9677 -4.2164 13 6 4.2735 1.5018 0.9724 14 8 3.7643 1.6371 2.0649 15 6 5.7716 1.3978 0.8468 16 1 6.0217 0.7407 0.0139 17 6 6.3600 2.7875 0.5947 18 6 6.3533 0.8250 2.1409 19 6 7.8347 0.6060 1.9720 20 6 8.3052 -0.6061 1.5026 21 6 9.6639 -0.8054 1.3436 22 6 10.5525 0.2041 1.6629 23 6 12.0339 -0.0148 1.4941 24 6 10.0823 1.4146 2.1368 25 6 8.7234 1.6154 2.2918 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7575 1.9278 0.9342 32 1 1.6003 1.9833 -0.8379 33 1 1.4535 0.7767 -3.1421 34 1 5.8642 3.2417 -0.2632 35 1 6.2075 3.4118 1.4749 36 1 7.4274 2.6989 0.3925 37 1 6.1803 1.5251 2.9581 38 1 5.8691 -0.1250 2.3675 39 1 7.6111 -1.3963 1.2573 40 1 10.0312 -1.7510 0.9730 41 1 12.4485 -0.4222 2.4162 42 1 12.2068 -0.7155 0.6772 43 1 12.5179 0.9350 1.2666 44 1 10.7766 2.2032 2.3867 45 1 8.3561 2.5610 2.6622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272242485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:47 Heat of formation + Delta-G solvation = -21.926345 kcal Electronic energy + Delta-G solvation = -23393.462984 eV Core-core repulsion = 20182.500799 eV Total energy + Delta-G solvation = -3210.962185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.54823 -38.59755 -35.58684 -34.47595 -32.33384 -31.68252 -31.18293 -30.75638 -28.02357 -25.83193 -25.21213 -24.43196 -22.57630 -21.96410 -20.55928 -19.87355 -18.90317 -16.79210 -16.42739 -15.58784 -15.31467 -14.88284 -14.37157 -14.30734 -13.90316 -13.78126 -13.55889 -13.34371 -13.16773 -12.97398 -12.52183 -12.32983 -12.15667 -11.92762 -11.71279 -11.62156 -11.32009 -11.27167 -10.98205 -10.84014 -10.76771 -10.58306 -10.52227 -10.41990 -10.29386 -10.13543 -10.00686 -9.63756 -8.76241 -8.74361 -8.34346 -8.12964 -7.70338 -6.19403 -3.87536 1.50810 1.57340 3.09769 3.19635 3.21278 3.87532 3.97074 4.07129 4.78659 4.92476 4.94122 5.10716 5.16634 5.29212 5.30489 5.51613 5.59298 5.67213 5.74163 5.77085 5.85115 5.90295 6.14239 6.19862 6.20139 6.23756 6.32720 6.35020 6.43741 6.47785 6.57445 6.62158 6.71099 6.77218 6.78362 6.82462 6.98950 7.00627 7.16717 7.19843 7.20454 7.35334 7.61305 7.80491 7.92227 8.51883 9.10083 9.60000 9.99204 10.65289 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.004461 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.396223 B = 6275.682182 C = 7168.912868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 C 0.132 3.868 4 N -0.442 5.442 5 C -0.321 4.321 6 H 0.100 0.900 7 C 0.029 3.971 8 N -0.866 5.866 9 Si 0.923 3.077 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.456 3.544 14 O -0.613 6.613 15 C -0.087 4.087 16 H 0.088 0.912 17 C -0.136 4.136 18 C -0.062 4.062 19 C -0.070 4.070 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.102 4.102 23 C -0.111 4.111 24 C -0.122 4.122 25 C -0.111 4.111 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.033 0.967 29 H 0.087 0.913 30 H 0.020 0.980 31 H 0.032 0.968 32 H 0.113 0.887 33 H 0.264 0.736 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.117 0.883 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.916 -1.409 3.196 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.145 4.145 3 C 0.010 3.990 4 N -0.159 5.159 5 C -0.449 4.449 6 H 0.117 0.883 7 C -0.173 4.173 8 N -0.506 5.506 9 Si 0.750 3.250 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.245 3.755 14 O -0.501 6.501 15 C -0.109 4.109 16 H 0.106 0.894 17 C -0.194 4.194 18 C -0.099 4.099 19 C -0.070 4.070 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.102 4.102 23 C -0.167 4.167 24 C -0.140 4.140 25 C -0.129 4.129 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.135 0.865 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.470 -1.369 3.546 12.083 hybrid contribution 0.291 -0.166 -1.055 1.107 sum 11.761 -1.536 2.491 12.120 Atomic orbital electron populations 1.21544 0.97563 0.99377 1.00537 1.21715 0.93924 0.98470 1.00348 1.21579 0.80147 0.97091 1.00200 1.43860 1.05663 1.61454 1.04920 1.19776 0.94549 1.47710 0.82837 0.88258 1.25251 0.95586 0.96667 0.99842 1.70207 1.04201 1.46788 1.29414 0.85977 0.78752 0.78572 0.81704 1.20445 1.20844 1.19610 1.19987 0.88414 0.82975 0.84153 1.90502 1.75468 1.57193 1.26928 1.20971 0.93725 0.98354 0.97833 0.89400 1.21716 0.99993 0.95783 1.01917 1.20445 0.89350 1.02060 0.98087 1.20048 0.96103 0.93513 0.97305 1.21104 0.95317 0.97301 0.99425 1.20970 0.93159 0.98590 1.01080 1.19830 0.95651 0.94373 1.00376 1.20744 0.92050 1.02143 1.01796 1.20965 0.95459 0.96799 1.00787 1.21076 0.92793 0.98831 1.00246 0.94732 0.92435 0.94753 0.89459 0.96134 0.94925 0.86907 0.92449 0.91800 0.93037 0.92747 0.90503 0.91170 0.86040 0.86495 0.91610 0.91830 0.91856 0.86543 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.91 37.16 0.37 -2.23 16 2 C -0.11 -2.46 5.41 -26.73 -0.14 -2.61 16 3 C 0.13 3.29 4.76 -4.04 -0.02 3.27 16 4 N -0.44 -11.14 2.63 -114.81 -0.30 -11.45 16 5 C -0.32 -7.90 8.85 -14.93 -0.13 -8.03 16 6 H 0.10 2.33 5.53 -52.49 -0.29 2.04 16 7 C 0.03 0.70 5.28 -17.47 -0.09 0.61 16 8 N -0.87 -21.18 7.38 55.50 0.41 -20.77 16 9 Si 0.92 19.12 29.55 -169.99 -5.02 14.10 16 10 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 13 C 0.46 11.08 6.72 -10.98 -0.07 11.00 16 14 O -0.61 -16.42 15.72 5.55 0.09 -16.34 16 15 C -0.09 -1.73 1.86 -91.77 -0.17 -1.90 16 16 H 0.09 1.78 6.71 -51.93 -0.35 1.43 16 17 C -0.14 -2.42 8.31 37.16 0.31 -2.11 16 18 C -0.06 -1.09 4.31 -27.88 -0.12 -1.21 16 19 C -0.07 -1.06 4.72 -104.63 -0.49 -1.56 16 20 C -0.11 -1.63 9.70 -39.58 -0.38 -2.01 16 21 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 22 C -0.10 -1.23 5.88 -104.63 -0.62 -1.84 16 23 C -0.11 -0.99 10.01 36.00 0.36 -0.63 16 24 C -0.12 -1.51 9.70 -39.58 -0.38 -1.89 16 25 C -0.11 -1.54 8.13 -39.58 -0.32 -1.86 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.18 6.25 -51.93 -0.32 1.86 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.03 0.83 7.24 -51.93 -0.38 0.46 16 32 H 0.11 2.91 5.80 -51.93 -0.30 2.61 16 33 H 0.26 6.21 8.31 -40.82 -0.34 5.87 16 34 H 0.06 1.21 7.41 -51.93 -0.38 0.82 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.86 6.69 -51.93 -0.35 0.51 16 37 H 0.08 1.39 7.97 -51.93 -0.41 0.97 16 38 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 39 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 40 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 43 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -27.60 357.06 -9.15 -36.76 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.41 Total: 7.24 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -2.30 Total: -14.92 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.11 Total: -32.22 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.09 Total: -16.34 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.60 -9.15 -36.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272242485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.829 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds