Wall clock time and date at job start Tue Mar 31 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47111 * 2 1 4 4 N 1.46504 * 109.47198 * 185.37582 * 3 2 1 5 5 C 1.37097 * 119.99820 * 85.44151 * 4 3 2 6 6 H 1.07998 * 119.99795 * 170.88816 * 5 4 3 7 7 C 1.38953 * 120.00238 * 350.88010 * 5 4 3 8 8 N 1.31411 * 119.99831 * 359.64209 * 7 5 4 9 9 Si 1.86795 * 119.99992 * 179.63895 * 7 5 4 10 10 H 1.48500 * 109.47246 * 90.00012 * 9 7 5 11 11 H 1.48498 * 109.47030 * 210.00376 * 9 7 5 12 12 H 1.48501 * 109.47198 * 330.00228 * 9 7 5 13 13 C 1.34778 * 119.99660 * 265.44314 * 4 3 2 14 14 O 1.21286 * 120.00028 * 355.32556 * 13 4 3 15 15 C 1.50703 * 119.99497 * 175.32829 * 13 4 3 16 16 H 1.09003 * 109.47067 * 327.04893 * 15 13 4 17 17 C 1.52995 * 109.47223 * 87.05648 * 15 13 4 18 18 C 1.53002 * 109.46704 * 207.05251 * 15 13 4 19 19 C 1.50698 * 109.46867 * 174.99796 * 18 15 13 20 20 C 1.38234 * 120.00459 * 269.72919 * 19 18 15 21 21 C 1.38237 * 120.00379 * 179.79275 * 20 19 18 22 22 C 1.38231 * 119.99777 * 0.45319 * 21 20 19 23 23 C 1.50697 * 120.00157 * 179.79117 * 22 21 20 24 24 C 1.38234 * 120.00058 * 359.77851 * 22 21 20 25 25 C 1.38234 * 119.99948 * 90.00081 * 19 18 15 26 26 H 1.08996 * 109.46619 * 300.00100 * 1 2 3 27 27 H 1.08994 * 109.47174 * 60.00146 * 1 2 3 28 28 H 1.08992 * 109.47163 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47074 * 239.99639 * 2 1 3 30 30 H 1.09001 * 109.46784 * 119.99940 * 2 1 3 31 31 H 1.08999 * 109.47516 * 65.37493 * 3 2 1 32 32 H 1.08995 * 109.47116 * 305.37520 * 3 2 1 33 33 H 0.96998 * 120.00044 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47062 * 306.31615 * 17 15 13 35 35 H 1.08992 * 109.47436 * 66.31932 * 17 15 13 36 36 H 1.09003 * 109.47216 * 186.31974 * 17 15 13 37 37 H 1.08994 * 109.47053 * 294.99828 * 18 15 13 38 38 H 1.09005 * 109.46992 * 55.00370 * 18 15 13 39 39 H 1.08003 * 119.99683 * 359.97438 * 20 19 18 40 40 H 1.08001 * 120.00204 * 180.25583 * 21 20 19 41 41 H 1.09002 * 109.47724 * 269.98509 * 23 22 21 42 42 H 1.09004 * 109.46819 * 29.98559 * 23 22 21 43 43 H 1.09001 * 109.47294 * 149.98161 * 23 22 21 44 44 H 1.08001 * 119.99997 * 179.97438 * 24 22 21 45 45 H 1.08002 * 120.00165 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4994 1.4445 -0.1294 5 6 4.0775 1.3881 -1.3713 6 1 5.1417 1.5373 -1.4787 7 6 3.2942 1.1389 -2.4916 8 7 2.0004 0.9503 -2.3600 9 14 4.0804 1.0721 -4.1847 10 1 4.5049 -0.3202 -4.4788 11 1 3.0968 1.5157 -5.2050 12 1 5.2645 1.9677 -4.2164 13 6 4.2735 1.5018 0.9724 14 8 3.7643 1.6371 2.0649 15 6 5.7716 1.3978 0.8468 16 1 6.0217 0.7407 0.0139 17 6 6.3600 2.7875 0.5947 18 6 6.3533 0.8250 2.1409 19 6 7.8347 0.6060 1.9720 20 6 8.3052 -0.6061 1.5026 21 6 9.6639 -0.8054 1.3436 22 6 10.5525 0.2041 1.6629 23 6 12.0339 -0.0148 1.4941 24 6 10.0823 1.4146 2.1368 25 6 8.7234 1.6154 2.2918 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7575 1.9278 0.9342 32 1 1.6003 1.9833 -0.8379 33 1 1.4535 0.7767 -3.1421 34 1 5.8642 3.2417 -0.2632 35 1 6.2075 3.4118 1.4749 36 1 7.4274 2.6989 0.3925 37 1 6.1803 1.5251 2.9581 38 1 5.8691 -0.1250 2.3675 39 1 7.6111 -1.3963 1.2573 40 1 10.0312 -1.7510 0.9730 41 1 12.4485 -0.4222 2.4162 42 1 12.2068 -0.7155 0.6772 43 1 12.5179 0.9350 1.2666 44 1 10.7766 2.2032 2.3867 45 1 8.3561 2.5610 2.6622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272242485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:46 Heat of formation + Delta-G solvation = -33.108830 kcal Electronic energy + Delta-G solvation = -23393.947893 eV Core-core repulsion = 20182.500799 eV Total energy + Delta-G solvation = -3211.447094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96966 -40.10517 -37.38268 -35.99469 -34.00207 -33.40739 -32.69277 -31.76343 -29.18326 -27.65442 -26.71009 -25.97708 -23.73331 -23.34827 -22.05284 -21.37510 -20.73839 -18.60245 -18.18731 -16.75705 -16.45861 -16.21947 -16.08754 -15.88153 -15.59617 -15.34334 -14.98387 -14.65999 -14.45770 -14.21710 -13.96932 -13.66884 -13.38299 -13.33523 -13.09971 -12.98646 -12.87171 -12.78423 -12.67320 -12.32749 -12.28867 -12.08126 -12.01038 -11.95458 -11.80347 -11.76366 -11.61658 -11.51205 -10.69136 -10.16188 -9.75174 -9.65864 -9.29434 -8.07257 -5.81706 0.47168 0.56086 1.44101 1.49921 1.59563 2.06442 2.31602 2.83984 3.08106 3.21981 3.90026 3.93180 4.11220 4.14702 4.21326 4.24340 4.32898 4.43304 4.51369 4.55318 4.64211 4.69864 4.76082 4.81426 4.88801 4.90016 4.92811 4.95764 4.98676 5.08064 5.14030 5.23498 5.27125 5.31088 5.32867 5.37314 5.41201 5.47389 5.58645 5.68203 5.75889 5.83636 5.84660 5.96705 6.19902 6.58380 7.18375 7.66850 8.06709 8.78228 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.004461 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.396223 B = 6275.682182 C = 7168.912868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.095 4.095 3 C 0.135 3.865 4 N -0.453 5.453 5 C -0.343 4.343 6 H 0.108 0.892 7 C -0.008 4.008 8 N -0.880 5.880 9 Si 0.989 3.011 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.264 1.264 13 C 0.441 3.559 14 O -0.647 6.647 15 C -0.078 4.078 16 H 0.082 0.918 17 C -0.125 4.125 18 C -0.050 4.050 19 C -0.089 4.089 20 C -0.128 4.128 21 C -0.125 4.125 22 C -0.100 4.100 23 C -0.110 4.110 24 C -0.124 4.124 25 C -0.118 4.118 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.004 0.996 31 H 0.016 0.984 32 H 0.104 0.896 33 H 0.267 0.733 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.143 0.857 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.283 -1.563 2.183 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.134 4.134 3 C 0.012 3.988 4 N -0.169 5.169 5 C -0.470 4.470 6 H 0.126 0.874 7 C -0.209 4.209 8 N -0.520 5.520 9 Si 0.813 3.187 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.189 1.189 13 C 0.231 3.769 14 O -0.538 6.538 15 C -0.099 4.099 16 H 0.100 0.900 17 C -0.183 4.183 18 C -0.088 4.088 19 C -0.089 4.089 20 C -0.146 4.146 21 C -0.143 4.143 22 C -0.100 4.100 23 C -0.166 4.166 24 C -0.142 4.142 25 C -0.136 4.136 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.023 0.977 31 H 0.034 0.966 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.160 0.840 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.837 -1.524 2.529 14.149 hybrid contribution -0.448 -0.135 -0.722 0.860 sum 13.389 -1.659 1.807 13.612 Atomic orbital electron populations 1.21453 0.94699 1.00959 1.00938 1.21568 0.96416 0.96835 0.98549 1.21530 0.80700 0.97893 0.98696 1.44122 1.05850 1.61251 1.05677 1.20069 0.95184 1.48948 0.82840 0.87450 1.26032 0.96092 0.95870 1.02868 1.70292 1.05047 1.46239 1.30372 0.84974 0.78016 0.78463 0.77215 1.20288 1.20730 1.18877 1.20800 0.90351 0.82320 0.83444 1.90460 1.76543 1.58734 1.28026 1.20909 0.90558 0.99658 0.98812 0.89961 1.21631 1.01095 0.94212 1.01368 1.20248 0.91348 1.00644 0.96515 1.19833 0.94480 0.94826 0.99760 1.21199 0.96413 0.96993 0.99964 1.21240 0.92422 0.99847 1.00803 1.20267 0.97371 0.93769 0.98619 1.20809 0.89699 1.03260 1.02841 1.21287 0.95094 0.97748 1.00052 1.21199 0.93483 0.98664 1.00237 0.93791 0.92511 0.92572 0.91192 0.97681 0.96612 0.87797 0.92216 0.93162 0.92814 0.90284 0.91465 0.92869 0.86445 0.84458 0.90324 0.90896 0.90592 0.83963 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 9.91 71.98 0.71 -4.06 16 2 C -0.10 -4.52 5.41 30.60 0.17 -4.36 16 3 C 0.13 6.93 4.76 86.38 0.41 7.34 16 4 N -0.45 -23.57 2.63 -635.54 -1.67 -25.24 16 5 C -0.34 -17.11 8.85 84.04 0.74 -16.37 16 6 H 0.11 5.06 5.53 -2.91 -0.02 5.04 16 7 C -0.01 -0.36 5.28 84.93 0.45 0.09 16 8 N -0.88 -43.21 7.38 21.66 0.16 -43.05 16 9 Si 0.99 38.63 29.55 68.60 2.03 40.65 16 10 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 12 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 13 C 0.44 22.24 6.72 87.66 0.59 22.83 16 14 O -0.65 -36.24 15.72 -3.05 -0.05 -36.29 16 15 C -0.08 -3.17 1.86 -11.54 -0.02 -3.19 16 16 H 0.08 3.40 6.71 -2.39 -0.02 3.39 16 17 C -0.13 -4.44 8.31 71.98 0.60 -3.84 16 18 C -0.05 -1.81 4.31 29.85 0.13 -1.68 16 19 C -0.09 -2.70 4.72 -19.87 -0.09 -2.79 16 20 C -0.13 -3.60 9.70 22.27 0.22 -3.39 16 21 C -0.13 -2.93 9.70 22.27 0.22 -2.71 16 22 C -0.10 -2.11 5.88 -19.87 -0.12 -2.23 16 23 C -0.11 -1.54 10.01 71.23 0.71 -0.83 16 24 C -0.12 -2.72 9.70 22.27 0.22 -2.50 16 25 C -0.12 -3.09 8.13 22.27 0.18 -2.91 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 3.57 6.25 -2.39 -0.01 3.55 16 30 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.02 0.84 7.24 -2.39 -0.02 0.82 16 32 H 0.10 5.52 5.80 -2.39 -0.01 5.51 16 33 H 0.27 12.46 8.31 -92.71 -0.77 11.69 16 34 H 0.05 1.90 7.41 -2.39 -0.02 1.88 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.39 6.69 -2.39 -0.02 2.37 16 37 H 0.07 2.52 7.97 -2.39 -0.02 2.50 16 38 H 0.05 2.05 8.08 -2.38 -0.02 2.03 16 39 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.91 8.09 -2.38 -0.02 0.89 16 43 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 44 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 45 H 0.13 3.09 8.04 -2.91 -0.02 3.06 16 Total: -1.00 -60.18 357.06 6.53 -53.65 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.95 Total: 30.87 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 5.11 Total: -20.60 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -1.51 Total: -68.29 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.05 Total: -36.29 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.65 kcal Total: -60.18 6.53 -53.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272242485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.543 kcal (2) G-P(sol) polarization free energy of solvation -60.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds