Wall clock time and date at job start Tue Mar 31 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47248 * 2 1 4 4 N 1.46496 * 109.47516 * 181.76552 * 3 2 1 5 5 C 1.37099 * 120.00289 * 267.68770 * 4 3 2 6 6 H 1.07998 * 120.00574 * 185.77945 * 5 4 3 7 7 C 1.38956 * 119.99915 * 5.78651 * 5 4 3 8 8 N 1.31413 * 119.99800 * 20.63216 * 7 5 4 9 9 Si 1.86800 * 120.00008 * 200.63958 * 7 5 4 10 10 H 1.48500 * 109.47083 * 89.99735 * 9 7 5 11 11 H 1.48501 * 109.47111 * 209.99438 * 9 7 5 12 12 H 1.48499 * 109.47231 * 329.99756 * 9 7 5 13 13 C 1.34779 * 120.00074 * 87.68476 * 4 3 2 14 14 O 1.21290 * 119.99521 * 3.67501 * 13 4 3 15 15 C 1.50694 * 120.00117 * 183.66847 * 13 4 3 16 16 H 1.08995 * 109.47390 * 31.46275 * 15 13 4 17 17 C 1.53006 * 109.47289 * 271.46496 * 15 13 4 18 18 C 1.52999 * 109.47220 * 151.46845 * 15 13 4 19 19 C 1.50703 * 109.47298 * 185.00149 * 18 15 13 20 20 C 1.38236 * 120.00233 * 89.99230 * 19 18 15 21 21 C 1.38227 * 119.99923 * 179.97438 * 20 19 18 22 22 C 1.38239 * 120.00345 * 0.26203 * 21 20 19 23 23 C 1.50696 * 119.99987 * 179.72326 * 22 21 20 24 24 C 1.38236 * 119.99405 * 359.46353 * 22 21 20 25 25 C 1.38235 * 119.99522 * 269.97496 * 19 18 15 26 26 H 1.08993 * 109.47240 * 299.99779 * 1 2 3 27 27 H 1.09002 * 109.47134 * 60.00298 * 1 2 3 28 28 H 1.08998 * 109.46769 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47625 * 240.00001 * 2 1 3 30 30 H 1.09002 * 109.47134 * 119.99702 * 2 1 3 31 31 H 1.09002 * 109.47242 * 61.76758 * 3 2 1 32 32 H 1.08997 * 109.47196 * 301.77257 * 3 2 1 33 33 H 0.96999 * 119.99858 * 180.02562 * 8 7 5 34 34 H 1.08994 * 109.47277 * 301.85851 * 17 15 13 35 35 H 1.09000 * 109.46646 * 61.85701 * 17 15 13 36 36 H 1.09000 * 109.47387 * 181.85726 * 17 15 13 37 37 H 1.08995 * 109.47260 * 64.99656 * 18 15 13 38 38 H 1.09002 * 109.46811 * 304.99450 * 18 15 13 39 39 H 1.08002 * 119.99832 * 359.97438 * 20 19 18 40 40 H 1.08007 * 119.99950 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.46991 * 90.00040 * 23 22 21 42 42 H 1.09000 * 109.46943 * 209.99611 * 23 22 21 43 43 H 1.08997 * 109.47425 * 329.99778 * 23 22 21 44 44 H 1.08005 * 119.99538 * 180.29559 * 24 22 21 45 45 H 1.07994 * 120.00351 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5044 1.4428 -0.0426 5 6 4.2241 1.4786 1.1238 6 1 5.2995 1.5730 1.0921 7 6 3.5699 1.3933 2.3468 8 7 2.3603 0.8837 2.4107 9 14 4.4098 2.0033 3.8998 10 1 4.0854 3.4374 4.1074 11 1 3.9320 1.2142 5.0635 12 1 5.8798 1.8431 3.7631 13 6 4.1441 1.4077 -1.2283 14 8 3.5092 1.4433 -2.2611 15 6 5.6482 1.3245 -1.2709 16 1 6.0059 0.7673 -0.4051 17 6 6.2379 2.7362 -1.2480 18 6 6.0834 0.6108 -2.5522 19 6 7.5780 0.4182 -2.5371 20 6 8.1217 -0.7283 -1.9888 21 6 9.4926 -0.9051 -1.9754 22 6 10.3202 0.0670 -2.5055 23 6 11.8149 -0.1230 -2.4853 24 6 9.7761 1.2110 -3.0590 25 6 8.4052 1.3881 -3.0720 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7028 1.9471 0.9054 32 1 1.6510 1.9654 -0.8736 33 1 1.9035 0.8245 3.2644 34 1 5.8544 3.3040 -2.0956 35 1 5.9551 3.2330 -0.3199 36 1 7.3245 2.6771 -1.3120 37 1 5.8034 1.2129 -3.4166 38 1 5.5926 -0.3607 -2.6116 39 1 7.4754 -1.4859 -1.5708 40 1 9.9174 -1.8008 -1.5466 41 1 12.1291 -0.6297 -3.3978 42 1 12.3039 0.8492 -2.4228 43 1 12.0930 -0.7258 -1.6208 44 1 10.4225 1.9684 -3.4775 45 1 7.9804 2.2835 -3.5010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272242489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:49 Heat of formation + Delta-G solvation = -25.395533 kcal Electronic energy + Delta-G solvation = -23370.211721 eV Core-core repulsion = 20159.099100 eV Total energy + Delta-G solvation = -3211.112621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.55215 -38.59596 -35.53955 -34.46218 -32.40744 -31.75759 -31.15826 -30.75552 -28.01990 -25.87529 -25.21558 -24.45423 -22.57765 -21.95818 -20.58125 -19.91939 -18.88357 -16.75272 -16.41693 -15.57944 -15.30972 -14.87608 -14.41490 -14.35022 -13.88762 -13.79229 -13.58428 -13.35728 -13.17520 -12.94073 -12.55004 -12.32836 -12.16871 -11.99147 -11.74606 -11.63379 -11.34447 -11.30074 -10.92657 -10.84745 -10.80053 -10.64410 -10.50531 -10.42835 -10.34444 -10.24152 -9.96612 -9.51275 -8.78877 -8.74317 -8.34555 -8.13787 -7.74093 -6.33695 -3.84220 1.51068 1.57638 3.09874 3.20990 3.22044 3.86967 3.96691 4.07715 4.78359 4.92774 4.94400 5.04293 5.16989 5.29554 5.30396 5.52006 5.59632 5.67587 5.74546 5.77677 5.85664 5.90787 6.13948 6.14825 6.19737 6.20324 6.31861 6.34700 6.43736 6.44917 6.52954 6.61575 6.71445 6.75602 6.77242 6.81519 6.96377 6.99367 7.06604 7.12029 7.20769 7.36254 7.54504 7.76670 7.86217 8.47386 9.09161 9.58621 9.98944 10.61293 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.004469 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.190110 B = 6263.672596 C = 7184.097631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.116 4.116 3 C 0.136 3.864 4 N -0.440 5.440 5 C -0.330 4.330 6 H 0.102 0.898 7 C 0.034 3.966 8 N -0.857 5.857 9 Si 0.916 3.084 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.456 3.544 14 O -0.613 6.613 15 C -0.088 4.088 16 H 0.088 0.912 17 C -0.138 4.138 18 C -0.062 4.062 19 C -0.070 4.070 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.102 4.102 23 C -0.111 4.111 24 C -0.122 4.122 25 C -0.112 4.112 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.028 0.972 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.034 0.966 33 H 0.267 0.733 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.117 0.883 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.223 -1.142 -4.659 12.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C 0.013 3.987 4 N -0.156 5.156 5 C -0.458 4.458 6 H 0.119 0.881 7 C -0.170 4.170 8 N -0.496 5.496 9 Si 0.742 3.258 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.195 1.195 13 C 0.245 3.755 14 O -0.501 6.501 15 C -0.109 4.109 16 H 0.106 0.894 17 C -0.195 4.195 18 C -0.100 4.100 19 C -0.070 4.070 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.102 4.102 23 C -0.167 4.167 24 C -0.140 4.140 25 C -0.130 4.130 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.742 -1.161 -4.962 11.889 hybrid contribution 0.325 0.202 1.022 1.092 sum 11.067 -0.959 -3.939 11.786 Atomic orbital electron populations 1.21582 0.97703 0.99670 1.00370 1.21773 0.93634 0.98548 1.01525 1.21386 0.79930 0.96802 1.00570 1.43851 1.05726 1.61362 1.04690 1.19748 0.92787 1.50241 0.83018 0.88078 1.25184 0.96305 0.96347 0.99146 1.70151 1.13624 1.39842 1.25947 0.86102 0.79544 0.79017 0.81095 1.20383 1.21022 1.19529 1.19953 0.89073 0.82920 0.83565 1.90506 1.68439 1.57779 1.33349 1.20964 0.94254 0.97618 0.98053 0.89377 1.21728 0.99879 0.95659 1.02281 1.20437 0.89502 1.01466 0.98546 1.20047 0.96216 0.93907 0.96813 1.21106 0.94899 0.97712 0.99376 1.20973 0.93461 0.98760 1.00602 1.19834 0.95675 0.95020 0.99683 1.20741 0.91837 1.02149 1.02002 1.20964 0.95049 0.97382 1.00644 1.21074 0.93138 0.98829 0.99928 0.92959 0.94502 0.94388 0.95315 0.88681 0.88174 0.94744 0.92257 0.92994 0.91885 0.92599 0.90494 0.91179 0.86020 0.86488 0.91616 0.91855 0.91822 0.86544 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.91 37.16 0.37 -2.26 16 2 C -0.12 -2.69 5.73 -26.73 -0.15 -2.85 16 3 C 0.14 3.36 4.62 -4.04 -0.02 3.34 16 4 N -0.44 -11.06 2.63 -114.81 -0.30 -11.36 16 5 C -0.33 -8.17 8.99 -14.93 -0.13 -8.30 16 6 H 0.10 2.39 5.63 -52.49 -0.30 2.10 16 7 C 0.03 0.83 5.06 -17.46 -0.09 0.74 16 8 N -0.86 -21.14 8.12 55.50 0.45 -20.69 16 9 Si 0.92 19.10 29.60 -169.99 -5.03 14.07 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 13 C 0.46 11.05 6.70 -10.99 -0.07 10.98 16 14 O -0.61 -16.33 15.85 5.55 0.09 -16.25 16 15 C -0.09 -1.74 1.87 -91.77 -0.17 -1.91 16 16 H 0.09 1.80 6.51 -51.93 -0.34 1.46 16 17 C -0.14 -2.44 8.69 37.16 0.32 -2.12 16 18 C -0.06 -1.09 4.33 -27.88 -0.12 -1.21 16 19 C -0.07 -1.07 4.71 -104.62 -0.49 -1.56 16 20 C -0.11 -1.63 9.70 -39.59 -0.38 -2.01 16 21 C -0.12 -1.53 9.70 -39.59 -0.38 -1.92 16 22 C -0.10 -1.23 5.88 -104.62 -0.62 -1.85 16 23 C -0.11 -0.99 10.01 36.00 0.36 -0.63 16 24 C -0.12 -1.51 9.70 -39.58 -0.38 -1.90 16 25 C -0.11 -1.54 7.92 -39.58 -0.31 -1.86 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 2.37 6.25 -51.93 -0.32 2.05 16 31 H 0.10 2.56 5.76 -51.93 -0.30 2.26 16 32 H 0.03 0.87 7.44 -51.93 -0.39 0.48 16 33 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.17 7.63 -51.93 -0.40 0.77 16 36 H 0.06 0.87 6.14 -51.93 -0.32 0.55 16 37 H 0.08 1.39 7.96 -51.93 -0.41 0.98 16 38 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 39 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 43 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 44 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 45 H 0.12 1.55 8.03 -52.49 -0.42 1.13 16 LS Contribution 358.00 15.07 5.39 5.39 Total: -1.00 -27.71 358.00 -9.08 -36.79 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.39 Total: 7.36 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.28 Total: -15.32 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.15 Total: -32.05 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.09 Total: -16.25 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.71 -9.08 -36.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272242489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.392 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds