Wall clock time and date at job start Tue Mar 31 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47248 * 2 1 4 4 N 1.46496 * 109.47516 * 181.76552 * 3 2 1 5 5 C 1.37099 * 120.00289 * 267.68770 * 4 3 2 6 6 H 1.07998 * 120.00574 * 185.77945 * 5 4 3 7 7 C 1.38956 * 119.99915 * 5.78651 * 5 4 3 8 8 N 1.31413 * 119.99800 * 20.63216 * 7 5 4 9 9 Si 1.86800 * 120.00008 * 200.63958 * 7 5 4 10 10 H 1.48500 * 109.47083 * 89.99735 * 9 7 5 11 11 H 1.48501 * 109.47111 * 209.99438 * 9 7 5 12 12 H 1.48499 * 109.47231 * 329.99756 * 9 7 5 13 13 C 1.34779 * 120.00074 * 87.68476 * 4 3 2 14 14 O 1.21290 * 119.99521 * 3.67501 * 13 4 3 15 15 C 1.50694 * 120.00117 * 183.66847 * 13 4 3 16 16 H 1.08995 * 109.47390 * 31.46275 * 15 13 4 17 17 C 1.53006 * 109.47289 * 271.46496 * 15 13 4 18 18 C 1.52999 * 109.47220 * 151.46845 * 15 13 4 19 19 C 1.50703 * 109.47298 * 185.00149 * 18 15 13 20 20 C 1.38236 * 120.00233 * 89.99230 * 19 18 15 21 21 C 1.38227 * 119.99923 * 179.97438 * 20 19 18 22 22 C 1.38239 * 120.00345 * 0.26203 * 21 20 19 23 23 C 1.50696 * 119.99987 * 179.72326 * 22 21 20 24 24 C 1.38236 * 119.99405 * 359.46353 * 22 21 20 25 25 C 1.38235 * 119.99522 * 269.97496 * 19 18 15 26 26 H 1.08993 * 109.47240 * 299.99779 * 1 2 3 27 27 H 1.09002 * 109.47134 * 60.00298 * 1 2 3 28 28 H 1.08998 * 109.46769 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47625 * 240.00001 * 2 1 3 30 30 H 1.09002 * 109.47134 * 119.99702 * 2 1 3 31 31 H 1.09002 * 109.47242 * 61.76758 * 3 2 1 32 32 H 1.08997 * 109.47196 * 301.77257 * 3 2 1 33 33 H 0.96999 * 119.99858 * 180.02562 * 8 7 5 34 34 H 1.08994 * 109.47277 * 301.85851 * 17 15 13 35 35 H 1.09000 * 109.46646 * 61.85701 * 17 15 13 36 36 H 1.09000 * 109.47387 * 181.85726 * 17 15 13 37 37 H 1.08995 * 109.47260 * 64.99656 * 18 15 13 38 38 H 1.09002 * 109.46811 * 304.99450 * 18 15 13 39 39 H 1.08002 * 119.99832 * 359.97438 * 20 19 18 40 40 H 1.08007 * 119.99950 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.46991 * 90.00040 * 23 22 21 42 42 H 1.09000 * 109.46943 * 209.99611 * 23 22 21 43 43 H 1.08997 * 109.47425 * 329.99778 * 23 22 21 44 44 H 1.08005 * 119.99538 * 180.29559 * 24 22 21 45 45 H 1.07994 * 120.00351 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5044 1.4428 -0.0426 5 6 4.2241 1.4786 1.1238 6 1 5.2995 1.5730 1.0921 7 6 3.5699 1.3933 2.3468 8 7 2.3603 0.8837 2.4107 9 14 4.4098 2.0033 3.8998 10 1 4.0854 3.4374 4.1074 11 1 3.9320 1.2142 5.0635 12 1 5.8798 1.8431 3.7631 13 6 4.1441 1.4077 -1.2283 14 8 3.5092 1.4433 -2.2611 15 6 5.6482 1.3245 -1.2709 16 1 6.0059 0.7673 -0.4051 17 6 6.2379 2.7362 -1.2480 18 6 6.0834 0.6108 -2.5522 19 6 7.5780 0.4182 -2.5371 20 6 8.1217 -0.7283 -1.9888 21 6 9.4926 -0.9051 -1.9754 22 6 10.3202 0.0670 -2.5055 23 6 11.8149 -0.1230 -2.4853 24 6 9.7761 1.2110 -3.0590 25 6 8.4052 1.3881 -3.0720 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7028 1.9471 0.9054 32 1 1.6510 1.9654 -0.8736 33 1 1.9035 0.8245 3.2644 34 1 5.8544 3.3040 -2.0956 35 1 5.9551 3.2330 -0.3199 36 1 7.3245 2.6771 -1.3120 37 1 5.8034 1.2129 -3.4166 38 1 5.5926 -0.3607 -2.6116 39 1 7.4754 -1.4859 -1.5708 40 1 9.9174 -1.8008 -1.5466 41 1 12.1291 -0.6297 -3.3978 42 1 12.3039 0.8492 -2.4228 43 1 12.0930 -0.7258 -1.6208 44 1 10.4225 1.9684 -3.4775 45 1 7.9804 2.2835 -3.5010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272242489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:48 Heat of formation + Delta-G solvation = -36.720034 kcal Electronic energy + Delta-G solvation = -23370.702788 eV Core-core repulsion = 20159.099100 eV Total energy + Delta-G solvation = -3211.603688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97287 -40.10753 -37.32255 -35.99375 -34.10982 -33.43335 -32.67750 -31.77008 -29.18244 -27.68573 -26.72670 -25.99393 -23.74028 -23.34373 -22.10312 -21.38453 -20.72346 -18.55659 -18.18048 -16.75594 -16.46380 -16.25680 -16.11643 -15.91711 -15.59030 -15.34867 -15.00540 -14.62435 -14.45899 -14.22659 -14.01207 -13.75590 -13.40919 -13.36829 -13.14665 -13.00508 -12.84471 -12.74188 -12.62699 -12.47809 -12.27378 -12.10471 -12.04996 -11.97689 -11.79861 -11.76830 -11.59692 -11.41052 -10.72469 -10.17167 -9.75084 -9.69540 -9.29709 -8.21589 -5.78916 0.46795 0.55696 1.42467 1.49990 1.59066 2.05582 2.31113 2.83654 3.07262 3.15197 3.89544 3.93082 4.11339 4.14590 4.21112 4.24507 4.30872 4.41934 4.49514 4.53859 4.63611 4.68863 4.69561 4.81477 4.88116 4.89655 4.92171 4.95483 4.98354 5.07708 5.10207 5.23583 5.24694 5.28178 5.30431 5.32502 5.37257 5.48393 5.58215 5.60992 5.75639 5.83267 5.83636 5.91704 6.19620 6.54265 7.16998 7.65696 8.06563 8.73799 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.004469 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.190110 B = 6263.672596 C = 7184.097631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 C 0.138 3.862 4 N -0.451 5.451 5 C -0.353 4.353 6 H 0.108 0.892 7 C -0.002 4.002 8 N -0.874 5.874 9 Si 0.982 3.018 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.441 3.559 14 O -0.646 6.646 15 C -0.079 4.079 16 H 0.081 0.919 17 C -0.127 4.127 18 C -0.050 4.050 19 C -0.089 4.089 20 C -0.128 4.128 21 C -0.125 4.125 22 C -0.100 4.100 23 C -0.110 4.110 24 C -0.124 4.124 25 C -0.118 4.118 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.009 0.991 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.021 0.979 33 H 0.270 0.730 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.117 0.883 40 H 0.137 0.863 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.143 0.857 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.609 -0.912 -4.020 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.015 3.985 4 N -0.166 5.166 5 C -0.480 4.480 6 H 0.126 0.874 7 C -0.205 4.205 8 N -0.512 5.512 9 Si 0.807 3.193 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.187 1.187 13 C 0.232 3.768 14 O -0.536 6.536 15 C -0.100 4.100 16 H 0.099 0.901 17 C -0.185 4.185 18 C -0.088 4.088 19 C -0.089 4.089 20 C -0.146 4.146 21 C -0.143 4.143 22 C -0.100 4.100 23 C -0.166 4.166 24 C -0.142 4.142 25 C -0.136 4.136 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.028 0.972 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.135 0.865 40 H 0.155 0.845 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.161 0.839 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.132 -0.937 -4.317 13.855 hybrid contribution -0.416 0.090 0.810 0.915 sum 12.716 -0.846 -3.507 13.218 Atomic orbital electron populations 1.21497 0.94696 1.01297 1.00905 1.21622 0.96269 0.96983 0.99526 1.21343 0.80375 0.97519 0.99289 1.44107 1.05957 1.61194 1.05382 1.20028 0.93294 1.51462 0.83183 0.87398 1.25971 0.97028 0.95851 1.01604 1.70235 1.14561 1.39621 1.26778 0.85082 0.78893 0.78092 0.77245 1.20328 1.20872 1.18718 1.20748 0.90987 0.82247 0.82856 1.90463 1.69609 1.59257 1.34280 1.20902 0.91015 0.99177 0.98889 0.90124 1.21652 1.01244 0.93912 1.01680 1.20242 0.91629 0.99937 0.96966 1.19836 0.94537 0.95359 0.99190 1.21193 0.96005 0.97512 0.99875 1.21240 0.92704 0.99862 1.00512 1.20271 0.97461 0.94271 0.98000 1.20807 0.89400 1.03315 1.03082 1.21291 0.94595 0.98152 1.00120 1.21200 0.93911 0.98672 0.99809 0.92644 0.93677 0.92227 0.97218 0.90454 0.88994 0.96095 0.91977 0.93082 0.92838 0.90093 0.91387 0.92951 0.86536 0.84481 0.90310 0.90562 0.90912 0.83904 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 9.91 71.98 0.71 -4.14 16 2 C -0.11 -5.01 5.73 30.59 0.18 -4.84 16 3 C 0.14 7.03 4.62 86.38 0.40 7.43 16 4 N -0.45 -23.39 2.63 -635.55 -1.67 -25.06 16 5 C -0.35 -17.68 8.99 84.04 0.76 -16.92 16 6 H 0.11 5.14 5.63 -2.91 -0.02 5.13 16 7 C 0.00 -0.10 5.06 84.93 0.43 0.33 16 8 N -0.87 -43.32 8.12 21.67 0.18 -43.14 16 9 Si 0.98 38.69 29.60 68.60 2.03 40.72 16 10 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 12 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 13 C 0.44 22.22 6.70 87.65 0.59 22.81 16 14 O -0.65 -35.93 15.85 -3.06 -0.05 -35.98 16 15 C -0.08 -3.20 1.87 -11.54 -0.02 -3.22 16 16 H 0.08 3.38 6.51 -2.39 -0.02 3.36 16 17 C -0.13 -4.50 8.69 71.98 0.63 -3.87 16 18 C -0.05 -1.82 4.33 29.85 0.13 -1.69 16 19 C -0.09 -2.72 4.71 -19.86 -0.09 -2.81 16 20 C -0.13 -3.65 9.70 22.27 0.22 -3.43 16 21 C -0.13 -2.96 9.70 22.27 0.22 -2.75 16 22 C -0.10 -2.12 5.88 -19.87 -0.12 -2.24 16 23 C -0.11 -1.55 10.01 71.23 0.71 -0.84 16 24 C -0.12 -2.72 9.70 22.27 0.22 -2.50 16 25 C -0.12 -3.09 7.92 22.27 0.18 -2.92 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.08 3.95 6.25 -2.39 -0.01 3.94 16 31 H 0.09 4.82 5.76 -2.39 -0.01 4.81 16 32 H 0.02 1.09 7.44 -2.39 -0.02 1.07 16 33 H 0.27 12.66 8.31 -92.71 -0.77 11.89 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.97 7.63 -2.39 -0.02 1.95 16 36 H 0.08 2.43 6.14 -2.39 -0.01 2.42 16 37 H 0.07 2.55 7.96 -2.39 -0.02 2.54 16 38 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 39 H 0.12 3.32 8.06 -2.91 -0.02 3.30 16 40 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 42 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 43 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 44 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 45 H 0.13 3.10 8.03 -2.91 -0.02 3.07 16 Total: -1.00 -60.39 358.00 6.56 -53.83 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.95 Total: 31.22 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 5.12 Total: -21.60 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -1.49 Total: -68.21 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.05 Total: -35.98 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -60.39 6.56 -53.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272242489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.114 kcal (2) G-P(sol) polarization free energy of solvation -60.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds