Wall clock time and date at job start Tue Mar 31 2020 05:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 C 1.53006 * 109.46846 * 185.00166 * 3 2 1 6 6 C 1.50700 * 109.47318 * 64.99944 * 5 3 2 7 7 O 1.21283 * 119.99679 * 359.97438 * 6 5 3 8 8 N 1.34775 * 119.99937 * 180.02562 * 6 5 3 9 9 C 1.46496 * 119.99911 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47400 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47426 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99621 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99915 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00249 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00026 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46916 * 60.00067 * 15 13 11 17 17 H 1.48506 * 109.47401 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46990 * 300.00032 * 15 13 11 19 19 C 1.50697 * 109.47204 * 65.00067 * 3 2 1 20 20 C 1.38230 * 120.00236 * 59.72651 * 19 3 2 21 21 C 1.38234 * 119.99878 * 179.78673 * 20 19 3 22 22 C 1.38227 * 120.00169 * 0.44097 * 21 20 19 23 23 C 1.50701 * 120.00144 * 179.83510 * 22 21 20 24 24 C 1.38238 * 120.00072 * 359.81287 * 22 21 20 25 25 C 1.38236 * 119.99502 * 239.99702 * 19 3 2 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 31 31 H 1.09004 * 109.46733 * 184.99994 * 5 3 2 32 32 H 1.09000 * 109.46628 * 304.99786 * 5 3 2 33 33 H 0.97000 * 120.00041 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.47268 * 299.99282 * 9 8 6 35 35 H 1.09000 * 109.47416 * 59.99328 * 9 8 6 36 36 H 1.09004 * 109.46519 * 299.99979 * 10 9 8 37 37 H 1.09000 * 109.47191 * 59.99428 * 10 9 8 38 38 H 0.97001 * 120.00630 * 180.02562 * 14 13 11 39 39 H 1.08005 * 119.99973 * 359.97438 * 20 19 3 40 40 H 1.08005 * 119.99920 * 180.27546 * 21 20 19 41 41 H 1.08997 * 109.46961 * 269.97539 * 23 22 21 42 42 H 1.09002 * 109.47390 * 29.97905 * 23 22 21 43 43 H 1.09005 * 109.47121 * 149.97784 * 23 22 21 44 44 H 1.07998 * 120.00150 * 180.02562 * 24 22 21 45 45 H 1.07998 * 120.00811 * 359.97438 * 25 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 6 3.9589 0.8821 -1.4673 7 8 3.1043 0.5156 -2.2459 8 7 5.2611 0.7856 -1.8013 9 6 5.6441 0.2396 -3.1056 10 6 7.1690 0.2412 -3.2314 11 6 7.5631 -0.3210 -4.5729 12 1 6.8020 -0.6473 -5.2662 13 6 8.8951 -0.4188 -4.9150 14 7 9.8218 -0.0210 -4.0708 15 14 9.3836 -1.1164 -6.5775 16 1 8.7965 -0.2818 -7.6564 17 1 10.8636 -1.1136 -6.7001 18 1 8.8792 -2.5079 -6.6980 19 6 1.6413 2.1163 1.2877 20 6 2.0720 1.6049 2.4975 21 6 1.7100 2.2255 3.6784 22 6 0.9097 3.3522 3.6500 23 6 0.5119 4.0266 4.9376 24 6 0.4745 3.8606 2.4403 25 6 0.8402 3.2425 1.2592 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9355 2.4655 -0.0367 32 1 3.9953 0.8311 0.6659 33 1 5.9446 1.0784 -1.1784 34 1 5.2730 -0.7814 -3.1954 35 1 5.2140 0.8534 -3.8970 36 1 7.5397 1.2624 -3.1418 37 1 7.5995 -0.3723 -2.4400 38 1 10.7589 -0.0894 -4.3116 39 1 2.6940 0.7222 2.5200 40 1 2.0502 1.8286 4.6235 41 1 -0.4216 3.5961 5.2999 42 1 1.2938 3.8780 5.6823 43 1 0.3756 5.0938 4.7618 44 1 -0.1504 4.7411 2.4181 45 1 0.5004 3.6398 0.3142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273013729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:55 Heat of formation + Delta-G solvation = -52.909092 kcal Electronic energy + Delta-G solvation = -22099.029217 eV Core-core repulsion = 18886.723519 eV Total energy + Delta-G solvation = -3212.305698 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15892 -39.07328 -36.10792 -34.72741 -32.85006 -32.15693 -31.09065 -30.78608 -29.35035 -27.14074 -25.00238 -23.72557 -23.04871 -21.93027 -21.01962 -20.31378 -19.54606 -17.16558 -16.39348 -15.89580 -15.63270 -15.21981 -15.14798 -14.97295 -14.47589 -14.43221 -13.94843 -13.74486 -13.61040 -13.50927 -13.13279 -12.78404 -12.50707 -12.32729 -12.28162 -12.10572 -11.81578 -11.38098 -11.22417 -11.18384 -11.02537 -10.94458 -10.66840 -10.62459 -10.56871 -10.28379 -9.74486 -9.43149 -9.14658 -9.05944 -8.59528 -8.52358 -8.33556 -6.09512 -4.12490 1.18638 1.26510 3.04088 3.30927 3.34708 3.37640 3.55958 3.76199 4.41311 4.57363 4.60111 4.76191 4.81384 4.88547 5.02405 5.12678 5.23115 5.27331 5.30306 5.31005 5.33831 5.45580 5.50914 5.54245 5.57122 5.74472 5.82751 5.90693 5.97460 6.00161 6.12433 6.24840 6.29706 6.35392 6.35757 6.43052 6.47889 6.59996 6.74756 6.87528 6.96160 7.51577 7.61674 7.88565 8.04479 8.27907 8.69116 8.93413 9.52288 11.02016 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030988 B = 0.002493 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.362640 B =11229.189207 C =11747.710351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.031 4.031 4 H 0.086 0.914 5 C -0.135 4.135 6 C 0.505 3.495 7 O -0.548 6.548 8 N -0.724 5.724 9 C 0.121 3.879 10 C 0.013 3.987 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.072 4.072 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.097 4.097 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.112 4.112 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.397 0.603 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.665 6.650 17.680 25.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.050 4.050 4 H 0.104 0.896 5 C -0.176 4.176 6 C 0.291 3.709 7 O -0.427 6.427 8 N -0.374 5.374 9 C -0.001 4.001 10 C -0.025 4.025 11 C -0.561 4.561 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.072 4.072 20 C -0.129 4.129 21 C -0.137 4.137 22 C -0.097 4.097 23 C -0.170 4.170 24 C -0.138 4.138 25 C -0.130 4.130 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.231 0.769 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.137 0.863 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.064 6.394 17.120 25.696 hybrid contribution 0.823 -0.178 -0.551 1.006 sum -17.241 6.216 16.569 24.707 Atomic orbital electron populations 1.21712 0.96057 1.01150 1.01428 1.21720 0.95951 0.95167 1.03040 1.19954 0.93596 0.97039 0.94420 0.89596 1.21754 0.96943 1.02874 0.95982 1.20557 0.82923 0.78802 0.88666 1.90640 1.49682 1.49710 1.52656 1.46371 1.06818 1.63921 1.20258 1.21698 0.99112 0.97415 0.81856 1.19317 0.87438 0.97840 0.97885 1.21018 0.92037 1.42080 1.00952 0.92322 1.24999 0.96571 0.95371 0.97372 1.69943 1.00513 1.47237 1.35634 0.86570 0.77247 0.79703 0.83997 1.20111 1.21241 1.20101 1.19889 0.97166 0.95285 0.94822 1.21007 1.00137 0.99869 0.91877 1.20999 0.98757 0.95841 0.98101 1.19889 0.98291 0.96280 0.95208 1.20773 1.01582 1.00125 0.94503 1.20996 1.00573 1.00164 0.92019 1.21085 0.98201 0.95587 0.98161 0.93192 0.92788 0.93146 0.89340 0.92641 0.89030 0.89067 0.76943 0.92642 0.92663 0.95989 0.95990 0.92787 0.86063 0.86315 0.91404 0.91677 0.91713 0.86348 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.73 37.16 0.36 -1.24 16 2 C -0.12 -1.46 5.08 -26.73 -0.14 -1.60 16 3 C -0.03 -0.36 1.69 -91.77 -0.15 -0.52 16 4 H 0.09 1.10 7.69 -51.93 -0.40 0.70 16 5 C -0.14 -1.60 4.92 -27.88 -0.14 -1.74 16 6 C 0.50 8.18 7.51 -10.99 -0.08 8.10 16 7 O -0.55 -10.67 13.99 5.55 0.08 -10.60 16 8 N -0.72 -12.42 5.56 -60.30 -0.33 -12.75 16 9 C 0.12 2.58 5.61 -4.05 -0.02 2.56 16 10 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 11 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 15 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.07 -0.75 3.76 -104.63 -0.39 -1.14 16 20 C -0.11 -1.08 8.71 -39.59 -0.34 -1.43 16 21 C -0.12 -1.07 9.70 -39.59 -0.38 -1.46 16 22 C -0.10 -0.85 5.88 -104.63 -0.62 -1.47 16 23 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 24 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 25 C -0.11 -1.12 9.67 -39.58 -0.38 -1.50 16 26 H 0.05 0.53 7.38 -51.93 -0.38 0.14 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.31 5.88 -51.93 -0.31 1.00 16 30 H 0.05 0.61 7.21 -51.93 -0.37 0.23 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.93 7.59 -51.93 -0.39 0.53 16 33 H 0.40 5.91 8.47 -40.82 -0.35 5.56 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.12 1.06 7.13 -52.48 -0.37 0.69 16 40 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 43 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.12 1.09 7.95 -52.49 -0.42 0.67 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -31.16 368.08 -9.46 -40.63 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.60 Total: 2.58 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -2.87 Total: -16.37 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.40 Total: -38.19 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.16 -9.46 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273013729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.283 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds