Wall clock time and date at job start Tue Mar 31 2020 05:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47478 * 2 1 4 4 H 1.08997 * 109.46500 * 54.99900 * 3 2 1 5 5 C 1.52997 * 109.47171 * 295.00035 * 3 2 1 6 6 C 1.53001 * 109.46882 * 174.99869 * 3 2 1 7 7 C 1.50697 * 109.46646 * 185.00272 * 6 3 2 8 8 O 1.21291 * 120.00442 * 359.97438 * 7 6 3 9 9 N 1.34779 * 120.00017 * 180.02562 * 7 6 3 10 10 C 1.46502 * 119.99938 * 4.73184 * 9 7 6 11 11 C 1.50700 * 109.47139 * 270.00351 * 10 9 7 12 12 H 1.08000 * 119.99916 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00272 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00547 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99640 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47038 * 89.99897 * 15 13 11 17 17 H 1.48499 * 109.47028 * 209.99586 * 15 13 11 18 18 H 1.48496 * 109.47300 * 330.00105 * 15 13 11 19 19 C 1.39932 * 120.00300 * 184.73263 * 9 7 6 20 20 C 1.38869 * 120.06903 * 247.87831 * 19 9 7 21 21 C 1.38106 * 119.92510 * 179.72527 * 20 19 9 22 22 C 1.38283 * 120.07354 * 0.22717 * 21 20 19 23 23 C 1.50706 * 119.92878 * 180.02562 * 22 21 20 24 24 C 1.38279 * 120.14292 * 0.04798 * 22 21 20 25 25 C 1.38118 * 120.06469 * 359.95351 * 24 22 21 26 26 H 1.08994 * 109.47133 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46931 * 300.00227 * 1 2 3 28 28 H 1.09003 * 109.46290 * 59.99931 * 1 2 3 29 29 H 1.08998 * 109.46931 * 239.99773 * 2 1 3 30 30 H 1.09003 * 109.47020 * 120.00646 * 2 1 3 31 31 H 1.09001 * 109.47155 * 300.00106 * 5 3 2 32 32 H 1.09002 * 109.47285 * 59.99822 * 5 3 2 33 33 H 1.08994 * 109.46914 * 179.97438 * 5 3 2 34 34 H 1.08991 * 109.47346 * 65.00371 * 6 3 2 35 35 H 1.08999 * 109.47313 * 305.00166 * 6 3 2 36 36 H 1.09001 * 109.47108 * 30.00068 * 10 9 7 37 37 H 1.08994 * 109.47001 * 150.00263 * 10 9 7 38 38 H 0.96997 * 120.00336 * 180.02562 * 14 13 11 39 39 H 1.07995 * 120.03600 * 359.97438 * 20 19 9 40 40 H 1.08003 * 119.96186 * 180.25373 * 21 20 19 41 41 H 1.08995 * 109.46855 * 90.00313 * 23 22 21 42 42 H 1.09005 * 109.46361 * 210.00016 * 23 22 21 43 43 H 1.08998 * 109.47145 * 329.99652 * 23 22 21 44 44 H 1.07994 * 119.97048 * 179.97438 * 24 22 21 45 45 H 1.08005 * 120.03008 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5650 1.4441 0.1258 7 6 4.0572 2.8631 0.2493 8 8 3.2663 3.7826 0.2375 9 7 5.3763 3.1105 0.3720 10 6 6.3395 2.0104 0.2812 11 6 6.5763 1.4355 1.6540 12 1 6.0611 1.8486 2.5086 13 6 7.4505 0.3821 1.8189 14 7 7.6575 -0.1193 3.0169 15 14 8.3409 -0.3328 0.3406 16 1 9.6283 0.3812 0.1453 17 1 8.6053 -1.7756 0.5721 18 1 7.4972 -0.1722 -0.8708 19 6 5.8260 4.4182 0.5861 20 6 6.5504 5.0751 -0.4000 21 6 6.9879 6.3677 -0.1878 22 6 6.7094 7.0062 1.0068 23 6 7.1879 8.4170 1.2346 24 6 5.9933 6.3529 1.9929 25 6 5.5529 5.0601 1.7868 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0700 1.5875 -2.1491 32 1 0.5491 2.1253 -1.3969 33 1 1.9984 3.1542 -1.3071 34 1 4.0031 0.9834 -0.7595 35 1 3.8572 0.8798 1.0113 36 1 5.9442 1.2345 -0.3744 37 1 7.2802 2.3836 -0.1235 38 1 8.2728 -0.8601 3.1330 39 1 6.7679 4.5771 -1.3333 40 1 7.5478 6.8806 -0.9559 41 1 6.4271 9.1184 0.8922 42 1 7.3718 8.5709 2.2980 43 1 8.1108 8.5819 0.6787 44 1 5.7777 6.8541 2.9249 45 1 4.9933 4.5505 2.5573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276865352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:37 Heat of formation + Delta-G solvation = -32.275468 kcal Electronic energy + Delta-G solvation = -23417.041180 eV Core-core repulsion = 20205.630224 eV Total energy + Delta-G solvation = -3211.410957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.03546 -38.42460 -36.20107 -35.13603 -32.79129 -31.65615 -30.57563 -30.31050 -28.11121 -27.55875 -25.73125 -23.78529 -22.84639 -22.00346 -21.28014 -19.74622 -18.56961 -17.10797 -16.76839 -16.06002 -15.36989 -15.06960 -14.83109 -14.40092 -14.23203 -14.11077 -13.59160 -13.53410 -13.29192 -13.06773 -12.80716 -12.52888 -12.22122 -12.10956 -11.99207 -11.70023 -11.61450 -11.59314 -11.36298 -11.03330 -10.98765 -10.80837 -10.68500 -10.47658 -10.37633 -10.26095 -10.24246 -9.68219 -9.11639 -8.75372 -8.53112 -8.46701 -7.61240 -6.24569 -4.26425 1.68695 1.81521 3.15329 3.21955 3.24227 3.26487 3.72135 4.13798 4.23454 5.02378 5.05978 5.12685 5.13563 5.16016 5.17301 5.35881 5.49211 5.54009 5.57910 5.70050 5.76729 5.78573 5.83404 5.88348 5.96134 5.99411 6.04934 6.08972 6.15258 6.17266 6.29514 6.35331 6.38458 6.45140 6.51866 6.58209 6.69057 6.71850 6.77266 6.91687 6.98558 7.15236 7.39117 7.60032 8.02660 8.34228 8.78694 8.89406 9.33945 10.87963 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.009585 B = 0.006632 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.399116 B = 4221.122376 C = 6406.853888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.075 4.075 4 H 0.074 0.926 5 C -0.152 4.152 6 C -0.132 4.132 7 C 0.525 3.475 8 O -0.553 6.553 9 N -0.559 5.559 10 C 0.210 3.790 11 C -0.540 4.540 12 H 0.079 0.921 13 C 0.078 3.922 14 N -0.889 5.889 15 Si 0.870 3.130 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.264 1.264 19 C 0.170 3.830 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.104 4.104 23 C -0.108 4.108 24 C -0.111 4.111 25 C -0.098 4.098 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.039 0.961 37 H 0.030 0.970 38 H 0.267 0.733 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.119 0.881 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 6.869 -6.903 11.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.094 4.094 4 H 0.093 0.907 5 C -0.209 4.209 6 C -0.172 4.172 7 C 0.315 3.685 8 O -0.432 6.432 9 N -0.286 5.286 10 C 0.090 3.910 11 C -0.578 4.578 12 H 0.097 0.903 13 C -0.126 4.126 14 N -0.526 5.526 15 Si 0.696 3.304 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.188 1.188 19 C 0.079 3.921 20 C -0.144 4.144 21 C -0.133 4.133 22 C -0.104 4.104 23 C -0.165 4.165 24 C -0.130 4.130 25 C -0.118 4.118 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.891 7.149 -6.816 11.501 hybrid contribution 0.838 -0.737 -0.545 1.242 sum -5.053 6.412 -7.361 10.992 Atomic orbital electron populations 1.21799 0.96187 1.01032 1.01783 1.21595 0.95591 0.96549 1.02148 1.20912 0.93671 0.95527 0.99279 0.90708 1.21983 1.00459 1.02210 0.96217 1.21747 0.96027 0.94210 1.05212 1.20683 0.81147 0.91610 0.75066 1.90596 1.54461 1.46922 1.51234 1.45670 1.06947 1.05988 1.70012 1.19925 0.87851 0.84431 0.98762 1.21305 1.27059 1.16731 0.92711 0.90302 1.24839 0.95935 0.96099 0.95676 1.69878 1.35871 1.25312 1.21552 0.86951 0.80925 0.79039 0.83489 1.19881 1.20754 1.18837 1.17546 0.96436 0.85197 0.92947 1.21149 0.99985 0.94779 0.98464 1.20747 1.01078 0.94477 0.96965 1.19803 0.99574 0.96451 0.94597 1.20718 1.00728 0.92949 1.02063 1.20828 0.98885 0.94462 0.98832 1.21235 0.99539 0.94908 0.96083 0.93182 0.92861 0.92687 0.92132 0.91688 0.93728 0.93242 0.90824 0.89450 0.87310 0.94314 0.95156 0.92307 0.86264 0.86325 0.91668 0.91833 0.91915 0.86270 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 37.16 0.36 -1.34 16 2 C -0.12 -1.58 5.40 -26.73 -0.14 -1.72 16 3 C -0.07 -1.14 2.04 -90.62 -0.18 -1.33 16 4 H 0.07 1.24 7.96 -51.93 -0.41 0.82 16 5 C -0.15 -2.21 8.69 37.16 0.32 -1.89 16 6 C -0.13 -2.33 3.84 -27.88 -0.11 -2.43 16 7 C 0.52 10.68 7.24 -10.99 -0.08 10.60 16 8 O -0.55 -12.05 13.73 5.55 0.08 -11.98 16 9 N -0.56 -11.79 2.51 -114.74 -0.29 -12.08 16 10 C 0.21 4.68 3.95 -5.19 -0.02 4.66 16 11 C -0.54 -14.14 9.71 -34.44 -0.33 -14.48 16 12 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 13 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 14 N -0.89 -25.62 13.96 55.43 0.77 -24.84 16 15 Si 0.87 19.68 27.47 -169.99 -4.67 15.01 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 19 C 0.17 3.44 4.74 -83.69 -0.40 3.05 16 20 C -0.12 -2.21 9.69 -39.40 -0.38 -2.59 16 21 C -0.11 -1.75 9.69 -39.61 -0.38 -2.13 16 22 C -0.10 -1.55 5.88 -104.59 -0.62 -2.17 16 23 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 24 C -0.11 -1.83 9.69 -39.61 -0.38 -2.21 16 25 C -0.10 -1.91 9.56 -39.39 -0.38 -2.29 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 33 H 0.07 1.25 5.95 -51.93 -0.31 0.94 16 34 H 0.09 1.44 7.26 -51.93 -0.38 1.06 16 35 H 0.11 2.06 7.91 -51.93 -0.41 1.64 16 36 H 0.04 0.82 5.53 -51.93 -0.29 0.54 16 37 H 0.03 0.67 7.29 -51.93 -0.38 0.29 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 40 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 43 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 44 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 45 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -29.59 362.34 -8.63 -38.22 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.51 Total: 5.30 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -2.46 Total: -15.09 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.49 Total: -36.92 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.59 -8.63 -38.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276865352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.943 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds