Wall clock time and date at job start Tue Mar 31 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47478 * 2 1 4 4 H 1.08997 * 109.46500 * 54.99900 * 3 2 1 5 5 C 1.52997 * 109.47171 * 295.00035 * 3 2 1 6 6 C 1.53001 * 109.46882 * 174.99869 * 3 2 1 7 7 C 1.50697 * 109.46646 * 185.00272 * 6 3 2 8 8 O 1.21291 * 120.00442 * 359.97438 * 7 6 3 9 9 N 1.34779 * 120.00017 * 180.02562 * 7 6 3 10 10 C 1.46502 * 119.99938 * 4.73184 * 9 7 6 11 11 C 1.50700 * 109.47139 * 270.00351 * 10 9 7 12 12 H 1.08000 * 119.99916 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00272 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00547 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99640 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47038 * 89.99897 * 15 13 11 17 17 H 1.48499 * 109.47028 * 209.99586 * 15 13 11 18 18 H 1.48496 * 109.47300 * 330.00105 * 15 13 11 19 19 C 1.39932 * 120.00300 * 184.73263 * 9 7 6 20 20 C 1.38869 * 120.06903 * 247.87831 * 19 9 7 21 21 C 1.38106 * 119.92510 * 179.72527 * 20 19 9 22 22 C 1.38283 * 120.07354 * 0.22717 * 21 20 19 23 23 C 1.50706 * 119.92878 * 180.02562 * 22 21 20 24 24 C 1.38279 * 120.14292 * 0.04798 * 22 21 20 25 25 C 1.38118 * 120.06469 * 359.95351 * 24 22 21 26 26 H 1.08994 * 109.47133 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46931 * 300.00227 * 1 2 3 28 28 H 1.09003 * 109.46290 * 59.99931 * 1 2 3 29 29 H 1.08998 * 109.46931 * 239.99773 * 2 1 3 30 30 H 1.09003 * 109.47020 * 120.00646 * 2 1 3 31 31 H 1.09001 * 109.47155 * 300.00106 * 5 3 2 32 32 H 1.09002 * 109.47285 * 59.99822 * 5 3 2 33 33 H 1.08994 * 109.46914 * 179.97438 * 5 3 2 34 34 H 1.08991 * 109.47346 * 65.00371 * 6 3 2 35 35 H 1.08999 * 109.47313 * 305.00166 * 6 3 2 36 36 H 1.09001 * 109.47108 * 30.00068 * 10 9 7 37 37 H 1.08994 * 109.47001 * 150.00263 * 10 9 7 38 38 H 0.96997 * 120.00336 * 180.02562 * 14 13 11 39 39 H 1.07995 * 120.03600 * 359.97438 * 20 19 9 40 40 H 1.08003 * 119.96186 * 180.25373 * 21 20 19 41 41 H 1.08995 * 109.46855 * 90.00313 * 23 22 21 42 42 H 1.09005 * 109.46361 * 210.00016 * 23 22 21 43 43 H 1.08998 * 109.47145 * 329.99652 * 23 22 21 44 44 H 1.07994 * 119.97048 * 179.97438 * 24 22 21 45 45 H 1.08005 * 120.03008 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5650 1.4441 0.1258 7 6 4.0572 2.8631 0.2493 8 8 3.2663 3.7826 0.2375 9 7 5.3763 3.1105 0.3720 10 6 6.3395 2.0104 0.2812 11 6 6.5763 1.4355 1.6540 12 1 6.0611 1.8486 2.5086 13 6 7.4505 0.3821 1.8189 14 7 7.6575 -0.1193 3.0169 15 14 8.3409 -0.3328 0.3406 16 1 9.6283 0.3812 0.1453 17 1 8.6053 -1.7756 0.5721 18 1 7.4972 -0.1722 -0.8708 19 6 5.8260 4.4182 0.5861 20 6 6.5504 5.0751 -0.4000 21 6 6.9879 6.3677 -0.1878 22 6 6.7094 7.0062 1.0068 23 6 7.1879 8.4170 1.2346 24 6 5.9933 6.3529 1.9929 25 6 5.5529 5.0601 1.7868 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0700 1.5875 -2.1491 32 1 0.5491 2.1253 -1.3969 33 1 1.9984 3.1542 -1.3071 34 1 4.0031 0.9834 -0.7595 35 1 3.8572 0.8798 1.0113 36 1 5.9442 1.2345 -0.3744 37 1 7.2802 2.3836 -0.1235 38 1 8.2728 -0.8601 3.1330 39 1 6.7679 4.5771 -1.3333 40 1 7.5478 6.8806 -0.9559 41 1 6.4271 9.1184 0.8922 42 1 7.3718 8.5709 2.2980 43 1 8.1108 8.5819 0.6787 44 1 5.7777 6.8541 2.9249 45 1 4.9933 4.5505 2.5573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276865352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:36 Heat of formation + Delta-G solvation = -46.806253 kcal Electronic energy + Delta-G solvation = -23417.671283 eV Core-core repulsion = 20205.630224 eV Total energy + Delta-G solvation = -3212.041059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.55791 -39.79000 -37.48110 -36.73430 -34.70279 -33.05322 -31.90493 -31.45943 -29.93138 -28.82906 -26.96921 -25.01125 -24.51641 -23.49861 -22.56404 -20.97652 -20.06586 -19.12361 -18.31337 -17.69701 -16.86600 -16.38256 -16.16436 -15.97286 -15.67880 -15.43618 -14.88016 -14.74429 -14.55698 -14.38585 -14.34107 -13.95969 -13.82197 -13.50392 -13.17350 -13.02500 -12.78557 -12.76932 -12.73884 -12.53962 -12.38905 -12.18856 -12.11037 -11.93252 -11.73419 -11.71119 -11.51109 -11.39091 -10.84107 -10.66989 -9.98391 -9.87887 -9.10905 -8.32256 -6.40317 0.33779 0.46594 1.38491 1.38706 1.48851 1.65652 2.18200 2.32067 2.78924 3.01443 3.70191 3.87644 3.93118 3.99462 4.03866 4.07093 4.27928 4.42226 4.44818 4.48542 4.52476 4.59271 4.67967 4.73986 4.77920 4.80942 4.83801 4.87136 4.90870 4.97833 5.12209 5.13104 5.16946 5.17602 5.24148 5.31886 5.36811 5.38828 5.51501 5.57983 5.61091 5.66188 5.77203 6.09013 6.21053 6.51144 6.63935 7.20338 7.31172 8.84133 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.009585 B = 0.006632 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.399116 B = 4221.122376 C = 6406.853888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.071 4.071 4 H 0.053 0.947 5 C -0.144 4.144 6 C -0.128 4.128 7 C 0.516 3.484 8 O -0.572 6.572 9 N -0.563 5.563 10 C 0.220 3.780 11 C -0.540 4.540 12 H 0.026 0.974 13 C 0.021 3.979 14 N -0.941 5.941 15 Si 0.940 3.060 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.233 1.233 19 C 0.128 3.872 20 C -0.134 4.134 21 C -0.109 4.109 22 C -0.098 4.098 23 C -0.105 4.105 24 C -0.117 4.117 25 C -0.129 4.129 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.269 0.731 39 H 0.132 0.868 40 H 0.158 0.842 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.140 0.860 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.855 7.698 -9.858 13.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.090 4.090 4 H 0.072 0.928 5 C -0.201 4.201 6 C -0.167 4.167 7 C 0.308 3.692 8 O -0.453 6.453 9 N -0.290 5.290 10 C 0.099 3.901 11 C -0.578 4.578 12 H 0.045 0.955 13 C -0.178 4.178 14 N -0.580 5.580 15 Si 0.762 3.238 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.156 1.156 19 C 0.038 3.962 20 C -0.153 4.153 21 C -0.127 4.127 22 C -0.098 4.098 23 C -0.162 4.162 24 C -0.135 4.135 25 C -0.149 4.149 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.150 0.850 40 H 0.175 0.825 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.158 0.842 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.180 8.004 -9.776 13.655 hybrid contribution 0.591 -0.849 0.501 1.149 sum -4.589 7.155 -9.276 12.581 Atomic orbital electron populations 1.21781 0.94596 1.02169 1.01974 1.21569 0.96962 0.94588 1.02410 1.20890 0.91821 0.97174 0.99103 0.92843 1.21894 1.01670 1.00512 0.96046 1.21775 0.97885 0.92178 1.04880 1.21204 0.80932 0.92543 0.74546 1.90569 1.54739 1.47829 1.52138 1.45686 1.06989 1.06342 1.69948 1.19743 0.88720 0.85202 0.96398 1.21404 1.26414 1.16742 0.93255 0.95542 1.25775 0.96723 0.96360 0.98954 1.70045 1.37201 1.26317 1.24440 0.85831 0.79846 0.77891 0.80246 1.19264 1.20613 1.15556 1.17928 0.98690 0.85363 0.94230 1.21388 0.99654 0.95961 0.98297 1.21225 1.00096 0.93486 0.97907 1.20322 0.97625 0.98214 0.93630 1.20802 1.01946 0.90148 1.03271 1.21125 0.98699 0.93320 1.00402 1.21245 1.01145 0.96676 0.95850 0.91580 0.93373 0.91823 0.90768 0.92530 0.92176 0.91412 0.93542 0.87703 0.89350 0.92424 0.94269 0.92178 0.85020 0.82477 0.90001 0.90854 0.89917 0.84234 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.67 71.98 0.70 -2.40 16 2 C -0.12 -2.95 5.40 30.60 0.17 -2.78 16 3 C -0.07 -2.18 2.04 -10.79 -0.02 -2.20 16 4 H 0.05 1.85 7.96 -2.39 -0.02 1.83 16 5 C -0.14 -4.07 8.69 71.98 0.63 -3.45 16 6 C -0.13 -4.59 3.84 29.85 0.11 -4.48 16 7 C 0.52 21.90 7.24 87.66 0.64 22.54 16 8 O -0.57 -26.15 13.73 -3.06 -0.04 -26.19 16 9 N -0.56 -24.56 2.51 -635.30 -1.59 -26.16 16 10 C 0.22 9.85 3.95 85.63 0.34 10.19 16 11 C -0.54 -29.51 9.71 25.60 0.25 -29.26 16 12 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 13 C 0.02 1.15 5.47 84.66 0.46 1.61 16 14 N -0.94 -56.31 13.96 21.45 0.30 -56.01 16 15 Si 0.94 40.00 27.47 68.60 1.88 41.88 16 16 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 18 H -0.23 -8.68 6.54 99.48 0.65 -8.03 16 19 C 0.13 5.37 4.74 38.15 0.18 5.55 16 20 C -0.13 -4.63 9.69 22.39 0.22 -4.41 16 21 C -0.11 -3.05 9.69 22.25 0.22 -2.84 16 22 C -0.10 -2.70 5.88 -19.84 -0.12 -2.81 16 23 C -0.11 -1.92 10.01 71.24 0.71 -1.20 16 24 C -0.12 -3.84 9.69 22.25 0.22 -3.63 16 25 C -0.13 -5.36 9.56 22.39 0.21 -5.15 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.22 6.56 -2.39 -0.02 1.20 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.64 6.57 -2.39 -0.02 1.63 16 33 H 0.05 1.58 5.95 -2.39 -0.01 1.56 16 34 H 0.10 3.35 7.26 -2.39 -0.02 3.33 16 35 H 0.09 3.54 7.91 -2.39 -0.02 3.52 16 36 H 0.06 2.36 5.53 -2.39 -0.01 2.35 16 37 H 0.04 1.70 7.29 -2.39 -0.02 1.68 16 38 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 40 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.22 8.08 -2.38 -0.02 1.20 16 43 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 44 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 45 H 0.09 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -68.54 362.34 6.34 -62.20 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.89 Total: 29.00 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 4.90 Total: -24.72 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -1.29 Total: -82.17 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.04 Total: -26.19 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.88 Total: 41.88 kcal Total: -68.54 6.34 -62.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276865352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.392 kcal (2) G-P(sol) polarization free energy of solvation -68.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds