Wall clock time and date at job start Tue Mar 31 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47047 * 112.98471 * 3 2 1 5 5 C 1.37100 * 119.99806 * 95.97927 * 4 3 2 6 6 H 1.08001 * 119.99392 * 159.64648 * 5 4 3 7 7 C 1.38945 * 120.00236 * 339.64430 * 5 4 3 8 8 N 1.31409 * 119.99924 * 348.96730 * 7 5 4 9 9 Si 1.86793 * 120.00103 * 168.96931 * 7 5 4 10 10 H 1.48501 * 109.47080 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47194 * 119.99963 * 9 7 5 12 12 H 1.48493 * 109.47444 * 239.99964 * 9 7 5 13 13 C 1.34777 * 119.99595 * 275.98040 * 4 3 2 14 14 O 1.21296 * 119.99161 * 186.16678 * 13 4 3 15 15 C 1.50691 * 120.00419 * 6.16563 * 13 4 3 16 16 H 1.08996 * 109.47475 * 32.06912 * 15 13 4 17 17 C 1.53001 * 109.47090 * 272.06893 * 15 13 4 18 18 C 1.53007 * 109.47139 * 179.97438 * 17 15 13 19 19 C 1.53004 * 109.46602 * 60.00312 * 18 17 15 20 20 H 1.09003 * 109.47171 * 60.00268 * 19 18 17 21 21 C 1.53007 * 109.46602 * 180.02562 * 19 18 17 22 22 C 1.52992 * 109.47406 * 60.00208 * 21 19 18 23 23 C 1.53001 * 109.47397 * 59.99637 * 22 21 19 24 24 C 1.53004 * 109.46983 * 300.00002 * 23 22 21 25 25 C 1.53001 * 109.47119 * 299.99700 * 19 18 17 26 26 H 1.09003 * 109.46625 * 180.02562 * 25 19 18 27 27 C 1.52994 * 109.47072 * 60.00466 * 25 19 18 28 28 H 4.40641 * 5.51484 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.46895 * 352.98096 * 3 2 1 30 30 H 1.09000 * 109.46851 * 232.98587 * 3 2 1 31 31 H 0.97000 * 120.00285 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47316 * 60.00326 * 17 15 13 33 33 H 1.09003 * 109.47563 * 300.00014 * 17 15 13 34 34 H 1.08994 * 109.47423 * 300.00654 * 18 17 15 35 35 H 1.09002 * 109.46839 * 179.97438 * 18 17 15 36 36 H 1.09002 * 109.46839 * 299.99361 * 21 19 18 37 37 H 1.09003 * 109.46524 * 180.02562 * 21 19 18 38 38 H 1.09008 * 109.46889 * 299.99736 * 22 21 19 39 39 H 1.08998 * 109.47198 * 179.97438 * 22 21 19 40 40 H 1.08991 * 109.46921 * 60.00144 * 23 22 21 41 41 H 1.08999 * 109.46997 * 180.02562 * 23 22 21 42 42 H 1.09007 * 109.46752 * 179.97438 * 24 23 22 43 43 H 1.08991 * 109.47408 * 299.99844 * 24 23 22 44 44 H 1.08995 * 109.47221 * 179.97438 * 27 25 19 45 45 H 1.09004 * 109.47300 * 60.00018 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5402 -1.2716 5 6 3.4786 1.8638 -1.3675 6 1 4.1295 2.1960 -2.1627 7 6 2.9903 2.7776 -0.4417 8 7 2.0353 2.4247 0.3892 9 14 3.6913 4.5078 -0.3781 10 1 4.7481 4.6520 -1.4114 11 1 2.6085 5.4905 -0.6378 12 1 4.2741 4.7569 0.9648 13 6 3.2444 -0.2646 -2.3470 14 8 3.7523 0.1522 -3.3667 15 6 2.7368 -1.6820 -2.2828 16 1 1.8738 -1.7291 -1.6186 17 6 3.8418 -2.5956 -1.7488 18 6 3.3262 -4.0347 -1.6829 19 6 2.9169 -4.4943 -3.0838 20 1 3.7798 -4.4476 -3.7481 21 6 2.4007 -5.9332 -3.0178 22 6 1.1894 -5.9983 -2.0855 23 6 0.0849 -5.0842 -2.6197 24 6 0.6011 -3.6454 -2.6855 25 6 1.8119 -3.5806 -3.6177 26 1 1.5201 -3.9084 -4.6155 27 6 2.3275 -2.1417 -3.6835 28 1 -1.0501 0.0001 0.0002 29 1 3.0097 -1.0191 0.1256 30 1 3.0090 0.6195 0.8206 31 1 1.6942 3.0627 1.0352 32 1 4.1331 -2.2685 -0.7507 33 1 4.7048 -2.5486 -2.4129 34 1 2.4633 -4.0815 -1.0187 35 1 4.1136 -4.6857 -1.3030 36 1 3.1877 -6.5844 -2.6372 37 1 2.1096 -6.2608 -4.0158 38 1 1.4811 -5.6708 -1.0875 39 1 0.8215 -7.0232 -2.0389 40 1 -0.2067 -5.4117 -3.6176 41 1 -0.7779 -5.1303 -1.9552 42 1 -0.1858 -2.9942 -3.0666 43 1 0.8926 -3.3179 -1.6877 44 1 1.5405 -1.4908 -4.0643 45 1 3.1903 -2.0948 -4.3479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281502600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:38 Heat of formation + Delta-G solvation = -2.651480 kcal Electronic energy + Delta-G solvation = -24543.100374 eV Core-core repulsion = 21332.974010 eV Total energy + Delta-G solvation = -3210.126364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.35255 -38.37416 -35.26180 -34.47000 -32.09221 -31.98160 -31.15122 -29.99367 -28.43996 -26.41652 -24.94071 -23.48561 -22.19894 -22.05912 -20.72321 -18.96110 -17.82741 -17.57528 -16.66574 -16.15873 -15.41392 -15.04150 -14.63235 -14.40939 -14.03746 -13.85706 -13.75035 -13.35471 -13.02612 -12.62106 -12.43233 -12.25455 -12.12616 -11.89559 -11.80450 -11.59927 -11.41875 -11.18652 -11.04771 -11.01322 -10.79379 -10.45071 -10.40661 -10.28914 -10.11755 -9.78354 -9.60877 -9.58809 -9.34799 -9.20852 -8.78930 -8.26223 -7.78474 -6.25409 -3.85658 3.16204 3.26952 3.33475 3.74907 3.94789 4.10485 4.21464 4.69158 4.73735 4.78469 5.01371 5.08548 5.17633 5.26427 5.33459 5.36849 5.49381 5.56719 5.58957 5.61990 5.68798 5.75418 5.81717 5.84041 5.92924 5.94597 6.02905 6.10091 6.15054 6.20241 6.26641 6.29192 6.37143 6.44772 6.50132 6.53505 6.55795 6.67675 6.78821 6.87721 6.89348 7.10819 7.59000 8.12539 8.48885 8.85496 9.18960 9.41664 9.97373 10.74064 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.004820 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.220988 B = 5807.207657 C = 6261.227270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.104 4.104 3 C 0.231 3.769 4 N -0.445 5.445 5 C -0.307 4.307 6 H 0.102 0.898 7 C 0.027 3.973 8 N -0.875 5.875 9 Si 0.925 3.075 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.461 3.539 14 O -0.585 6.585 15 C -0.101 4.101 16 H 0.086 0.914 17 C -0.108 4.108 18 C -0.113 4.113 19 C -0.081 4.081 20 H 0.068 0.932 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.078 4.078 26 H 0.065 0.935 27 C -0.091 4.091 28 H 0.197 0.803 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.267 0.733 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 -15.108 -0.704 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.105 4.105 3 C 0.108 3.892 4 N -0.164 5.164 5 C -0.435 4.435 6 H 0.120 0.880 7 C -0.175 4.175 8 N -0.515 5.515 9 Si 0.752 3.248 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.207 1.207 13 C 0.249 3.751 14 O -0.468 6.468 15 C -0.122 4.122 16 H 0.104 0.896 17 C -0.146 4.146 18 C -0.151 4.151 19 C -0.100 4.100 20 H 0.086 0.914 21 C -0.150 4.150 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.097 4.097 26 H 0.084 0.916 27 C -0.129 4.129 28 H 0.214 0.786 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.929 -14.764 -1.050 14.927 hybrid contribution -0.212 1.099 0.260 1.149 sum -2.141 -13.665 -0.790 13.854 Atomic orbital electron populations 1.24237 0.95347 1.06692 1.02758 1.23233 0.94371 0.94977 0.97945 1.18409 0.84150 0.96742 0.89925 1.43680 1.56434 1.09039 1.07229 1.19739 1.27580 0.82049 1.14144 0.88036 1.25312 0.95398 0.99836 0.96970 1.69985 1.24626 1.35588 1.21275 0.85876 0.78867 0.81974 0.78083 1.19323 1.20903 1.20715 1.20188 0.83907 0.87534 0.83428 1.90498 1.48252 1.76945 1.31142 1.21259 0.99059 0.93416 0.98510 0.89610 1.21505 0.97951 0.94022 1.01136 1.21668 1.00671 0.95915 0.96819 1.21126 0.97789 0.93908 0.97160 0.91358 1.21551 0.97410 0.96544 0.99515 1.21569 0.95724 0.98892 0.99649 1.21520 0.97617 0.95616 1.00722 1.21684 0.97279 0.95915 1.00804 1.21115 0.94812 0.95223 0.98531 0.91631 1.21310 1.01144 0.94352 0.96061 0.78566 0.92375 0.86627 0.92279 0.91802 0.91684 0.91345 0.92330 0.92362 0.92347 0.91627 0.92704 0.92472 0.92422 0.92191 0.91052 0.92184 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.63 19.25 29.55 0.57 -5.06 16 2 C -0.10 -2.32 10.19 -37.12 -0.38 -2.70 16 3 C 0.23 5.16 4.80 -6.83 -0.03 5.13 16 4 N -0.45 -11.31 2.60 -117.93 -0.31 -11.61 16 5 C -0.31 -8.52 9.37 -14.93 -0.14 -8.66 16 6 H 0.10 2.97 7.33 -52.49 -0.38 2.59 16 7 C 0.03 0.72 5.11 -17.47 -0.09 0.63 16 8 N -0.88 -23.03 9.02 55.50 0.50 -22.53 16 9 Si 0.92 20.82 29.57 -169.99 -5.03 15.79 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.46 11.21 6.63 -10.99 -0.07 11.13 16 14 O -0.58 -16.23 15.81 5.54 0.09 -16.14 16 15 C -0.10 -1.88 1.42 -91.77 -0.13 -2.01 16 16 H 0.09 1.60 4.33 -51.93 -0.22 1.37 16 17 C -0.11 -1.71 5.01 -26.73 -0.13 -1.84 16 18 C -0.11 -1.42 4.59 -26.73 -0.12 -1.55 16 19 C -0.08 -0.98 2.47 -90.61 -0.22 -1.20 16 20 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.11 -1.13 5.45 -26.73 -0.15 -1.28 16 22 C -0.12 -1.19 5.65 -26.73 -0.15 -1.34 16 23 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 24 C -0.12 -1.53 4.58 -26.76 -0.12 -1.65 16 25 C -0.08 -1.04 2.46 -90.65 -0.22 -1.26 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 C -0.09 -1.55 4.30 -26.73 -0.11 -1.67 16 28 H 0.20 3.34 7.80 -54.09 -0.42 2.92 16 29 H 0.06 1.11 5.52 -51.93 -0.29 0.82 16 30 H 0.12 2.76 6.31 -51.93 -0.33 2.43 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.06 1.00 6.55 -51.93 -0.34 0.66 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.85 4.81 -51.93 -0.25 0.60 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.67 6.43 -51.92 -0.33 0.33 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.99 4.81 -51.93 -0.25 0.74 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.07 1.27 7.86 -51.93 -0.41 0.86 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -30.14 335.13 -8.38 -38.52 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.01 Total: 5.64 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -1.67 Total: -14.72 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.19 Total: -34.14 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.09 Total: -16.14 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.14 -8.38 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281502600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.867 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds