Wall clock time and date at job start Tue Mar 31 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47047 * 112.98471 * 3 2 1 5 5 C 1.37100 * 119.99806 * 95.97927 * 4 3 2 6 6 H 1.08001 * 119.99392 * 159.64648 * 5 4 3 7 7 C 1.38945 * 120.00236 * 339.64430 * 5 4 3 8 8 N 1.31409 * 119.99924 * 348.96730 * 7 5 4 9 9 Si 1.86793 * 120.00103 * 168.96931 * 7 5 4 10 10 H 1.48501 * 109.47080 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47194 * 119.99963 * 9 7 5 12 12 H 1.48493 * 109.47444 * 239.99964 * 9 7 5 13 13 C 1.34777 * 119.99595 * 275.98040 * 4 3 2 14 14 O 1.21296 * 119.99161 * 186.16678 * 13 4 3 15 15 C 1.50691 * 120.00419 * 6.16563 * 13 4 3 16 16 H 1.08996 * 109.47475 * 32.06912 * 15 13 4 17 17 C 1.53001 * 109.47090 * 272.06893 * 15 13 4 18 18 C 1.53007 * 109.47139 * 179.97438 * 17 15 13 19 19 C 1.53004 * 109.46602 * 60.00312 * 18 17 15 20 20 H 1.09003 * 109.47171 * 60.00268 * 19 18 17 21 21 C 1.53007 * 109.46602 * 180.02562 * 19 18 17 22 22 C 1.52992 * 109.47406 * 60.00208 * 21 19 18 23 23 C 1.53001 * 109.47397 * 59.99637 * 22 21 19 24 24 C 1.53004 * 109.46983 * 300.00002 * 23 22 21 25 25 C 1.53001 * 109.47119 * 299.99700 * 19 18 17 26 26 H 1.09003 * 109.46625 * 180.02562 * 25 19 18 27 27 C 1.52994 * 109.47072 * 60.00466 * 25 19 18 28 28 H 4.40641 * 5.51484 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.46895 * 352.98096 * 3 2 1 30 30 H 1.09000 * 109.46851 * 232.98587 * 3 2 1 31 31 H 0.97000 * 120.00285 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47316 * 60.00326 * 17 15 13 33 33 H 1.09003 * 109.47563 * 300.00014 * 17 15 13 34 34 H 1.08994 * 109.47423 * 300.00654 * 18 17 15 35 35 H 1.09002 * 109.46839 * 179.97438 * 18 17 15 36 36 H 1.09002 * 109.46839 * 299.99361 * 21 19 18 37 37 H 1.09003 * 109.46524 * 180.02562 * 21 19 18 38 38 H 1.09008 * 109.46889 * 299.99736 * 22 21 19 39 39 H 1.08998 * 109.47198 * 179.97438 * 22 21 19 40 40 H 1.08991 * 109.46921 * 60.00144 * 23 22 21 41 41 H 1.08999 * 109.46997 * 180.02562 * 23 22 21 42 42 H 1.09007 * 109.46752 * 179.97438 * 24 23 22 43 43 H 1.08991 * 109.47408 * 299.99844 * 24 23 22 44 44 H 1.08995 * 109.47221 * 179.97438 * 27 25 19 45 45 H 1.09004 * 109.47300 * 60.00018 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5402 -1.2716 5 6 3.4786 1.8638 -1.3675 6 1 4.1295 2.1960 -2.1627 7 6 2.9903 2.7776 -0.4417 8 7 2.0353 2.4247 0.3892 9 14 3.6913 4.5078 -0.3781 10 1 4.7481 4.6520 -1.4114 11 1 2.6085 5.4905 -0.6378 12 1 4.2741 4.7569 0.9648 13 6 3.2444 -0.2646 -2.3470 14 8 3.7523 0.1522 -3.3667 15 6 2.7368 -1.6820 -2.2828 16 1 1.8738 -1.7291 -1.6186 17 6 3.8418 -2.5956 -1.7488 18 6 3.3262 -4.0347 -1.6829 19 6 2.9169 -4.4943 -3.0838 20 1 3.7798 -4.4476 -3.7481 21 6 2.4007 -5.9332 -3.0178 22 6 1.1894 -5.9983 -2.0855 23 6 0.0849 -5.0842 -2.6197 24 6 0.6011 -3.6454 -2.6855 25 6 1.8119 -3.5806 -3.6177 26 1 1.5201 -3.9084 -4.6155 27 6 2.3275 -2.1417 -3.6835 28 1 -1.0501 0.0001 0.0002 29 1 3.0097 -1.0191 0.1256 30 1 3.0090 0.6195 0.8206 31 1 1.6942 3.0627 1.0352 32 1 4.1331 -2.2685 -0.7507 33 1 4.7048 -2.5486 -2.4129 34 1 2.4633 -4.0815 -1.0187 35 1 4.1136 -4.6857 -1.3030 36 1 3.1877 -6.5844 -2.6372 37 1 2.1096 -6.2608 -4.0158 38 1 1.4811 -5.6708 -1.0875 39 1 0.8215 -7.0232 -2.0389 40 1 -0.2067 -5.4117 -3.6176 41 1 -0.7779 -5.1303 -1.9552 42 1 -0.1858 -2.9942 -3.0666 43 1 0.8926 -3.3179 -1.6877 44 1 1.5405 -1.4908 -4.0643 45 1 3.1903 -2.0948 -4.3479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281502600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:37 Heat of formation + Delta-G solvation = -17.628062 kcal Electronic energy + Delta-G solvation = -24543.749808 eV Core-core repulsion = 21332.974010 eV Total energy + Delta-G solvation = -3210.775798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64527 -40.01414 -37.14750 -35.77079 -33.92612 -33.12390 -32.96678 -31.15837 -29.58300 -28.25576 -26.73349 -24.79335 -23.41597 -23.05853 -21.87349 -20.56067 -19.67258 -18.72836 -18.47161 -17.96716 -16.72342 -16.43860 -16.12302 -15.86614 -15.58587 -15.27060 -15.02256 -14.65508 -14.24567 -14.11956 -13.98750 -13.91788 -13.43275 -13.13950 -13.06838 -12.92068 -12.85264 -12.77263 -12.49434 -12.36965 -12.16281 -12.06177 -11.86537 -11.52853 -11.26120 -11.20840 -11.01154 -10.81481 -10.70629 -10.63821 -10.55903 -10.15550 -9.78894 -8.27905 -5.96718 1.34287 1.39899 1.53004 1.92088 2.13891 2.32278 2.40524 3.06801 3.18548 3.66114 3.75772 3.79379 3.89348 4.08730 4.12851 4.22413 4.33403 4.37450 4.47550 4.55246 4.57097 4.64764 4.66375 4.70512 4.77230 4.81381 4.91749 4.93845 5.04720 5.09834 5.18569 5.22378 5.24867 5.29868 5.34074 5.39469 5.42198 5.44604 5.45520 5.49824 5.58815 5.64121 5.75969 6.08640 6.47167 7.14525 7.16319 7.43882 8.00473 8.68670 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.004820 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.220988 B = 5807.207657 C = 6261.227270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.146 4.146 3 C 0.236 3.764 4 N -0.456 5.456 5 C -0.347 4.347 6 H 0.071 0.929 7 C 0.000 4.000 8 N -0.881 5.881 9 Si 0.987 3.013 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.264 1.264 13 C 0.447 3.553 14 O -0.632 6.632 15 C -0.087 4.087 16 H 0.089 0.911 17 C -0.105 4.105 18 C -0.105 4.105 19 C -0.081 4.081 20 H 0.064 0.936 21 C -0.107 4.107 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.070 4.070 26 H 0.076 0.924 27 C -0.088 4.088 28 H 0.232 0.768 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.271 0.729 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.212 -17.197 0.423 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.147 4.147 3 C 0.113 3.887 4 N -0.174 5.174 5 C -0.475 4.475 6 H 0.089 0.911 7 C -0.202 4.202 8 N -0.519 5.519 9 Si 0.811 3.189 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.189 1.189 13 C 0.237 3.763 14 O -0.520 6.520 15 C -0.108 4.108 16 H 0.107 0.893 17 C -0.143 4.143 18 C -0.142 4.142 19 C -0.099 4.099 20 H 0.083 0.917 21 C -0.144 4.144 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.156 4.156 25 C -0.089 4.089 26 H 0.094 0.906 27 C -0.126 4.126 28 H 0.249 0.751 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.037 -16.877 0.115 17.148 hybrid contribution 0.082 1.817 -0.101 1.822 sum -2.955 -15.059 0.014 15.346 Atomic orbital electron populations 1.25092 0.96275 1.04844 1.00788 1.23413 0.94893 0.96686 0.99725 1.18386 0.84723 0.97711 0.87840 1.43892 1.56344 1.08569 1.08601 1.19634 1.29112 0.83959 1.14790 0.91079 1.25986 0.95292 1.02935 0.96028 1.70094 1.24333 1.36591 1.20868 0.84972 0.77982 0.77495 0.78433 1.20188 1.20482 1.18899 1.21240 0.82900 0.89625 0.82512 1.90448 1.50305 1.78370 1.32828 1.21191 0.99775 0.90179 0.99661 0.89286 1.21509 0.96542 0.95807 1.00478 1.21643 1.01544 0.93512 0.97538 1.21130 0.97110 0.95161 0.96519 0.91724 1.21515 0.97930 0.94726 1.00248 1.21581 0.95195 0.99633 0.99320 1.21494 0.98175 0.93855 1.01515 1.21652 0.96579 0.97650 0.99693 1.21069 0.95656 0.92528 0.99636 0.90571 1.21291 0.99753 0.96881 0.94653 0.75149 0.89402 0.88483 0.91878 0.91820 0.92858 0.90658 0.90016 0.90868 0.91592 0.91755 0.90907 0.91728 0.91673 0.93301 0.92144 0.94494 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.03 19.25 74.32 1.43 -8.60 16 2 C -0.15 -6.48 10.19 31.13 0.32 -6.16 16 3 C 0.24 10.70 4.80 84.57 0.41 11.11 16 4 N -0.46 -24.11 2.60 -645.42 -1.68 -25.79 16 5 C -0.35 -20.13 9.37 84.04 0.79 -19.34 16 6 H 0.07 4.45 7.33 -2.91 -0.02 4.43 16 7 C 0.00 -0.02 5.11 84.93 0.43 0.41 16 8 N -0.88 -46.39 9.02 21.66 0.20 -46.20 16 9 Si 0.99 43.23 29.57 68.60 2.03 45.25 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 12 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 13 C 0.45 22.82 6.63 87.65 0.58 23.40 16 14 O -0.63 -37.41 15.81 -3.08 -0.05 -37.46 16 15 C -0.09 -3.30 1.42 -11.54 -0.02 -3.32 16 16 H 0.09 3.34 4.33 -2.39 -0.01 3.33 16 17 C -0.11 -3.30 5.01 30.60 0.15 -3.14 16 18 C -0.11 -2.40 4.59 30.60 0.14 -2.26 16 19 C -0.08 -1.76 2.47 -10.79 -0.03 -1.79 16 20 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 21 C -0.11 -1.75 5.45 30.59 0.17 -1.58 16 22 C -0.12 -1.89 5.65 30.59 0.17 -1.72 16 23 C -0.11 -2.04 5.92 30.60 0.18 -1.86 16 24 C -0.12 -2.83 4.58 30.58 0.14 -2.69 16 25 C -0.07 -1.80 2.46 -10.81 -0.03 -1.83 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 C -0.09 -3.10 4.30 30.59 0.13 -2.97 16 28 H 0.23 7.16 7.80 -4.41 -0.03 7.12 16 29 H 0.09 3.35 5.52 -2.39 -0.01 3.34 16 30 H 0.10 4.73 6.31 -2.39 -0.02 4.71 16 31 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 32 H 0.06 1.97 6.55 -2.39 -0.02 1.95 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.66 4.81 -2.39 -0.01 1.65 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.05 6.43 -2.38 -0.02 1.04 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.06 1.58 4.81 -2.39 -0.01 1.57 16 44 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.05 1.98 7.86 -2.38 -0.02 1.96 16 Total: -1.00 -68.00 335.13 6.44 -61.57 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.97 Total: 24.96 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 4.97 Total: -22.33 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -1.48 Total: -71.99 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.05 Total: -37.46 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -68.00 6.44 -61.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281502600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.938 kcal (2) G-P(sol) polarization free energy of solvation -68.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds