Wall clock time and date at job start Tue Mar 31 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46644 * 199.19628 * 3 2 1 5 5 C 1.37088 * 119.99997 * 273.04177 * 4 3 2 6 6 H 1.08001 * 120.00286 * 141.64078 * 5 4 3 7 7 C 1.38952 * 120.00575 * 321.63825 * 5 4 3 8 8 N 1.31411 * 120.00683 * 158.31058 * 7 5 4 9 9 Si 1.86804 * 119.99628 * 338.31752 * 7 5 4 10 10 H 1.48500 * 109.47537 * 93.82442 * 9 7 5 11 11 H 1.48499 * 109.47073 * 213.83148 * 9 7 5 12 12 H 1.48502 * 109.47005 * 333.82896 * 9 7 5 13 13 C 1.34777 * 119.99923 * 93.04394 * 4 3 2 14 14 O 1.21297 * 119.99998 * 185.14972 * 13 4 3 15 15 C 1.50706 * 120.00015 * 5.15677 * 13 4 3 16 16 H 1.08997 * 109.47497 * 35.43713 * 15 13 4 17 17 C 1.53005 * 109.46484 * 275.44454 * 15 13 4 18 18 C 1.53006 * 109.46705 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47134 * 60.00149 * 18 17 15 20 20 H 1.08997 * 109.47778 * 59.99417 * 19 18 17 21 21 C 1.53006 * 109.46959 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.46959 * 179.97438 * 21 19 18 23 23 C 1.53010 * 109.46705 * 299.99238 * 22 21 19 24 24 C 1.52997 * 109.47118 * 60.00422 * 23 22 21 25 25 C 1.52999 * 109.47329 * 299.99823 * 24 23 22 26 26 H 1.08999 * 109.46844 * 300.00710 * 25 24 23 27 27 C 1.52992 * 109.47192 * 155.44395 * 15 13 4 28 28 H 4.40644 * 5.51504 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47302 * 79.19860 * 3 2 1 30 30 H 1.08993 * 109.47279 * 319.19420 * 3 2 1 31 31 H 0.96991 * 120.00012 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47531 * 59.99929 * 17 15 13 33 33 H 1.09006 * 109.46745 * 299.99643 * 17 15 13 34 34 H 1.08995 * 109.47057 * 299.99757 * 18 17 15 35 35 H 1.09003 * 109.46712 * 179.97438 * 18 17 15 36 36 H 1.08995 * 109.47431 * 59.99485 * 21 19 18 37 37 H 1.09003 * 109.46513 * 299.99523 * 21 19 18 38 38 H 1.08999 * 109.47176 * 180.02562 * 22 21 19 39 39 H 1.08997 * 109.47778 * 59.99066 * 22 21 19 40 40 H 1.09009 * 109.46568 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.47343 * 299.99789 * 23 22 21 42 42 H 1.09005 * 109.46916 * 59.99697 * 24 23 22 43 43 H 1.08998 * 109.46951 * 179.97438 * 24 23 22 44 44 H 1.09005 * 109.47210 * 59.99892 * 27 15 13 45 45 H 1.09003 * 109.47370 * 299.99422 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3054 0.4542 5 6 3.3022 2.3254 -0.4460 6 1 3.0519 3.3384 -0.1675 7 6 3.7953 2.0562 -1.7170 8 7 3.5696 2.8972 -2.7012 9 14 4.7787 0.4985 -2.0265 10 1 3.8709 -0.5722 -2.5110 11 1 5.8199 0.7658 -3.0511 12 1 5.4274 0.0634 -0.7635 13 6 3.4166 1.5028 1.7571 14 8 3.7304 2.6069 2.1490 15 6 3.3432 0.3516 2.7269 16 1 3.6718 -0.5621 2.2319 17 6 1.9005 0.1808 3.2072 18 6 1.8260 -0.9876 4.1923 19 6 2.7323 -0.7021 5.3915 20 1 2.4035 0.2118 5.8861 21 6 2.6583 -1.8708 6.3763 22 6 3.5651 -1.5856 7.5751 23 6 5.0075 -1.4146 7.0942 24 6 5.0816 -0.2461 6.1094 25 6 4.1748 -0.5311 4.9105 26 1 4.5034 -1.4450 4.4156 27 6 4.2496 0.6364 3.9261 28 1 -1.0503 -0.0003 -0.0003 29 1 3.0095 -0.1918 -1.0094 30 1 3.0097 -0.7770 0.6715 31 1 3.9135 2.7090 -3.5883 32 1 1.2547 -0.0221 2.3528 33 1 1.5718 1.0946 3.7023 34 1 2.1549 -1.9014 3.6977 35 1 0.7984 -1.1090 4.5348 36 1 2.9874 -2.7844 5.8814 37 1 1.6306 -1.9929 6.7185 38 1 3.5127 -2.4183 8.2765 39 1 3.2365 -0.6718 8.0701 40 1 5.6537 -1.2118 7.9484 41 1 5.3363 -2.3284 6.5992 42 1 4.7529 0.6677 6.6045 43 1 6.1093 -0.1240 5.7671 44 1 3.9208 1.5502 4.4212 45 1 5.2774 0.7581 3.5839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281502603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:40 Heat of formation + Delta-G solvation = -3.515161 kcal Electronic energy + Delta-G solvation = -24122.690303 eV Core-core repulsion = 20912.526487 eV Total energy + Delta-G solvation = -3210.163816 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.15583 -38.57689 -35.49108 -35.03172 -32.61923 -32.28737 -31.59004 -30.13270 -28.54583 -26.74786 -25.32509 -23.25503 -22.51281 -21.60666 -20.10156 -19.82880 -18.72613 -18.18716 -16.66847 -16.25885 -15.71357 -15.19672 -15.02945 -14.45442 -14.17385 -14.05619 -13.75843 -13.54135 -13.30437 -13.08348 -12.83054 -12.71547 -12.32197 -12.07326 -11.91695 -11.66681 -11.41963 -11.35157 -11.08930 -10.95623 -10.80062 -10.75540 -10.70152 -10.46737 -10.29155 -10.23213 -9.84263 -9.73105 -9.65913 -9.36513 -9.08126 -8.41862 -7.85136 -6.39612 -3.98294 2.98508 3.16674 3.20109 3.21380 3.38252 3.71867 4.12841 4.40872 4.62296 4.65971 4.72305 4.85254 5.01292 5.03275 5.09044 5.22837 5.32128 5.39060 5.43190 5.47112 5.49288 5.57784 5.64053 5.70309 5.73012 5.76866 5.86120 5.91134 5.97359 6.01392 6.05300 6.11618 6.14059 6.17971 6.22058 6.32771 6.42017 6.42874 6.45689 6.49778 6.62769 6.75311 7.53558 8.12962 8.29362 8.48751 8.95194 9.30062 9.74296 10.72759 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.004789 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.061818 B = 5845.680254 C = 6320.881608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.168 4.168 3 C 0.190 3.810 4 N -0.466 5.466 5 C -0.317 4.317 6 H 0.105 0.895 7 C 0.062 3.938 8 N -0.862 5.862 9 Si 0.866 3.134 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.260 1.260 13 C 0.480 3.520 14 O -0.556 6.556 15 C -0.106 4.106 16 H 0.079 0.921 17 C -0.113 4.113 18 C -0.110 4.110 19 C -0.082 4.082 20 H 0.070 0.930 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.080 4.080 26 H 0.067 0.933 27 C -0.092 4.092 28 H 0.213 0.787 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.274 0.726 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.555 -13.195 15.106 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.170 4.170 3 C 0.067 3.933 4 N -0.187 5.187 5 C -0.444 4.444 6 H 0.123 0.877 7 C -0.143 4.143 8 N -0.498 5.498 9 Si 0.693 3.307 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.185 1.185 13 C 0.268 3.732 14 O -0.436 6.436 15 C -0.127 4.127 16 H 0.097 0.903 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.100 4.100 20 H 0.088 0.912 21 C -0.151 4.151 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.152 4.152 25 C -0.098 4.098 26 H 0.085 0.915 27 C -0.130 4.130 28 H 0.229 0.771 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.324 -12.529 15.088 19.656 hybrid contribution 0.255 -0.798 -0.603 1.033 sum -1.068 -13.327 14.485 19.712 Atomic orbital electron populations 1.24690 0.95629 1.01121 1.02330 1.23637 0.94793 0.99568 0.98992 1.18927 0.84258 0.88675 1.01444 1.43684 1.57534 1.10531 1.06943 1.19016 1.43151 0.89922 0.92341 0.87733 1.25327 0.96206 0.97552 0.95256 1.69754 1.41655 1.37585 1.00773 0.87135 0.81074 0.83401 0.79102 1.19972 1.20990 1.18453 1.20322 0.80022 0.89786 0.83025 1.90549 1.50153 1.25777 1.77166 1.21327 0.97112 0.98147 0.96132 0.90261 1.21565 0.95331 0.98822 0.99347 1.21566 0.99124 0.98301 0.95720 1.21186 0.95131 0.98339 0.95351 0.91185 1.21586 0.99189 0.98394 0.95931 1.21530 0.95367 1.01254 0.97494 1.21531 0.96477 0.98851 0.98730 1.21574 0.99609 0.98167 0.95841 1.21158 0.94597 0.98735 0.95354 0.91454 1.21349 0.99277 0.98092 0.94300 0.77060 0.89323 0.89197 0.91579 0.90954 0.91626 0.92091 0.92082 0.92146 0.92278 0.92487 0.92125 0.92407 0.92204 0.91940 0.92009 0.90909 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.75 18.99 29.55 0.56 -3.19 16 2 C -0.17 -3.32 11.62 -37.12 -0.43 -3.75 16 3 C 0.19 3.93 4.53 -6.82 -0.03 3.90 16 4 N -0.47 -11.43 2.13 -117.93 -0.25 -11.68 16 5 C -0.32 -9.13 9.35 -14.94 -0.14 -9.27 16 6 H 0.11 3.40 7.88 -52.49 -0.41 2.99 16 7 C 0.06 1.74 5.33 -17.47 -0.09 1.65 16 8 N -0.86 -25.18 13.96 55.50 0.77 -24.40 16 9 Si 0.87 20.22 25.10 -169.99 -4.27 15.95 16 10 H -0.27 -5.92 6.61 56.52 0.37 -5.55 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.48 11.22 6.73 -10.98 -0.07 11.15 16 14 O -0.56 -15.10 15.95 5.54 0.09 -15.02 16 15 C -0.11 -1.84 1.76 -91.77 -0.16 -2.00 16 16 H 0.08 1.27 6.23 -51.93 -0.32 0.94 16 17 C -0.11 -1.73 5.13 -26.73 -0.14 -1.87 16 18 C -0.11 -1.30 5.20 -26.73 -0.14 -1.44 16 19 C -0.08 -0.92 1.99 -90.61 -0.18 -1.10 16 20 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.11 -1.06 5.20 -26.73 -0.14 -1.20 16 22 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 23 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 24 C -0.11 -1.23 5.20 -26.73 -0.14 -1.37 16 25 C -0.08 -0.97 1.99 -90.67 -0.18 -1.15 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 C -0.09 -1.45 4.00 -26.79 -0.11 -1.56 16 28 H 0.21 2.70 7.80 -54.08 -0.42 2.28 16 29 H 0.09 1.93 3.15 -51.93 -0.16 1.77 16 30 H 0.09 1.54 5.72 -51.93 -0.30 1.25 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 1.17 5.36 -51.93 -0.28 0.89 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.24 7.87 -51.93 -0.41 0.84 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -31.69 343.14 -7.58 -39.27 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.39 Total: 4.34 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -1.71 Total: -13.63 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.52 Total: -36.09 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.09 Total: -15.02 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.27 Total: 15.95 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.69 -7.58 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281502603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.750 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds