Wall clock time and date at job start Tue Mar 31 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46644 * 199.19628 * 3 2 1 5 5 C 1.37088 * 119.99997 * 273.04177 * 4 3 2 6 6 H 1.08001 * 120.00286 * 141.64078 * 5 4 3 7 7 C 1.38952 * 120.00575 * 321.63825 * 5 4 3 8 8 N 1.31411 * 120.00683 * 158.31058 * 7 5 4 9 9 Si 1.86804 * 119.99628 * 338.31752 * 7 5 4 10 10 H 1.48500 * 109.47537 * 93.82442 * 9 7 5 11 11 H 1.48499 * 109.47073 * 213.83148 * 9 7 5 12 12 H 1.48502 * 109.47005 * 333.82896 * 9 7 5 13 13 C 1.34777 * 119.99923 * 93.04394 * 4 3 2 14 14 O 1.21297 * 119.99998 * 185.14972 * 13 4 3 15 15 C 1.50706 * 120.00015 * 5.15677 * 13 4 3 16 16 H 1.08997 * 109.47497 * 35.43713 * 15 13 4 17 17 C 1.53005 * 109.46484 * 275.44454 * 15 13 4 18 18 C 1.53006 * 109.46705 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47134 * 60.00149 * 18 17 15 20 20 H 1.08997 * 109.47778 * 59.99417 * 19 18 17 21 21 C 1.53006 * 109.46959 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.46959 * 179.97438 * 21 19 18 23 23 C 1.53010 * 109.46705 * 299.99238 * 22 21 19 24 24 C 1.52997 * 109.47118 * 60.00422 * 23 22 21 25 25 C 1.52999 * 109.47329 * 299.99823 * 24 23 22 26 26 H 1.08999 * 109.46844 * 300.00710 * 25 24 23 27 27 C 1.52992 * 109.47192 * 155.44395 * 15 13 4 28 28 H 4.40644 * 5.51504 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47302 * 79.19860 * 3 2 1 30 30 H 1.08993 * 109.47279 * 319.19420 * 3 2 1 31 31 H 0.96991 * 120.00012 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47531 * 59.99929 * 17 15 13 33 33 H 1.09006 * 109.46745 * 299.99643 * 17 15 13 34 34 H 1.08995 * 109.47057 * 299.99757 * 18 17 15 35 35 H 1.09003 * 109.46712 * 179.97438 * 18 17 15 36 36 H 1.08995 * 109.47431 * 59.99485 * 21 19 18 37 37 H 1.09003 * 109.46513 * 299.99523 * 21 19 18 38 38 H 1.08999 * 109.47176 * 180.02562 * 22 21 19 39 39 H 1.08997 * 109.47778 * 59.99066 * 22 21 19 40 40 H 1.09009 * 109.46568 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.47343 * 299.99789 * 23 22 21 42 42 H 1.09005 * 109.46916 * 59.99697 * 24 23 22 43 43 H 1.08998 * 109.46951 * 179.97438 * 24 23 22 44 44 H 1.09005 * 109.47210 * 59.99892 * 27 15 13 45 45 H 1.09003 * 109.47370 * 299.99422 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3054 0.4542 5 6 3.3022 2.3254 -0.4460 6 1 3.0519 3.3384 -0.1675 7 6 3.7953 2.0562 -1.7170 8 7 3.5696 2.8972 -2.7012 9 14 4.7787 0.4985 -2.0265 10 1 3.8709 -0.5722 -2.5110 11 1 5.8199 0.7658 -3.0511 12 1 5.4274 0.0634 -0.7635 13 6 3.4166 1.5028 1.7571 14 8 3.7304 2.6069 2.1490 15 6 3.3432 0.3516 2.7269 16 1 3.6718 -0.5621 2.2319 17 6 1.9005 0.1808 3.2072 18 6 1.8260 -0.9876 4.1923 19 6 2.7323 -0.7021 5.3915 20 1 2.4035 0.2118 5.8861 21 6 2.6583 -1.8708 6.3763 22 6 3.5651 -1.5856 7.5751 23 6 5.0075 -1.4146 7.0942 24 6 5.0816 -0.2461 6.1094 25 6 4.1748 -0.5311 4.9105 26 1 4.5034 -1.4450 4.4156 27 6 4.2496 0.6364 3.9261 28 1 -1.0503 -0.0003 -0.0003 29 1 3.0095 -0.1918 -1.0094 30 1 3.0097 -0.7770 0.6715 31 1 3.9135 2.7090 -3.5883 32 1 1.2547 -0.0221 2.3528 33 1 1.5718 1.0946 3.7023 34 1 2.1549 -1.9014 3.6977 35 1 0.7984 -1.1090 4.5348 36 1 2.9874 -2.7844 5.8814 37 1 1.6306 -1.9929 6.7185 38 1 3.5127 -2.4183 8.2765 39 1 3.2365 -0.6718 8.0701 40 1 5.6537 -1.2118 7.9484 41 1 5.3363 -2.3284 6.5992 42 1 4.7529 0.6677 6.6045 43 1 6.1093 -0.1240 5.7671 44 1 3.9208 1.5502 4.4212 45 1 5.2774 0.7581 3.5839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281502603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:39 Heat of formation + Delta-G solvation = -21.628129 kcal Electronic energy + Delta-G solvation = -24123.475741 eV Core-core repulsion = 20912.526487 eV Total energy + Delta-G solvation = -3210.949254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50730 -39.98726 -37.26449 -36.25627 -34.50085 -33.36011 -33.24300 -31.24170 -29.54993 -28.43779 -27.14937 -24.45141 -23.64588 -22.55298 -21.28561 -20.76796 -20.30745 -19.87753 -18.44579 -17.96147 -17.51647 -16.46211 -15.94782 -15.76797 -15.58257 -15.24030 -15.02168 -14.80476 -14.60462 -14.53484 -14.45070 -14.07386 -14.02801 -13.39510 -13.02809 -12.88208 -12.70664 -12.66028 -12.35276 -12.28408 -12.10972 -12.01849 -11.77987 -11.71413 -11.46353 -11.36780 -11.22809 -11.13936 -11.03360 -10.72273 -10.53113 -10.22860 -9.89753 -8.55104 -6.20417 1.14308 1.27629 1.40030 1.65899 1.91503 1.93546 2.14349 2.82083 2.89235 3.56240 3.66388 3.67738 3.72953 3.99072 4.03410 4.07353 4.17699 4.27127 4.29588 4.38593 4.49445 4.54738 4.58292 4.64537 4.67963 4.74798 4.79768 4.88154 4.92247 5.09006 5.10581 5.15721 5.16830 5.23308 5.27247 5.28896 5.40037 5.42231 5.46585 5.49763 5.51305 5.58359 5.74370 5.99300 6.48807 6.72997 6.87913 7.21980 7.78980 8.62519 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.004789 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.061818 B = 5845.680254 C = 6320.881608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.227 4.227 3 C 0.189 3.811 4 N -0.475 5.475 5 C -0.339 4.339 6 H 0.039 0.961 7 C 0.015 3.985 8 N -0.909 5.909 9 Si 0.938 3.062 10 H -0.237 1.237 11 H -0.281 1.281 12 H -0.248 1.248 13 C 0.469 3.531 14 O -0.611 6.611 15 C -0.094 4.094 16 H 0.104 0.896 17 C -0.108 4.108 18 C -0.101 4.101 19 C -0.080 4.080 20 H 0.056 0.944 21 C -0.108 4.108 22 C -0.119 4.119 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.072 4.072 26 H 0.081 0.919 27 C -0.089 4.089 28 H 0.254 0.746 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.281 0.719 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.059 -17.908 16.328 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.228 4.228 3 C 0.068 3.932 4 N -0.196 5.196 5 C -0.467 4.467 6 H 0.057 0.943 7 C -0.188 4.188 8 N -0.546 5.546 9 Si 0.760 3.240 10 H -0.162 1.162 11 H -0.208 1.208 12 H -0.172 1.172 13 C 0.260 3.740 14 O -0.494 6.494 15 C -0.116 4.116 16 H 0.122 0.878 17 C -0.146 4.146 18 C -0.138 4.138 19 C -0.099 4.099 20 H 0.075 0.925 21 C -0.145 4.145 22 C -0.157 4.157 23 C -0.152 4.152 24 C -0.153 4.153 25 C -0.090 4.090 26 H 0.100 0.900 27 C -0.127 4.127 28 H 0.270 0.730 29 H 0.098 0.902 30 H 0.146 0.854 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.855 -17.271 16.314 23.830 hybrid contribution 0.303 0.849 -0.983 1.334 sum -1.552 -16.422 15.332 22.520 Atomic orbital electron populations 1.25670 0.96517 0.98119 0.99523 1.23681 0.95258 1.02247 1.01619 1.19023 0.85457 0.87069 1.01694 1.43784 1.57956 1.11117 1.06710 1.18585 1.45108 0.88992 0.93995 0.94335 1.26153 0.96335 1.02109 0.94161 1.69872 1.42709 1.40487 1.01551 0.85991 0.79377 0.79126 0.79485 1.16236 1.20773 1.17169 1.21500 0.78207 0.90791 0.83478 1.90507 1.52246 1.28515 1.78174 1.21350 0.99203 0.95934 0.95076 0.87791 1.21536 0.93323 0.99703 0.99992 1.21543 1.00494 0.96933 0.94855 1.21171 0.94053 0.98985 0.95693 0.92536 1.21543 1.00088 0.97451 0.95424 1.21543 0.94800 1.01708 0.97600 1.21508 0.97138 0.98052 0.98464 1.21569 0.99054 0.98838 0.95806 1.21113 0.95883 0.97171 0.94838 0.90037 1.21334 0.97877 0.98996 0.94500 0.73024 0.90236 0.85438 0.90940 0.91394 0.93832 0.90244 0.90312 0.91091 0.91202 0.90839 0.92666 0.91558 0.91374 0.92958 0.92296 0.93448 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.67 18.99 74.32 1.41 -4.26 16 2 C -0.23 -8.55 11.62 31.13 0.36 -8.19 16 3 C 0.19 7.57 4.53 84.57 0.38 7.95 16 4 N -0.47 -23.96 2.13 -645.39 -1.37 -25.33 16 5 C -0.34 -20.71 9.35 84.04 0.79 -19.93 16 6 H 0.04 2.78 7.88 -2.91 -0.02 2.76 16 7 C 0.01 0.85 5.33 84.93 0.45 1.30 16 8 N -0.91 -55.34 13.96 21.66 0.30 -55.04 16 9 Si 0.94 41.58 25.10 68.60 1.72 43.30 16 10 H -0.24 -9.19 6.61 99.48 0.66 -8.53 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 13 C 0.47 22.84 6.73 87.66 0.59 23.43 16 14 O -0.61 -35.69 15.95 -3.08 -0.05 -35.74 16 15 C -0.09 -3.23 1.76 -11.54 -0.02 -3.25 16 16 H 0.10 3.04 6.23 -2.39 -0.01 3.02 16 17 C -0.11 -3.18 5.13 30.60 0.16 -3.02 16 18 C -0.10 -2.06 5.20 30.60 0.16 -1.90 16 19 C -0.08 -1.60 1.99 -10.79 -0.02 -1.62 16 20 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 21 C -0.11 -1.58 5.20 30.60 0.16 -1.42 16 22 C -0.12 -1.67 5.92 30.60 0.18 -1.49 16 23 C -0.11 -1.73 5.92 30.60 0.18 -1.55 16 24 C -0.12 -2.31 5.20 30.59 0.16 -2.15 16 25 C -0.07 -1.59 1.99 -10.82 -0.02 -1.62 16 26 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 27 C -0.09 -2.82 4.00 30.56 0.12 -2.70 16 28 H 0.25 5.33 7.80 -4.40 -0.03 5.29 16 29 H 0.08 3.29 3.15 -2.39 -0.01 3.28 16 30 H 0.13 3.98 5.72 -2.39 -0.01 3.96 16 31 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.07 2.08 5.36 -2.39 -0.01 2.06 16 33 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.05 1.72 7.87 -2.38 -0.02 1.70 16 45 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -76.45 343.14 6.55 -69.91 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.90 Total: 23.32 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 5.04 Total: -20.41 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.07 Total: -80.37 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.05 Total: -35.74 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.72 Total: 43.30 kcal Total: -76.45 6.55 -69.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281502603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.278 kcal (2) G-P(sol) polarization free energy of solvation -76.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds