Wall clock time and date at job start Tue Mar 31 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47122 * 353.50893 * 3 2 1 5 5 C 1.37097 * 119.99438 * 268.66885 * 4 3 2 6 6 H 1.08007 * 119.99678 * 201.89454 * 5 4 3 7 7 C 1.38947 * 120.00362 * 21.89093 * 5 4 3 8 8 N 1.31412 * 120.00288 * 23.99080 * 7 5 4 9 9 Si 1.86809 * 120.00160 * 203.99128 * 7 5 4 10 10 H 1.48504 * 109.46960 * 59.99982 * 9 7 5 11 11 H 1.48495 * 109.47066 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46896 * 300.00291 * 9 7 5 13 13 C 1.34772 * 120.00406 * 88.66384 * 4 3 2 14 14 O 1.21292 * 120.00216 * 185.13334 * 13 4 3 15 15 C 1.50699 * 120.00058 * 5.13686 * 13 4 3 16 16 H 1.09007 * 109.46760 * 325.61014 * 15 13 4 17 17 C 1.52994 * 109.47262 * 205.60892 * 15 13 4 18 18 C 1.52999 * 109.47211 * 179.97438 * 17 15 13 19 19 C 1.53002 * 109.47015 * 59.99672 * 18 17 15 20 20 H 1.09007 * 109.47294 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47223 * 60.00427 * 19 18 17 22 22 C 1.53002 * 109.47223 * 179.97438 * 21 19 18 23 23 C 1.52994 * 109.47399 * 59.99786 * 22 21 19 24 24 C 1.53000 * 109.47108 * 300.00284 * 23 22 21 25 25 C 1.52994 * 109.47399 * 300.00213 * 19 18 17 26 26 H 1.09007 * 109.47333 * 300.00006 * 25 19 18 27 27 C 1.52999 * 109.47211 * 59.99907 * 25 19 18 28 28 H 4.40646 * 5.51506 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.46973 * 233.50430 * 3 2 1 30 30 H 1.09000 * 109.46946 * 113.50493 * 3 2 1 31 31 H 0.96990 * 120.00365 * 179.97438 * 8 7 5 32 32 H 1.08991 * 109.47375 * 59.99811 * 17 15 13 33 33 H 1.09004 * 109.46873 * 299.99539 * 17 15 13 34 34 H 1.09001 * 109.47554 * 300.00312 * 18 17 15 35 35 H 1.09003 * 109.47277 * 179.97438 * 18 17 15 36 36 H 1.09007 * 109.46640 * 299.99977 * 21 19 18 37 37 H 1.08997 * 109.47282 * 59.99251 * 21 19 18 38 38 H 1.08997 * 109.46922 * 299.99189 * 22 21 19 39 39 H 1.09007 * 109.46883 * 180.02562 * 22 21 19 40 40 H 1.08991 * 109.47375 * 179.97438 * 23 22 21 41 41 H 1.09007 * 109.47069 * 59.99653 * 23 22 21 42 42 H 1.09007 * 109.46640 * 299.99631 * 24 23 22 43 43 H 1.08997 * 109.47282 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.47277 * 180.02562 * 27 25 19 45 45 H 1.08995 * 109.47098 * 60.00223 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3715 0.1561 5 6 3.3897 -1.8701 1.4076 6 1 4.0601 -2.7082 1.5288 7 6 2.7854 -1.2973 2.5200 8 7 1.6589 -0.6338 2.3872 9 14 3.5744 -1.4702 4.2044 10 1 4.9300 -0.8643 4.1806 11 1 2.7393 -0.7742 5.2160 12 1 3.6815 -2.9092 4.5554 13 6 3.3343 -2.1437 -0.9303 14 8 3.6493 -3.3075 -0.7978 15 6 3.1659 -1.5611 -2.3099 16 1 2.3653 -0.8215 -2.2967 17 6 2.8131 -2.6771 -3.2952 18 6 2.6415 -2.0856 -4.6957 19 6 3.9468 -1.4158 -5.1299 20 1 3.8245 -0.9939 -6.1275 21 6 5.0709 -2.4536 -5.1488 22 6 6.3761 -1.7839 -5.5836 23 6 6.7292 -0.6676 -4.5988 24 6 5.6052 0.3702 -4.5798 25 6 4.2997 -0.2998 -4.1446 26 1 3.4989 0.4397 -4.1311 27 6 4.4713 -0.8913 -2.7440 28 1 -1.0498 -0.0005 -0.0001 29 1 3.0090 0.6120 0.8261 30 1 3.0091 0.4107 -0.9424 31 1 1.2369 -0.2343 3.1637 32 1 1.8830 -3.1540 -2.9862 33 1 3.6137 -3.4167 -3.3084 34 1 1.8408 -1.3462 -4.6823 35 1 2.3906 -2.8808 -5.3978 36 1 5.1931 -2.8751 -4.1510 37 1 4.8195 -3.2487 -5.8507 38 1 6.2535 -1.3629 -6.5814 39 1 7.1768 -2.5235 -5.5975 40 1 7.6592 -0.1909 -4.9082 41 1 6.8517 -1.0887 -3.6008 42 1 5.4827 0.7913 -5.5777 43 1 5.8569 1.1658 -3.8785 44 1 4.7222 -0.0962 -2.0420 45 1 5.2720 -1.6307 -2.7575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281502607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:41 Heat of formation + Delta-G solvation = -18.394985 kcal Electronic energy + Delta-G solvation = -24475.761430 eV Core-core repulsion = 21264.952376 eV Total energy + Delta-G solvation = -3210.809054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63065 -39.95522 -37.11967 -35.74192 -34.01111 -33.15718 -32.90152 -31.17071 -29.43431 -28.18819 -26.80053 -24.77988 -23.79782 -23.02481 -21.68414 -20.35453 -19.65575 -18.85822 -18.32734 -17.85297 -16.64514 -16.51529 -16.35129 -15.93303 -15.70876 -15.22571 -14.87939 -14.67564 -14.33564 -14.13178 -13.88262 -13.76354 -13.52432 -13.35406 -13.04817 -12.93164 -12.87482 -12.72041 -12.48578 -12.23854 -12.17010 -12.03216 -11.67215 -11.48623 -11.37104 -11.12383 -11.07908 -10.88868 -10.65493 -10.64343 -10.57482 -10.08559 -9.80267 -8.25963 -5.93921 1.36403 1.40395 1.50132 1.91157 2.18963 2.34684 2.43005 3.03361 3.21052 3.73309 3.76079 3.78779 3.92130 4.05365 4.14565 4.28020 4.29656 4.37027 4.45452 4.55815 4.57272 4.65100 4.67928 4.73721 4.78881 4.81762 4.84107 4.86542 4.96682 5.07023 5.16663 5.22952 5.26076 5.30370 5.32093 5.41305 5.44198 5.44376 5.47497 5.53599 5.59005 5.63071 5.76277 6.09416 6.46842 7.17073 7.22879 7.44553 8.03440 8.66645 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.004946 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.606221 B = 5659.899525 C = 6012.393123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.149 4.149 3 C 0.237 3.763 4 N -0.453 5.453 5 C -0.358 4.358 6 H 0.069 0.931 7 C 0.005 3.995 8 N -0.863 5.863 9 Si 0.979 3.021 10 H -0.265 1.265 11 H -0.273 1.273 12 H -0.281 1.281 13 C 0.446 3.554 14 O -0.632 6.632 15 C -0.087 4.087 16 H 0.085 0.915 17 C -0.094 4.094 18 C -0.106 4.106 19 C -0.074 4.074 20 H 0.092 0.908 21 C -0.122 4.122 22 C -0.113 4.113 23 C -0.125 4.125 24 C -0.108 4.108 25 C -0.076 4.076 26 H 0.080 0.920 27 C -0.096 4.096 28 H 0.228 0.772 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.271 0.729 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 6.466 -15.853 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.151 4.151 3 C 0.115 3.885 4 N -0.170 5.170 5 C -0.485 4.485 6 H 0.087 0.913 7 C -0.199 4.199 8 N -0.499 5.499 9 Si 0.803 3.197 10 H -0.190 1.190 11 H -0.197 1.197 12 H -0.207 1.207 13 C 0.237 3.763 14 O -0.520 6.520 15 C -0.108 4.108 16 H 0.103 0.897 17 C -0.133 4.133 18 C -0.143 4.143 19 C -0.092 4.092 20 H 0.111 0.889 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.163 4.163 24 C -0.145 4.145 25 C -0.094 4.094 26 H 0.098 0.902 27 C -0.134 4.134 28 H 0.245 0.755 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.164 6.027 -15.626 17.258 hybrid contribution -0.155 -0.606 1.753 1.861 sum 4.009 5.421 -13.874 15.425 Atomic orbital electron populations 1.24988 0.96233 1.00092 1.05141 1.23312 0.94946 1.00166 0.96707 1.18223 0.84778 0.84135 1.01404 1.43894 1.56761 1.11020 1.05345 1.19432 1.27197 1.18775 0.83141 0.91333 1.25989 0.94531 0.96908 1.02502 1.70213 1.13396 1.34430 1.31873 0.85233 0.78786 0.78190 0.77518 1.19031 1.19738 1.20681 1.21222 0.81807 0.85758 0.87509 1.90452 1.54704 1.19148 1.87654 1.21165 1.00344 0.98826 0.90485 0.89731 1.21294 1.00216 0.96647 0.95098 1.21565 0.98158 1.00397 0.94200 1.21109 0.93722 0.95126 0.99246 0.88942 1.21687 0.95351 0.98071 1.00813 1.21487 0.96581 0.97532 0.99403 1.21593 0.98662 0.96847 0.99167 1.21531 0.93527 0.97351 1.02112 1.21142 0.98644 0.97082 0.92554 0.90172 1.21567 0.94829 0.99256 0.97750 0.75493 0.90238 0.88108 0.91920 0.94558 0.92657 0.91086 0.90659 0.93851 0.91637 0.90544 0.92421 0.91115 0.93789 0.90059 0.91877 0.92308 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.19 19.04 74.32 1.42 -8.78 16 2 C -0.15 -6.78 10.60 31.13 0.33 -6.45 16 3 C 0.24 10.59 4.82 84.57 0.41 11.00 16 4 N -0.45 -23.77 2.58 -645.41 -1.67 -25.43 16 5 C -0.36 -20.77 9.18 84.04 0.77 -20.00 16 6 H 0.07 4.30 7.53 -2.91 -0.02 4.27 16 7 C 0.01 0.27 4.79 84.93 0.41 0.68 16 8 N -0.86 -46.18 9.41 21.66 0.20 -45.97 16 9 Si 0.98 42.92 29.62 68.60 2.03 44.96 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.45 22.69 6.71 87.66 0.59 23.28 16 14 O -0.63 -37.62 15.83 -3.07 -0.05 -37.67 16 15 C -0.09 -3.24 1.68 -11.54 -0.02 -3.26 16 16 H 0.08 3.04 6.35 -2.38 -0.02 3.02 16 17 C -0.09 -3.26 4.47 30.59 0.14 -3.12 16 18 C -0.11 -2.54 5.45 30.59 0.17 -2.38 16 19 C -0.07 -1.53 2.46 -10.79 -0.03 -1.56 16 20 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 21 C -0.12 -2.72 4.59 30.59 0.14 -2.58 16 22 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 23 C -0.13 -2.47 5.65 30.59 0.17 -2.30 16 24 C -0.11 -1.99 5.45 30.61 0.17 -1.82 16 25 C -0.08 -1.69 2.46 -10.78 -0.03 -1.71 16 26 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 27 C -0.10 -2.97 3.67 30.59 0.11 -2.85 16 28 H 0.23 7.48 7.80 -4.43 -0.03 7.45 16 29 H 0.08 3.70 7.13 -2.39 -0.02 3.69 16 30 H 0.10 3.69 5.45 -2.39 -0.01 3.68 16 31 H 0.27 13.73 8.31 -92.72 -0.77 12.96 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 2.09 6.16 -2.38 -0.01 2.08 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 1.25 4.81 -2.38 -0.01 1.24 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.04 1.07 6.43 -2.38 -0.02 1.06 16 42 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.06 1.83 7.26 -2.39 -0.02 1.81 16 45 H 0.06 1.97 4.81 -2.39 -0.01 1.96 16 Total: -1.00 -69.52 337.31 6.41 -63.11 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.96 Total: 24.77 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 4.92 Total: -23.76 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -1.46 Total: -71.40 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -0.05 Total: -37.67 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.96 kcal Total: -69.52 6.41 -63.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281502607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.714 kcal (2) G-P(sol) polarization free energy of solvation -69.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds