Wall clock time and date at job start Tue Mar 31 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47011 * 52.09739 * 3 2 1 5 5 C 1.37097 * 120.00528 * 263.00771 * 4 3 2 6 6 H 1.07995 * 120.00181 * 201.38773 * 5 4 3 7 7 C 1.38956 * 119.99651 * 21.38607 * 5 4 3 8 8 N 1.31413 * 119.99909 * 14.95225 * 7 5 4 9 9 Si 1.86800 * 119.99709 * 194.94564 * 7 5 4 10 10 H 1.48491 * 109.47305 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46799 * 120.00427 * 9 7 5 12 12 H 1.48504 * 109.46954 * 239.99966 * 9 7 5 13 13 C 1.34778 * 119.99559 * 83.01257 * 4 3 2 14 14 O 1.21293 * 120.00111 * 3.55462 * 13 4 3 15 15 C 1.50702 * 119.99840 * 183.55655 * 13 4 3 16 16 H 1.08997 * 109.46862 * 48.63527 * 15 13 4 17 17 C 1.52997 * 109.46934 * 288.63381 * 15 13 4 18 18 C 1.52995 * 109.47512 * 299.99957 * 17 15 13 19 19 C 1.53006 * 109.47285 * 300.00380 * 18 17 15 20 20 H 1.09002 * 109.46941 * 299.99899 * 19 18 17 21 21 C 1.52993 * 109.47436 * 179.97438 * 19 18 17 22 22 C 1.53002 * 109.47201 * 179.97438 * 21 19 18 23 23 C 1.53006 * 109.46943 * 60.00519 * 22 21 19 24 24 C 1.53005 * 109.46630 * 299.99996 * 23 22 21 25 25 C 1.52996 * 109.47336 * 59.99831 * 24 23 22 26 26 H 1.09002 * 109.47109 * 59.99871 * 25 24 23 27 27 C 1.53004 * 109.46852 * 179.97438 * 25 24 23 28 28 H 4.40645 * 5.51432 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.46987 * 172.10455 * 3 2 1 30 30 H 1.09005 * 109.46917 * 292.10070 * 3 2 1 31 31 H 0.96999 * 120.00056 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47201 * 60.00090 * 17 15 13 33 33 H 1.09007 * 109.47251 * 179.97438 * 17 15 13 34 34 H 1.08994 * 109.47596 * 180.02562 * 18 17 15 35 35 H 1.09001 * 109.47132 * 59.99432 * 18 17 15 36 36 H 1.09004 * 109.47158 * 59.99988 * 21 19 18 37 37 H 1.09002 * 109.47263 * 300.00057 * 21 19 18 38 38 H 1.08990 * 109.47211 * 300.00137 * 22 21 19 39 39 H 1.09001 * 109.46851 * 179.97438 * 22 21 19 40 40 H 1.08989 * 109.46917 * 179.97438 * 23 22 21 41 41 H 1.08996 * 109.47344 * 59.99353 * 23 22 21 42 42 H 1.09002 * 109.47127 * 299.99713 * 24 23 22 43 43 H 1.09004 * 109.46858 * 180.02562 * 24 23 22 44 44 H 1.08995 * 109.46874 * 60.00942 * 27 25 24 45 45 H 1.08994 * 109.47538 * 300.00126 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8476 -1.0899 5 6 3.5001 -2.1448 -0.8380 6 1 4.1645 -2.6600 -1.5157 7 6 3.0154 -2.7966 0.2895 8 7 1.9955 -2.2963 0.9500 9 14 3.8137 -4.3840 0.8659 10 1 4.9348 -4.7329 -0.0431 11 1 4.3332 -4.2042 2.2455 12 1 2.8079 -5.4765 0.8542 13 6 3.2252 -0.3527 -2.3402 14 8 2.9637 0.8126 -2.5516 15 6 3.6513 -1.2474 -3.4757 16 1 3.0753 -2.1722 -3.4452 17 6 5.1408 -1.5693 -3.3399 18 6 5.9492 -0.2711 -3.3825 19 6 5.7006 0.4410 -4.7138 20 1 6.0088 -0.2060 -5.5350 21 6 6.5086 1.7396 -4.7562 22 6 6.2604 2.4513 -6.0877 23 6 4.7708 2.7729 -6.2242 24 6 3.9628 1.4742 -6.1817 25 6 4.2111 0.7625 -4.8503 26 1 3.9023 1.4095 -4.0293 27 6 3.4026 -0.5358 -4.8077 28 1 -1.0499 0.0000 -0.0003 29 1 3.0089 1.0187 -0.1412 30 1 3.0095 -0.3858 0.9522 31 1 1.6569 -2.7515 1.7368 32 1 5.3179 -2.0766 -2.3915 33 1 5.4489 -2.2168 -4.1609 34 1 7.0104 -0.5005 -3.2863 35 1 5.6410 0.3760 -2.5614 36 1 7.5698 1.5105 -4.6593 37 1 6.2000 2.3865 -3.9350 38 1 6.5692 1.8043 -6.9086 39 1 6.8357 3.3767 -6.1177 40 1 4.5941 3.2803 -7.1725 41 1 4.4620 3.4199 -5.4032 42 1 4.2716 0.8272 -7.0027 43 1 2.9016 1.7032 -6.2794 44 1 3.7111 -1.1830 -5.6286 45 1 2.3415 -0.3065 -4.9047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281502610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:44 Heat of formation + Delta-G solvation = -11.911333 kcal Electronic energy + Delta-G solvation = -24642.265669 eV Core-core repulsion = 21431.737767 eV Total energy + Delta-G solvation = -3210.527902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59231 -39.53672 -37.00458 -36.05454 -33.75992 -33.23622 -33.08451 -31.05061 -29.43467 -28.29025 -26.62197 -24.31411 -23.49036 -22.50458 -21.68006 -20.71593 -20.29133 -19.34852 -18.24811 -17.52581 -16.48361 -16.18304 -16.12569 -15.84226 -15.44968 -15.20759 -14.78907 -14.63003 -14.47232 -14.38447 -13.81879 -13.76712 -13.37084 -13.15160 -12.86293 -12.79857 -12.70936 -12.65194 -12.27074 -12.21276 -12.04394 -11.86678 -11.67817 -11.52506 -11.51397 -11.27139 -11.20395 -11.01407 -10.58530 -10.51034 -10.38232 -9.82478 -9.69401 -8.20134 -5.87849 1.42823 1.49827 1.61107 1.95011 2.19956 2.35134 2.42176 3.16714 3.24373 3.77718 3.85301 3.91261 3.92961 4.14836 4.19122 4.31691 4.37967 4.48475 4.56771 4.63210 4.67087 4.77154 4.81186 4.82642 4.86766 4.89457 4.97091 4.97876 5.03508 5.13420 5.16300 5.20061 5.27724 5.32146 5.32810 5.39904 5.48853 5.50259 5.51746 5.60738 5.67462 5.70200 5.81483 6.09427 6.47868 7.12475 7.20026 7.65473 8.07674 8.79290 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.005437 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.559218 B = 5148.631416 C = 5908.121203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.139 4.139 3 C 0.245 3.755 4 N -0.453 5.453 5 C -0.354 4.354 6 H 0.122 0.878 7 C -0.008 4.008 8 N -0.887 5.887 9 Si 0.984 3.016 10 H -0.253 1.253 11 H -0.282 1.282 12 H -0.287 1.287 13 C 0.467 3.533 14 O -0.619 6.619 15 C -0.087 4.087 16 H 0.076 0.924 17 C -0.109 4.109 18 C -0.109 4.109 19 C -0.070 4.070 20 H 0.079 0.921 21 C -0.112 4.112 22 C -0.111 4.111 23 C -0.117 4.117 24 C -0.107 4.107 25 C -0.099 4.099 26 H 0.077 0.923 27 C -0.084 4.084 28 H 0.233 0.767 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.266 0.734 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.009 2.132 -10.740 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.141 4.141 3 C 0.122 3.878 4 N -0.171 5.171 5 C -0.481 4.481 6 H 0.140 0.860 7 C -0.211 4.211 8 N -0.525 5.525 9 Si 0.808 3.192 10 H -0.176 1.176 11 H -0.208 1.208 12 H -0.213 1.213 13 C 0.258 3.742 14 O -0.506 6.506 15 C -0.109 4.109 16 H 0.094 0.906 17 C -0.146 4.146 18 C -0.146 4.146 19 C -0.089 4.089 20 H 0.098 0.902 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.155 4.155 24 C -0.145 4.145 25 C -0.117 4.117 26 H 0.095 0.905 27 C -0.122 4.122 28 H 0.249 0.751 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.806 2.640 -10.644 13.461 hybrid contribution -0.657 -0.772 1.161 1.542 sum 7.149 1.867 -9.483 12.022 Atomic orbital electron populations 1.25082 0.96370 1.04719 1.02311 1.23607 0.95250 0.96621 0.98606 1.17885 0.84377 0.92939 0.92639 1.43894 1.56174 1.11618 1.05433 1.20326 1.28099 0.88623 1.11078 0.86043 1.26178 0.95197 1.02082 0.97622 1.70201 1.22058 1.41098 1.19133 0.85003 0.78410 0.77452 0.78330 1.17594 1.20825 1.21342 1.20891 0.80842 0.88457 0.84031 1.90385 1.56951 1.19589 1.83701 1.21043 0.98696 0.97862 0.93253 0.90606 1.21601 0.91803 0.98066 1.03131 1.21523 0.99697 0.96014 0.97374 1.21079 0.94551 0.96381 0.96841 0.90247 1.21557 0.99693 0.96118 0.97625 1.21484 0.95640 1.00450 0.97214 1.21511 0.95779 0.96952 1.01251 1.21518 0.99033 0.96922 0.97023 1.21475 0.94671 0.96750 0.98846 0.90466 1.21324 0.98987 0.96997 0.94882 0.75057 0.92439 0.88868 0.92435 0.91256 0.89356 0.90668 0.95343 0.91011 0.94348 0.90810 0.91328 0.90874 0.93996 0.91113 0.93616 0.90012 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.37 19.25 74.32 1.43 -10.94 16 2 C -0.14 -7.16 11.50 31.13 0.36 -6.81 16 3 C 0.24 12.47 5.07 84.58 0.43 12.90 16 4 N -0.45 -22.84 2.60 -645.40 -1.68 -24.51 16 5 C -0.35 -17.33 8.49 84.04 0.71 -16.62 16 6 H 0.12 5.46 4.55 -2.91 -0.01 5.45 16 7 C -0.01 -0.42 5.00 84.93 0.42 0.01 16 8 N -0.89 -46.49 9.29 21.67 0.20 -46.29 16 9 Si 0.98 38.81 29.58 68.60 2.03 40.84 16 10 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 11 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.29 -11.49 7.11 99.48 0.71 -10.78 16 13 C 0.47 22.24 5.47 87.66 0.48 22.72 16 14 O -0.62 -32.05 12.99 -3.07 -0.04 -32.09 16 15 C -0.09 -3.37 2.19 -11.52 -0.03 -3.39 16 16 H 0.08 3.03 7.75 -2.39 -0.02 3.01 16 17 C -0.11 -3.54 5.13 30.59 0.16 -3.38 16 18 C -0.11 -3.40 4.98 30.59 0.15 -3.25 16 19 C -0.07 -1.95 1.99 -10.79 -0.02 -1.97 16 20 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 21 C -0.11 -2.80 5.20 30.59 0.16 -2.64 16 22 C -0.11 -2.30 5.92 30.60 0.18 -2.12 16 23 C -0.12 -2.78 5.92 30.60 0.18 -2.60 16 24 C -0.11 -2.87 5.20 30.59 0.16 -2.71 16 25 C -0.10 -3.22 1.70 -10.79 -0.02 -3.24 16 26 H 0.08 3.24 5.13 -2.39 -0.01 3.23 16 27 C -0.08 -2.84 4.47 30.61 0.14 -2.71 16 28 H 0.23 8.49 7.80 -4.42 -0.03 8.45 16 29 H 0.06 2.88 7.59 -2.39 -0.02 2.87 16 30 H 0.09 4.86 6.45 -2.38 -0.02 4.84 16 31 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 32 H 0.07 2.47 5.37 -2.39 -0.01 2.46 16 33 H 0.09 2.33 8.14 -2.38 -0.02 2.32 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.03 1.09 7.22 -2.39 -0.02 1.07 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -60.58 339.29 6.36 -54.22 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.96 Total: 34.60 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 4.90 Total: -26.76 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -1.48 Total: -70.81 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.04 Total: -32.09 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -60.58 6.36 -54.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281502610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.306 kcal (2) G-P(sol) polarization free energy of solvation -60.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds