Wall clock time and date at job start Tue Mar 31 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 120.00186 * 2 1 4 4 C 1.53003 * 109.47110 * 124.99630 * 3 2 1 5 5 H 1.08999 * 109.47108 * 54.99687 * 4 3 2 6 6 C 1.53000 * 109.47111 * 175.00129 * 4 3 2 7 7 C 1.52996 * 109.47309 * 185.84203 * 6 4 3 8 8 N 1.46903 * 109.47081 * 294.99947 * 4 3 2 9 9 C 1.46905 * 110.99723 * 105.55403 * 8 4 3 10 10 H 1.08992 * 109.47162 * 326.18572 * 9 8 4 11 11 C 1.53003 * 109.46865 * 86.18269 * 9 8 4 12 12 C 1.50697 * 109.46920 * 206.18047 * 9 8 4 13 13 C 1.38306 * 119.92734 * 139.99962 * 12 9 8 14 14 C 1.38103 * 120.06444 * 180.02562 * 13 12 9 15 15 C 1.38879 * 119.93409 * 0.28140 * 14 13 12 16 16 O 1.35746 * 120.06648 * 179.71941 * 15 14 13 17 17 C 1.34830 * 117.00379 * 354.62559 * 16 15 14 18 18 H 1.07995 * 120.00067 * 354.40794 * 17 16 15 19 19 C 1.38655 * 119.99777 * 174.40130 * 17 16 15 20 20 N 1.31557 * 119.99475 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00390 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47434 * 89.99803 * 21 19 17 23 23 H 1.48501 * 109.47446 * 210.00006 * 21 19 17 24 24 H 1.48503 * 109.47279 * 329.99933 * 21 19 17 25 25 C 1.38879 * 119.85696 * 359.42059 * 15 14 13 26 26 C 1.38096 * 119.93468 * 0.58047 * 25 15 14 27 27 H 1.08001 * 119.99566 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.00214 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99566 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46787 * 4.99969 * 3 2 1 31 31 H 1.08995 * 109.47280 * 244.99679 * 3 2 1 32 32 H 1.08998 * 109.46734 * 305.84282 * 6 4 3 33 33 H 1.08997 * 109.47421 * 65.83950 * 6 4 3 34 34 H 1.09001 * 109.47312 * 177.14722 * 7 6 4 35 35 H 1.09001 * 109.46853 * 297.15169 * 7 6 4 36 36 H 1.09003 * 109.46732 * 57.14992 * 7 6 4 37 37 H 1.00903 * 111.00079 * 229.50328 * 8 4 3 38 38 H 1.09000 * 109.46829 * 174.79439 * 11 9 8 39 39 H 1.08999 * 109.47637 * 294.79827 * 11 9 8 40 40 H 1.09000 * 109.47146 * 54.80440 * 11 9 8 41 41 H 1.07996 * 119.96809 * 0.02562 * 13 12 9 42 42 H 1.08000 * 120.03127 * 179.97438 * 14 13 12 43 43 H 0.97006 * 119.99701 * 180.02562 * 20 19 17 44 44 H 1.08004 * 120.03137 * 180.29765 * 25 15 14 45 45 H 1.07998 * 119.96652 * 179.74428 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 1 3.6826 0.4572 1.1405 6 6 3.8876 2.6016 1.1111 7 6 4.9554 2.5601 2.2061 8 7 2.2765 1.3223 2.4396 9 6 2.3493 0.0056 3.0871 10 1 2.3877 -0.7724 2.3248 11 6 3.6078 -0.0674 3.9541 12 6 1.1315 -0.1972 3.9512 13 6 0.5129 -1.4336 3.9926 14 6 -0.6036 -1.6225 4.7831 15 6 -1.1086 -0.5679 5.5325 16 8 -2.2093 -0.7491 6.3060 17 6 -2.8302 -1.9426 6.2174 18 1 -2.5026 -2.6688 5.4883 19 6 -3.8890 -2.2377 7.0625 20 7 -4.4944 -3.4025 6.9764 21 14 -4.4559 -0.9815 8.3233 22 1 -5.5011 -0.1142 7.7227 23 1 -5.0155 -1.6845 9.5057 24 1 -3.3019 -0.1469 8.7441 25 6 -0.4815 0.6706 5.4935 26 6 0.6346 0.8533 4.7011 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6214 1.4025 -0.9313 32 1 4.3698 2.6613 0.1354 33 1 3.2521 3.4751 1.2563 34 1 5.5944 3.4393 2.1240 35 1 4.4731 2.5513 3.1836 36 1 5.5592 1.6599 2.0907 37 1 2.5972 2.0493 3.0616 38 1 3.6147 -1.0073 4.5060 39 1 4.4911 -0.0131 3.3178 40 1 3.6141 0.7663 4.6564 41 1 0.9034 -2.2520 3.4061 42 1 -1.0864 -2.5880 4.8147 43 1 -5.2355 -3.6088 7.5673 44 1 -0.8691 1.4914 6.0789 45 1 1.1202 1.8173 4.6672 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281660642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:13 Heat of formation + Delta-G solvation = 3.701530 kcal Electronic energy + Delta-G solvation = -23036.031530 eV Core-core repulsion = 19826.180653 eV Total energy + Delta-G solvation = -3209.850877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.40609 -38.43611 -36.62534 -34.23104 -33.31336 -32.27719 -30.26882 -29.87023 -28.28660 -27.57354 -25.26986 -23.84232 -22.52916 -22.08269 -20.55683 -20.06228 -19.50171 -17.78009 -17.22247 -16.03351 -15.66028 -15.00283 -14.81022 -14.64513 -14.03025 -13.81296 -13.77793 -13.65730 -13.47107 -13.26853 -12.92260 -12.66462 -12.60638 -12.33982 -12.20714 -12.03918 -11.96090 -11.51658 -11.34227 -11.18548 -11.12357 -11.01555 -10.74161 -10.62674 -10.47187 -10.37132 -10.09383 -9.34512 -9.11887 -8.81043 -8.26785 -8.14212 -7.20055 -6.37069 -4.03186 2.22866 2.32682 2.53555 3.25637 3.28235 3.43213 4.16918 4.27688 4.55085 4.59326 4.81426 4.88431 4.95251 5.13220 5.14639 5.15722 5.27238 5.28930 5.38054 5.43435 5.57381 5.61094 5.64413 5.67298 5.69989 5.76635 5.81100 5.92097 5.95351 5.98676 6.09821 6.14093 6.21403 6.23980 6.44384 6.65819 6.82304 6.85962 6.98726 7.06586 7.22165 7.37284 7.45951 7.50130 7.69400 7.86035 8.10018 8.98850 9.63163 10.70977 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.003552 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.371297 B = 7880.071697 C = 8346.767729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.150 4.150 3 C -0.079 4.079 4 C 0.091 3.909 5 H 0.053 0.947 6 C -0.136 4.136 7 C -0.157 4.157 8 N -0.671 5.671 9 C 0.142 3.858 10 H 0.076 0.924 11 C -0.177 4.177 12 C -0.151 4.151 13 C -0.070 4.070 14 C -0.219 4.219 15 C 0.158 3.842 16 O -0.221 6.221 17 C -0.387 4.387 18 H 0.105 0.895 19 C 0.062 3.938 20 N -0.883 5.883 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.194 4.194 26 C -0.056 4.056 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.338 0.662 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.278 0.722 44 H 0.113 0.887 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.026 9.730 -11.229 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.168 4.168 3 C -0.117 4.117 4 C -0.019 4.019 5 H 0.071 0.929 6 C -0.174 4.174 7 C -0.214 4.214 8 N -0.303 5.303 9 C 0.032 3.968 10 H 0.094 0.906 11 C -0.236 4.236 12 C -0.153 4.153 13 C -0.088 4.088 14 C -0.239 4.239 15 C 0.106 3.894 16 O -0.126 6.126 17 C -0.462 4.462 18 H 0.122 0.878 19 C -0.141 4.141 20 N -0.521 5.521 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.184 1.184 25 C -0.213 4.213 26 C -0.074 4.074 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.158 0.842 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.148 0.852 43 H 0.088 0.912 44 H 0.131 0.869 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.131 9.610 -11.287 21.908 hybrid contribution 0.462 0.143 0.907 1.028 sum 16.593 9.754 -10.380 21.868 Atomic orbital electron populations 1.23724 0.95947 1.01505 1.00271 1.22629 0.95946 0.97567 1.00651 1.20783 0.98187 0.96226 0.96504 1.21574 0.92582 0.96781 0.90950 0.92885 1.21896 0.97458 0.98579 0.99457 1.21875 0.98791 1.01677 0.99055 1.60621 1.58550 1.05244 1.05864 1.20284 0.91604 0.90879 0.93992 0.90574 1.22565 0.97866 1.02788 1.00331 1.19133 0.99394 0.94244 1.02497 1.20569 0.94858 0.95843 0.97560 1.21213 0.99698 1.00181 1.02759 1.19125 0.86499 0.93281 0.90509 1.83582 1.35119 1.36807 1.57138 1.20750 1.13558 0.91268 1.20664 0.87773 1.24460 0.95574 0.96536 0.97507 1.69653 1.22669 1.20767 1.39011 0.86181 0.79603 0.80939 0.80172 1.19905 1.20912 1.18406 1.20189 0.99605 0.95680 1.05864 1.20290 0.94967 0.97308 0.94859 0.88868 0.89045 0.88513 0.91095 0.91812 0.91466 0.91166 0.92627 0.92520 0.92803 0.84218 0.91966 0.93272 0.92554 0.87778 0.85200 0.91155 0.86866 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 14.32 29.01 0.42 -1.83 16 2 C -0.15 -1.71 8.19 -36.03 -0.30 -2.01 16 3 C -0.08 -0.78 5.34 -27.88 -0.15 -0.93 16 4 C 0.09 0.84 2.02 -67.71 -0.14 0.71 16 5 H 0.05 0.51 7.31 -51.93 -0.38 0.13 16 6 C -0.14 -1.02 5.33 -26.73 -0.14 -1.16 16 7 C -0.16 -1.11 9.50 37.16 0.35 -0.75 16 8 N -0.67 -7.45 5.31 -100.95 -0.54 -7.99 16 9 C 0.14 1.77 2.31 -68.86 -0.16 1.61 16 10 H 0.08 0.98 6.68 -51.93 -0.35 0.63 16 11 C -0.18 -1.93 9.01 37.16 0.33 -1.60 16 12 C -0.15 -2.46 4.96 -104.57 -0.52 -2.98 16 13 C -0.07 -1.27 9.66 -39.61 -0.38 -1.65 16 14 C -0.22 -4.80 9.14 -39.39 -0.36 -5.16 16 15 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 16 O -0.22 -5.95 8.59 0.06 0.00 -5.95 16 17 C -0.39 -11.08 9.90 30.89 0.31 -10.77 16 18 H 0.10 3.05 5.52 -52.49 -0.29 2.76 16 19 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 20 N -0.88 -25.85 13.96 55.48 0.77 -25.08 16 21 Si 0.91 22.03 28.62 -169.99 -4.86 17.17 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.19 -3.92 9.99 -39.40 -0.39 -4.31 16 26 C -0.06 -0.95 9.31 -39.61 -0.37 -1.32 16 27 H 0.09 1.18 7.84 -52.49 -0.41 0.77 16 28 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.10 1.06 8.05 -52.49 -0.42 0.64 16 30 H 0.07 0.76 7.79 -51.93 -0.40 0.35 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.42 6.67 -51.93 -0.35 0.08 16 36 H 0.05 0.38 7.91 -51.93 -0.41 -0.03 16 37 H 0.34 3.50 5.78 -39.29 -0.23 3.27 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.46 7.55 -51.93 -0.39 0.07 16 40 H 0.06 0.61 8.03 -51.93 -0.42 0.19 16 41 H 0.10 1.67 8.03 -52.49 -0.42 1.25 16 42 H 0.13 3.01 5.71 -52.49 -0.30 2.71 16 43 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.11 2.15 8.06 -52.48 -0.42 1.73 16 45 H 0.11 1.57 7.28 -52.49 -0.38 1.19 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -29.31 364.22 -8.24 -37.55 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.25 Total: 5.85 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -1.85 Total: -27.04 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.24 Total: -33.07 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: 0.00 Total: -5.95 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.86 Total: 17.17 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.31 -8.24 -37.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281660642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.247 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds