Wall clock time and date at job start Tue Mar 31 2020 05:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 120.00186 * 2 1 4 4 C 1.53003 * 109.47110 * 124.99630 * 3 2 1 5 5 H 1.08999 * 109.47108 * 54.99687 * 4 3 2 6 6 C 1.53000 * 109.47111 * 175.00129 * 4 3 2 7 7 C 1.52996 * 109.47309 * 185.84203 * 6 4 3 8 8 N 1.46903 * 109.47081 * 294.99947 * 4 3 2 9 9 C 1.46905 * 110.99723 * 105.55403 * 8 4 3 10 10 H 1.08992 * 109.47162 * 326.18572 * 9 8 4 11 11 C 1.53003 * 109.46865 * 86.18269 * 9 8 4 12 12 C 1.50697 * 109.46920 * 206.18047 * 9 8 4 13 13 C 1.38306 * 119.92734 * 139.99962 * 12 9 8 14 14 C 1.38103 * 120.06444 * 180.02562 * 13 12 9 15 15 C 1.38879 * 119.93409 * 0.28140 * 14 13 12 16 16 O 1.35746 * 120.06648 * 179.71941 * 15 14 13 17 17 C 1.34830 * 117.00379 * 354.62559 * 16 15 14 18 18 H 1.07995 * 120.00067 * 354.40794 * 17 16 15 19 19 C 1.38655 * 119.99777 * 174.40130 * 17 16 15 20 20 N 1.31557 * 119.99475 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00390 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47434 * 89.99803 * 21 19 17 23 23 H 1.48501 * 109.47446 * 210.00006 * 21 19 17 24 24 H 1.48503 * 109.47279 * 329.99933 * 21 19 17 25 25 C 1.38879 * 119.85696 * 359.42059 * 15 14 13 26 26 C 1.38096 * 119.93468 * 0.58047 * 25 15 14 27 27 H 1.08001 * 119.99566 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.00214 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99566 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46787 * 4.99969 * 3 2 1 31 31 H 1.08995 * 109.47280 * 244.99679 * 3 2 1 32 32 H 1.08998 * 109.46734 * 305.84282 * 6 4 3 33 33 H 1.08997 * 109.47421 * 65.83950 * 6 4 3 34 34 H 1.09001 * 109.47312 * 177.14722 * 7 6 4 35 35 H 1.09001 * 109.46853 * 297.15169 * 7 6 4 36 36 H 1.09003 * 109.46732 * 57.14992 * 7 6 4 37 37 H 1.00903 * 111.00079 * 229.50328 * 8 4 3 38 38 H 1.09000 * 109.46829 * 174.79439 * 11 9 8 39 39 H 1.08999 * 109.47637 * 294.79827 * 11 9 8 40 40 H 1.09000 * 109.47146 * 54.80440 * 11 9 8 41 41 H 1.07996 * 119.96809 * 0.02562 * 13 12 9 42 42 H 1.08000 * 120.03127 * 179.97438 * 14 13 12 43 43 H 0.97006 * 119.99701 * 180.02562 * 20 19 17 44 44 H 1.08004 * 120.03137 * 180.29765 * 25 15 14 45 45 H 1.07998 * 119.96652 * 179.74428 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 1 3.6826 0.4572 1.1405 6 6 3.8876 2.6016 1.1111 7 6 4.9554 2.5601 2.2061 8 7 2.2765 1.3223 2.4396 9 6 2.3493 0.0056 3.0871 10 1 2.3877 -0.7724 2.3248 11 6 3.6078 -0.0674 3.9541 12 6 1.1315 -0.1972 3.9512 13 6 0.5129 -1.4336 3.9926 14 6 -0.6036 -1.6225 4.7831 15 6 -1.1086 -0.5679 5.5325 16 8 -2.2093 -0.7491 6.3060 17 6 -2.8302 -1.9426 6.2174 18 1 -2.5026 -2.6688 5.4883 19 6 -3.8890 -2.2377 7.0625 20 7 -4.4944 -3.4025 6.9764 21 14 -4.4559 -0.9815 8.3233 22 1 -5.5011 -0.1142 7.7227 23 1 -5.0155 -1.6845 9.5057 24 1 -3.3019 -0.1469 8.7441 25 6 -0.4815 0.6706 5.4935 26 6 0.6346 0.8533 4.7011 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6214 1.4025 -0.9313 32 1 4.3698 2.6613 0.1354 33 1 3.2521 3.4751 1.2563 34 1 5.5944 3.4393 2.1240 35 1 4.4731 2.5513 3.1836 36 1 5.5592 1.6599 2.0907 37 1 2.5972 2.0493 3.0616 38 1 3.6147 -1.0073 4.5060 39 1 4.4911 -0.0131 3.3178 40 1 3.6141 0.7663 4.6564 41 1 0.9034 -2.2520 3.4061 42 1 -1.0864 -2.5880 4.8147 43 1 -5.2355 -3.6088 7.5673 44 1 -0.8691 1.4914 6.0789 45 1 1.1202 1.8173 4.6672 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281660642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:12 Heat of formation + Delta-G solvation = -12.171223 kcal Electronic energy + Delta-G solvation = -23036.719825 eV Core-core repulsion = 19826.180653 eV Total energy + Delta-G solvation = -3210.539171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94951 -39.63925 -38.08027 -35.30200 -34.47949 -34.05112 -31.81419 -30.83007 -29.64014 -28.47610 -27.22862 -24.57092 -23.87277 -23.59950 -21.47654 -21.30952 -20.47274 -19.70285 -19.06708 -16.96785 -16.89323 -16.38498 -15.98452 -15.83473 -15.63445 -15.44200 -15.25266 -14.60743 -14.49259 -14.41212 -14.19966 -14.07619 -13.90690 -13.70556 -13.38124 -13.30593 -12.98017 -12.70720 -12.54695 -12.47882 -12.10619 -12.05252 -11.99895 -11.91985 -11.72288 -11.55871 -11.30924 -11.25082 -10.87450 -10.05673 -9.73569 -9.15491 -8.87851 -8.49320 -6.21211 0.63173 0.73157 1.30851 1.35894 1.51531 1.58401 2.28570 2.77550 3.11209 3.16621 3.36887 3.86732 3.98771 4.12150 4.19058 4.23338 4.30907 4.33988 4.41951 4.44305 4.50972 4.63399 4.68320 4.73685 4.80903 4.90445 4.94269 4.96570 5.00777 5.04586 5.16135 5.20450 5.25240 5.27586 5.30742 5.34136 5.44918 5.52086 5.63411 5.80137 5.85791 5.89760 5.94846 6.05565 6.28808 6.37028 6.68163 6.85480 7.62082 8.62761 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.003552 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.371297 B = 7880.071697 C = 8346.767729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.139 4.139 3 C -0.079 4.079 4 C 0.095 3.905 5 H 0.058 0.942 6 C -0.129 4.129 7 C -0.156 4.156 8 N -0.680 5.680 9 C 0.147 3.853 10 H 0.079 0.921 11 C -0.171 4.171 12 C -0.124 4.124 13 C -0.074 4.074 14 C -0.235 4.235 15 C 0.114 3.886 16 O -0.248 6.248 17 C -0.397 4.397 18 H 0.077 0.923 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.267 1.267 24 H -0.263 1.263 25 C -0.193 4.193 26 C -0.049 4.049 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.346 0.654 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.284 0.716 44 H 0.124 0.876 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.111 12.258 -12.025 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.157 4.157 3 C -0.117 4.117 4 C -0.014 4.014 5 H 0.076 0.924 6 C -0.167 4.167 7 C -0.213 4.213 8 N -0.313 5.313 9 C 0.037 3.963 10 H 0.097 0.903 11 C -0.230 4.230 12 C -0.126 4.126 13 C -0.092 4.092 14 C -0.254 4.254 15 C 0.066 3.934 16 O -0.156 6.156 17 C -0.473 4.473 18 H 0.095 0.905 19 C -0.190 4.190 20 N -0.567 5.567 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.192 1.192 24 H -0.188 1.188 25 C -0.212 4.212 26 C -0.067 4.067 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.167 0.833 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.145 0.855 42 H 0.121 0.879 43 H 0.094 0.906 44 H 0.142 0.858 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 19.258 12.156 -12.111 25.794 hybrid contribution -0.190 -0.569 0.900 1.082 sum 19.067 11.587 -11.211 24.970 Atomic orbital electron populations 1.23715 0.96708 1.00950 1.02720 1.22868 0.95551 0.98798 0.98460 1.20833 0.98201 0.94754 0.97895 1.21570 0.92373 0.98089 0.89398 0.92375 1.21835 0.97245 0.97286 1.00384 1.21866 0.98677 1.02164 0.98606 1.60506 1.59667 1.04474 1.06643 1.20209 0.90269 0.92026 0.93763 0.90337 1.22495 0.97529 1.02594 1.00367 1.19682 0.99358 0.92800 1.00725 1.20833 0.93714 0.97736 0.96936 1.21198 1.01192 0.98978 1.04059 1.19653 0.86960 0.95154 0.91652 1.83514 1.37098 1.35764 1.59265 1.20674 1.14373 0.91727 1.20521 0.90538 1.25290 0.95595 0.98565 0.99521 1.69738 1.23783 1.22581 1.40610 0.85197 0.78946 0.78437 0.77999 1.19034 1.19182 1.18774 1.20512 1.00075 0.94543 1.06111 1.20708 0.93620 0.99057 0.93301 0.89353 0.89990 0.87828 0.91963 0.89772 0.90283 0.91340 0.91893 0.92785 0.92650 0.83348 0.92865 0.91028 0.91935 0.85525 0.87943 0.90629 0.85787 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.03 14.32 67.77 0.97 -4.06 16 2 C -0.14 -2.87 8.19 25.64 0.21 -2.66 16 3 C -0.08 -1.30 5.34 29.85 0.16 -1.14 16 4 C 0.10 1.38 2.02 44.92 0.09 1.47 16 5 H 0.06 0.83 7.31 -2.39 -0.02 0.82 16 6 C -0.13 -1.39 5.33 30.59 0.16 -1.23 16 7 C -0.16 -1.53 9.50 71.98 0.68 -0.85 16 8 N -0.68 -12.40 5.31 -473.30 -2.51 -14.91 16 9 C 0.15 3.13 2.31 44.17 0.10 3.24 16 10 H 0.08 1.71 6.68 -2.39 -0.02 1.70 16 11 C -0.17 -3.02 9.01 71.98 0.65 -2.37 16 12 C -0.12 -3.74 4.96 -19.83 -0.10 -3.84 16 13 C -0.07 -2.64 9.66 22.25 0.21 -2.43 16 14 C -0.23 -10.75 9.14 22.39 0.20 -10.54 16 15 C 0.11 5.55 6.65 22.58 0.15 5.70 16 16 O -0.25 -13.97 8.59 -22.70 -0.19 -14.17 16 17 C -0.40 -24.13 9.90 67.92 0.67 -23.45 16 18 H 0.08 4.90 5.52 -2.91 -0.02 4.89 16 19 C 0.01 0.49 5.49 84.83 0.47 0.95 16 20 N -0.93 -56.63 13.96 21.61 0.30 -56.33 16 21 Si 0.97 46.62 28.62 68.60 1.96 48.58 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 25 C -0.19 -7.64 9.99 22.39 0.22 -7.42 16 26 C -0.05 -1.52 9.31 22.25 0.21 -1.32 16 27 H 0.09 2.22 7.84 -2.91 -0.02 2.20 16 28 H 0.08 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.10 2.00 8.05 -2.91 -0.02 1.98 16 30 H 0.06 1.16 7.79 -2.39 -0.02 1.14 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.05 0.56 6.67 -2.39 -0.02 0.55 16 36 H 0.05 0.54 7.91 -2.39 -0.02 0.52 16 37 H 0.35 5.54 5.78 -89.69 -0.52 5.02 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 0.99 7.55 -2.39 -0.02 0.98 16 40 H 0.06 1.05 8.03 -2.39 -0.02 1.03 16 41 H 0.13 3.91 8.03 -2.91 -0.02 3.89 16 42 H 0.10 5.19 5.71 -2.91 -0.02 5.18 16 43 H 0.28 15.91 8.31 -92.70 -0.77 15.14 16 44 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 45 H 0.15 3.53 7.28 -2.91 -0.02 3.51 16 Total: -1.00 -67.21 364.22 5.07 -62.14 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.44 Total: 24.63 kcal Atomic # 6 Polarization: -55.02 SS G_CDS: 5.07 Total: -49.95 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -2.21 Total: -71.24 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.19 Total: -14.17 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.96 Total: 48.58 kcal Total: -67.21 5.07 -62.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281660642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.973 kcal (2) G-P(sol) polarization free energy of solvation -67.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds