Wall clock time and date at job start Tue Mar 31 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50696 * 119.99882 * 2 1 4 4 C 1.53004 * 109.47361 * 124.99350 * 3 2 1 5 5 H 1.09005 * 109.46707 * 54.99886 * 4 3 2 6 6 C 1.52995 * 109.47092 * 174.99844 * 4 3 2 7 7 C 1.52998 * 109.46869 * 185.83389 * 6 4 3 8 8 N 1.46895 * 109.47151 * 295.00327 * 4 3 2 9 9 C 1.46898 * 110.99918 * 142.50756 * 8 4 3 10 10 H 1.09002 * 109.47432 * 35.02120 * 9 8 4 11 11 C 1.52999 * 109.47526 * 275.01828 * 9 8 4 12 12 C 1.50705 * 109.47101 * 155.01837 * 9 8 4 13 13 C 1.38307 * 119.93049 * 219.99773 * 12 9 8 14 14 C 1.38094 * 120.06768 * 179.97438 * 13 12 9 15 15 C 1.38882 * 119.93339 * 0.02562 * 14 13 12 16 16 O 1.35752 * 120.06848 * 179.97438 * 15 14 13 17 17 C 1.34824 * 117.00025 * 354.46498 * 16 15 14 18 18 H 1.07999 * 120.00131 * 5.08019 * 17 16 15 19 19 C 1.38655 * 119.99793 * 185.07947 * 17 16 15 20 20 N 1.31557 * 120.00187 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00100 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46738 * 89.99857 * 21 19 17 23 23 H 1.48496 * 109.47291 * 209.99799 * 21 19 17 24 24 H 1.48499 * 109.47065 * 330.00581 * 21 19 17 25 25 C 1.38882 * 119.85971 * 0.02562 * 15 14 13 26 26 C 1.38096 * 119.93058 * 0.02562 * 25 15 14 27 27 H 1.08007 * 119.99634 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00188 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99715 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46997 * 4.99613 * 3 2 1 31 31 H 1.08993 * 109.47065 * 244.99663 * 3 2 1 32 32 H 1.08995 * 109.47355 * 305.83456 * 6 4 3 33 33 H 1.09005 * 109.47029 * 65.83470 * 6 4 3 34 34 H 1.08999 * 109.47282 * 178.30899 * 7 6 4 35 35 H 1.09003 * 109.46988 * 298.30288 * 7 6 4 36 36 H 1.09002 * 109.47577 * 58.30335 * 7 6 4 37 37 H 1.00902 * 111.00142 * 18.55358 * 8 4 3 38 38 H 1.09000 * 109.46860 * 59.99489 * 11 9 8 39 39 H 1.08999 * 109.47512 * 180.02562 * 11 9 8 40 40 H 1.09002 * 109.47004 * 300.00555 * 11 9 8 41 41 H 1.08002 * 119.96273 * 0.25697 * 13 12 9 42 42 H 1.07999 * 120.03721 * 180.02562 * 14 13 12 43 43 H 0.96994 * 119.99959 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.03318 * 179.97438 * 25 15 14 45 45 H 1.08000 * 119.96890 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 1 3.6826 0.4574 1.1405 6 6 3.8874 2.6017 1.1111 7 6 4.9550 2.5603 2.2062 8 7 2.2764 1.3224 2.4396 9 6 2.9550 0.5081 3.4566 10 1 4.0343 0.6099 3.3429 11 6 2.5600 -0.9597 3.2817 12 6 2.5481 0.9776 4.8296 13 6 3.4882 1.0482 5.8415 14 6 3.1186 1.4785 7.1006 15 6 1.8011 1.8400 7.3503 16 8 1.4346 2.2629 8.5871 17 6 2.3688 2.2004 9.5572 18 1 3.3790 1.9043 9.3158 19 6 2.0327 2.5162 10.8648 20 7 2.9443 2.4556 11.8113 21 14 0.2856 3.0290 11.2822 22 1 -0.5135 1.8265 11.6296 23 1 0.3060 3.9607 12.4384 24 1 -0.3246 3.7072 10.1105 25 6 0.8592 1.7670 6.3323 26 6 1.2349 1.3349 5.0757 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9313 32 1 4.3699 2.6614 0.1355 33 1 3.2517 3.4752 1.2561 34 1 5.5813 3.4498 2.1370 35 1 4.4724 2.5311 3.1832 36 1 5.5719 1.6707 2.0790 37 1 1.3320 1.0004 2.2896 38 1 2.8543 -1.2992 2.2886 39 1 3.0632 -1.5638 4.0366 40 1 1.4807 -1.0615 3.3954 41 1 4.5135 0.7708 5.6456 42 1 3.8532 1.5338 7.8903 43 1 2.7091 2.6762 12.7261 44 1 -0.1662 2.0471 6.5236 45 1 0.5028 1.2774 4.2837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281660649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:17 Heat of formation + Delta-G solvation = 3.493526 kcal Electronic energy + Delta-G solvation = -22913.835361 eV Core-core repulsion = 19703.975464 eV Total energy + Delta-G solvation = -3209.859897 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.44402 -38.47523 -36.67168 -34.41203 -33.21071 -32.28958 -30.37857 -29.92256 -28.23016 -27.65948 -25.28207 -23.84630 -22.44579 -22.11222 -20.48493 -20.06204 -19.86881 -17.78463 -17.24000 -16.24385 -15.59589 -15.12610 -14.83213 -14.59081 -14.07709 -13.90177 -13.73821 -13.69067 -13.38877 -13.07142 -12.98570 -12.71271 -12.65655 -12.41464 -12.22483 -12.17587 -11.96247 -11.55929 -11.27883 -11.21610 -11.07820 -10.80648 -10.77790 -10.63678 -10.54175 -10.34980 -10.07054 -9.58281 -9.33223 -8.82079 -8.31061 -8.16375 -7.21826 -6.37657 -4.03955 2.00447 2.21049 2.30422 3.24613 3.28089 3.43396 4.16446 4.27265 4.51461 4.58242 4.76273 4.92568 4.92734 5.10575 5.13273 5.17690 5.22361 5.31643 5.34667 5.43430 5.48219 5.57737 5.65660 5.68217 5.75422 5.76514 5.87077 5.90631 5.98694 6.03350 6.16402 6.20997 6.27133 6.36479 6.39469 6.44991 6.49375 6.64399 6.84336 7.04393 7.19919 7.35462 7.44099 7.49851 7.68134 7.85288 8.09087 8.98176 9.62106 10.70302 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025342 B = 0.003356 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.632080 B = 8342.012066 C = 8809.724077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.159 4.159 3 C -0.103 4.103 4 C 0.091 3.909 5 H 0.049 0.951 6 C -0.109 4.109 7 C -0.154 4.154 8 N -0.672 5.672 9 C 0.135 3.865 10 H 0.082 0.918 11 C -0.175 4.175 12 C -0.155 4.155 13 C -0.071 4.071 14 C -0.220 4.220 15 C 0.158 3.842 16 O -0.220 6.220 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.062 3.938 20 N -0.882 5.882 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.194 4.194 26 C -0.056 4.056 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.340 0.660 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.106 0.894 42 H 0.131 0.869 43 H 0.279 0.721 44 H 0.114 0.886 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.832 -4.238 -22.635 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.177 4.177 3 C -0.141 4.141 4 C -0.019 4.019 5 H 0.067 0.933 6 C -0.147 4.147 7 C -0.211 4.211 8 N -0.304 5.304 9 C 0.026 3.974 10 H 0.100 0.900 11 C -0.234 4.234 12 C -0.156 4.156 13 C -0.090 4.090 14 C -0.239 4.239 15 C 0.106 3.894 16 O -0.126 6.126 17 C -0.464 4.464 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.521 5.521 21 Si 0.731 3.269 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.213 4.213 26 C -0.074 4.074 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.160 0.840 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.124 0.876 42 H 0.149 0.851 43 H 0.089 0.911 44 H 0.132 0.868 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.725 -3.512 -22.086 22.375 hybrid contribution -0.700 -0.791 0.097 1.060 sum -1.425 -4.302 -21.989 22.451 Atomic orbital electron populations 1.23907 0.95938 1.01974 1.00874 1.22984 0.96135 0.98470 1.00079 1.21089 0.98714 0.95612 0.98649 1.21543 0.94367 0.97523 0.88490 0.93303 1.21530 0.97118 0.98042 0.98057 1.21832 0.98176 1.00535 1.00592 1.60663 1.05337 1.57022 1.07393 1.20393 0.98226 0.89381 0.89414 0.90036 1.22511 1.02000 0.98017 1.00888 1.19150 0.94084 1.08405 0.93963 1.20589 0.97819 0.98070 0.92475 1.21216 0.96709 1.07976 0.97970 1.19121 0.92484 0.92020 0.85749 1.83571 1.40676 1.73205 1.15130 1.20760 0.92053 1.47501 0.86055 0.87705 1.24456 0.99418 0.96187 0.93977 1.69646 1.33840 1.47115 1.01469 0.86187 0.83323 0.79009 0.78418 1.19951 1.20846 1.18364 1.20201 0.98592 1.09884 0.92624 1.20306 0.95168 0.97248 0.94691 0.88612 0.88374 0.87705 0.90613 0.90535 0.92687 0.91335 0.93334 0.90924 0.93689 0.84042 0.93434 0.92021 0.92503 0.87624 0.85135 0.91136 0.86814 0.87288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.44 14.26 29.01 0.41 -1.02 16 2 C -0.16 -1.24 8.53 -36.03 -0.31 -1.55 16 3 C -0.10 -0.82 5.15 -27.88 -0.14 -0.96 16 4 C 0.09 0.85 2.03 -67.72 -0.14 0.71 16 5 H 0.05 0.47 7.14 -51.93 -0.37 0.10 16 6 C -0.11 -1.06 5.60 -26.73 -0.15 -1.21 16 7 C -0.15 -1.66 8.64 37.16 0.32 -1.34 16 8 N -0.67 -7.59 5.33 -100.95 -0.54 -8.12 16 9 C 0.14 1.70 1.73 -68.86 -0.12 1.58 16 10 H 0.08 1.02 5.66 -51.93 -0.29 0.72 16 11 C -0.18 -1.98 9.12 37.16 0.34 -1.64 16 12 C -0.15 -2.51 4.96 -104.57 -0.52 -3.02 16 13 C -0.07 -1.28 9.66 -39.61 -0.38 -1.66 16 14 C -0.22 -4.77 9.17 -39.40 -0.36 -5.13 16 15 C 0.16 3.69 6.65 -39.10 -0.26 3.43 16 16 O -0.22 -5.91 8.59 0.06 0.00 -5.91 16 17 C -0.39 -11.08 9.95 30.89 0.31 -10.77 16 18 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 20 N -0.88 -25.78 13.96 55.48 0.77 -25.01 16 21 Si 0.90 21.97 28.62 -169.99 -4.86 17.10 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 25 C -0.19 -3.90 9.99 -39.40 -0.39 -4.29 16 26 C -0.06 -0.95 9.31 -39.61 -0.37 -1.32 16 27 H 0.10 0.66 8.06 -52.48 -0.42 0.24 16 28 H 0.10 0.71 7.84 -52.49 -0.41 0.30 16 29 H 0.10 0.80 8.06 -52.49 -0.42 0.37 16 30 H 0.08 0.63 7.79 -51.93 -0.40 0.22 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.95 6.51 -51.93 -0.34 0.61 16 36 H 0.04 0.45 8.03 -51.93 -0.42 0.03 16 37 H 0.34 3.71 6.39 -39.29 -0.25 3.46 16 38 H 0.05 0.46 7.64 -51.93 -0.40 0.07 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 41 H 0.11 1.65 8.03 -52.49 -0.42 1.23 16 42 H 0.13 3.00 5.64 -52.49 -0.30 2.70 16 43 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.11 2.16 8.06 -52.49 -0.42 1.73 16 45 H 0.11 1.59 7.24 -52.49 -0.38 1.21 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -29.01 362.75 -8.23 -37.23 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.21 Total: 5.75 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -1.86 Total: -26.51 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.24 Total: -33.13 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: 0.00 Total: -5.91 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.86 Total: 17.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.01 -8.23 -37.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281660649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.724 kcal (2) G-P(sol) polarization free energy of solvation -29.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds