Wall clock time and date at job start Tue Mar 31 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50696 * 119.99882 * 2 1 4 4 C 1.53004 * 109.47361 * 124.99350 * 3 2 1 5 5 H 1.09005 * 109.46707 * 54.99886 * 4 3 2 6 6 C 1.52995 * 109.47092 * 174.99844 * 4 3 2 7 7 C 1.52998 * 109.46869 * 185.83389 * 6 4 3 8 8 N 1.46895 * 109.47151 * 295.00327 * 4 3 2 9 9 C 1.46898 * 110.99918 * 142.50756 * 8 4 3 10 10 H 1.09002 * 109.47432 * 35.02120 * 9 8 4 11 11 C 1.52999 * 109.47526 * 275.01828 * 9 8 4 12 12 C 1.50705 * 109.47101 * 155.01837 * 9 8 4 13 13 C 1.38307 * 119.93049 * 219.99773 * 12 9 8 14 14 C 1.38094 * 120.06768 * 179.97438 * 13 12 9 15 15 C 1.38882 * 119.93339 * 0.02562 * 14 13 12 16 16 O 1.35752 * 120.06848 * 179.97438 * 15 14 13 17 17 C 1.34824 * 117.00025 * 354.46498 * 16 15 14 18 18 H 1.07999 * 120.00131 * 5.08019 * 17 16 15 19 19 C 1.38655 * 119.99793 * 185.07947 * 17 16 15 20 20 N 1.31557 * 120.00187 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00100 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46738 * 89.99857 * 21 19 17 23 23 H 1.48496 * 109.47291 * 209.99799 * 21 19 17 24 24 H 1.48499 * 109.47065 * 330.00581 * 21 19 17 25 25 C 1.38882 * 119.85971 * 0.02562 * 15 14 13 26 26 C 1.38096 * 119.93058 * 0.02562 * 25 15 14 27 27 H 1.08007 * 119.99634 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00188 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99715 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46997 * 4.99613 * 3 2 1 31 31 H 1.08993 * 109.47065 * 244.99663 * 3 2 1 32 32 H 1.08995 * 109.47355 * 305.83456 * 6 4 3 33 33 H 1.09005 * 109.47029 * 65.83470 * 6 4 3 34 34 H 1.08999 * 109.47282 * 178.30899 * 7 6 4 35 35 H 1.09003 * 109.46988 * 298.30288 * 7 6 4 36 36 H 1.09002 * 109.47577 * 58.30335 * 7 6 4 37 37 H 1.00902 * 111.00142 * 18.55358 * 8 4 3 38 38 H 1.09000 * 109.46860 * 59.99489 * 11 9 8 39 39 H 1.08999 * 109.47512 * 180.02562 * 11 9 8 40 40 H 1.09002 * 109.47004 * 300.00555 * 11 9 8 41 41 H 1.08002 * 119.96273 * 0.25697 * 13 12 9 42 42 H 1.07999 * 120.03721 * 180.02562 * 14 13 12 43 43 H 0.96994 * 119.99959 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.03318 * 179.97438 * 25 15 14 45 45 H 1.08000 * 119.96890 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 1 3.6826 0.4574 1.1405 6 6 3.8874 2.6017 1.1111 7 6 4.9550 2.5603 2.2062 8 7 2.2764 1.3224 2.4396 9 6 2.9550 0.5081 3.4566 10 1 4.0343 0.6099 3.3429 11 6 2.5600 -0.9597 3.2817 12 6 2.5481 0.9776 4.8296 13 6 3.4882 1.0482 5.8415 14 6 3.1186 1.4785 7.1006 15 6 1.8011 1.8400 7.3503 16 8 1.4346 2.2629 8.5871 17 6 2.3688 2.2004 9.5572 18 1 3.3790 1.9043 9.3158 19 6 2.0327 2.5162 10.8648 20 7 2.9443 2.4556 11.8113 21 14 0.2856 3.0290 11.2822 22 1 -0.5135 1.8265 11.6296 23 1 0.3060 3.9607 12.4384 24 1 -0.3246 3.7072 10.1105 25 6 0.8592 1.7670 6.3323 26 6 1.2349 1.3349 5.0757 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9313 32 1 4.3699 2.6614 0.1355 33 1 3.2517 3.4752 1.2561 34 1 5.5813 3.4498 2.1370 35 1 4.4724 2.5311 3.1832 36 1 5.5719 1.6707 2.0790 37 1 1.3320 1.0004 2.2896 38 1 2.8543 -1.2992 2.2886 39 1 3.0632 -1.5638 4.0366 40 1 1.4807 -1.0615 3.3954 41 1 4.5135 0.7708 5.6456 42 1 3.8532 1.5338 7.8903 43 1 2.7091 2.6762 12.7261 44 1 -0.1662 2.0471 6.5236 45 1 0.5028 1.2774 4.2837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281660649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:17 Heat of formation + Delta-G solvation = -12.153751 kcal Electronic energy + Delta-G solvation = -22914.513878 eV Core-core repulsion = 19703.975464 eV Total energy + Delta-G solvation = -3210.538414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.96978 -39.67934 -38.10095 -35.33139 -34.43543 -33.99889 -31.86308 -31.01597 -29.56025 -28.47852 -27.23240 -24.62861 -23.83157 -23.62136 -21.43308 -21.25285 -20.57352 -19.69556 -19.07548 -17.11833 -16.87229 -16.39658 -15.96849 -15.77761 -15.65292 -15.40341 -15.28903 -14.69868 -14.50553 -14.29237 -14.13974 -13.96714 -13.91387 -13.85494 -13.44188 -13.34534 -12.99999 -12.82061 -12.55117 -12.35215 -12.33785 -12.02741 -11.99805 -11.88367 -11.59167 -11.50624 -11.33376 -11.21155 -10.88016 -10.15912 -9.74885 -9.21073 -8.89106 -8.48999 -6.21038 0.62148 0.71548 1.31166 1.35562 1.44692 1.52284 2.28887 2.78037 3.07448 3.18456 3.35923 3.87088 3.98474 4.10383 4.13287 4.21224 4.32044 4.37463 4.42076 4.45401 4.50963 4.62558 4.65072 4.72831 4.77326 4.87640 4.91298 4.96700 5.02683 5.06217 5.11259 5.20185 5.25345 5.27955 5.30259 5.44631 5.45515 5.56704 5.63259 5.79430 5.81441 5.85242 5.92635 5.94751 6.27384 6.35376 6.64566 6.85785 7.62036 8.62941 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025342 B = 0.003356 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.632080 B = 8342.012066 C = 8809.724077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.164 4.164 3 C -0.097 4.097 4 C 0.094 3.906 5 H 0.055 0.945 6 C -0.108 4.108 7 C -0.153 4.153 8 N -0.680 5.680 9 C 0.140 3.860 10 H 0.087 0.913 11 C -0.170 4.170 12 C -0.128 4.128 13 C -0.074 4.074 14 C -0.235 4.235 15 C 0.115 3.885 16 O -0.248 6.248 17 C -0.398 4.398 18 H 0.079 0.921 19 C 0.009 3.991 20 N -0.926 5.926 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.267 1.267 24 H -0.264 1.264 25 C -0.193 4.193 26 C -0.049 4.049 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.344 0.656 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.130 0.870 42 H 0.105 0.895 43 H 0.284 0.716 44 H 0.124 0.876 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.944 -5.001 -26.079 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.182 4.182 3 C -0.135 4.135 4 C -0.015 4.015 5 H 0.073 0.927 6 C -0.146 4.146 7 C -0.210 4.210 8 N -0.313 5.313 9 C 0.031 3.969 10 H 0.105 0.895 11 C -0.229 4.229 12 C -0.129 4.129 13 C -0.092 4.092 14 C -0.254 4.254 15 C 0.067 3.933 16 O -0.156 6.156 17 C -0.474 4.474 18 H 0.097 0.903 19 C -0.189 4.189 20 N -0.567 5.567 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.192 1.192 24 H -0.188 1.188 25 C -0.212 4.212 26 C -0.067 4.067 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.165 0.835 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.148 0.852 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.142 0.858 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.831 -4.287 -25.581 26.002 hybrid contribution -0.257 -0.639 0.794 1.052 sum -2.088 -4.927 -24.787 25.358 Atomic orbital electron populations 1.24020 0.96048 1.02369 1.00469 1.23019 0.96210 0.98512 1.00427 1.21025 0.98382 0.95629 0.98417 1.21542 0.94503 0.97454 0.88006 0.92735 1.21536 0.96735 0.97780 0.98562 1.21807 0.98519 1.01099 0.99613 1.60565 1.05755 1.56746 1.08193 1.20332 0.98697 0.90450 0.87470 0.89487 1.22447 1.02013 0.96413 1.02053 1.19685 0.93287 1.04504 0.95418 1.20863 0.99650 0.97370 0.91318 1.21216 0.95936 1.09211 0.99064 1.19647 0.94003 0.94184 0.85501 1.83509 1.40200 1.75872 1.16027 1.20703 0.91706 1.47819 0.87219 0.90321 1.25278 1.03582 0.96375 0.93679 1.69731 1.35814 1.49101 1.02035 0.85212 0.78215 0.79030 0.78211 1.19017 1.19165 1.18822 1.20510 0.98591 1.09276 0.92835 1.20702 0.96267 0.95592 0.94184 0.88051 0.88292 0.87248 0.90998 0.89292 0.90797 0.92473 0.93256 0.93441 0.92770 0.83534 0.91237 0.92641 0.92382 0.85167 0.87729 0.90621 0.85765 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.30 14.26 67.77 0.97 -1.33 16 2 C -0.16 -1.96 8.53 25.64 0.22 -1.74 16 3 C -0.10 -1.18 5.15 29.85 0.15 -1.03 16 4 C 0.09 1.43 2.03 44.92 0.09 1.52 16 5 H 0.05 0.81 7.14 -2.38 -0.02 0.79 16 6 C -0.11 -1.77 5.60 30.59 0.17 -1.60 16 7 C -0.15 -2.96 8.64 71.98 0.62 -2.34 16 8 N -0.68 -12.95 5.33 -473.31 -2.52 -15.47 16 9 C 0.14 3.05 1.73 44.17 0.08 3.13 16 10 H 0.09 1.88 5.66 -2.39 -0.01 1.86 16 11 C -0.17 -3.19 9.12 71.98 0.66 -2.53 16 12 C -0.13 -3.85 4.96 -19.83 -0.10 -3.95 16 13 C -0.07 -2.60 9.66 22.25 0.21 -2.39 16 14 C -0.23 -10.65 9.17 22.39 0.21 -10.44 16 15 C 0.12 5.56 6.65 22.58 0.15 5.71 16 16 O -0.25 -13.90 8.59 -22.70 -0.19 -14.09 16 17 C -0.40 -24.09 9.95 67.92 0.68 -23.41 16 18 H 0.08 4.99 5.44 -2.91 -0.02 4.98 16 19 C 0.01 0.52 5.49 84.83 0.47 0.99 16 20 N -0.93 -56.38 13.96 21.61 0.30 -56.07 16 21 Si 0.97 46.44 28.62 68.60 1.96 48.41 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 25 C -0.19 -7.62 9.99 22.39 0.22 -7.40 16 26 C -0.05 -1.55 9.31 22.25 0.21 -1.35 16 27 H 0.10 1.09 8.06 -2.91 -0.02 1.06 16 28 H 0.10 1.15 7.84 -2.91 -0.02 1.13 16 29 H 0.11 1.23 8.06 -2.91 -0.02 1.21 16 30 H 0.07 0.96 7.79 -2.39 -0.02 0.94 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 1.15 6.51 -2.39 -0.02 1.13 16 36 H 0.05 0.93 8.03 -2.39 -0.02 0.91 16 37 H 0.34 6.11 6.39 -89.69 -0.57 5.54 16 38 H 0.07 1.04 7.64 -2.39 -0.02 1.02 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 41 H 0.13 3.92 8.03 -2.91 -0.02 3.89 16 42 H 0.10 5.23 5.64 -2.91 -0.02 5.21 16 43 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 44 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 45 H 0.14 3.59 7.24 -2.91 -0.02 3.57 16 Total: -1.00 -66.06 362.75 4.94 -61.12 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.39 Total: 24.27 kcal Atomic # 6 Polarization: -53.16 SS G_CDS: 5.00 Total: -48.16 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -2.22 Total: -71.55 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.19 Total: -14.09 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.96 Total: 48.41 kcal Total: -66.06 4.94 -61.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281660649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.968 kcal (2) G-P(sol) polarization free energy of solvation -66.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds