Wall clock time and date at job start Tue Mar 31 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00422 * 2 1 4 4 C 1.53004 * 109.47025 * 125.00243 * 3 2 1 5 5 H 1.09000 * 109.47041 * 304.99507 * 4 3 2 6 6 C 1.53002 * 109.47080 * 185.00383 * 4 3 2 7 7 C 1.53001 * 109.47513 * 65.71069 * 6 4 3 8 8 N 1.46890 * 109.47475 * 64.99994 * 4 3 2 9 9 C 1.46901 * 111.00081 * 208.71858 * 8 4 3 10 10 H 1.09003 * 109.46952 * 321.64802 * 9 8 4 11 11 C 1.52995 * 109.47543 * 81.64999 * 9 8 4 12 12 C 1.50700 * 109.47155 * 201.64869 * 9 8 4 13 13 C 1.38297 * 119.93101 * 319.72565 * 12 9 8 14 14 C 1.38106 * 120.06822 * 179.72365 * 13 12 9 15 15 C 1.38879 * 119.92853 * 0.54754 * 14 13 12 16 16 O 1.35754 * 120.06715 * 179.74953 * 15 14 13 17 17 C 1.34828 * 116.99983 * 186.17532 * 16 15 14 18 18 H 1.08001 * 119.99714 * 5.38713 * 17 16 15 19 19 C 1.38650 * 120.00143 * 185.38860 * 17 16 15 20 20 N 1.31561 * 119.99850 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00234 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46795 * 60.00171 * 21 19 17 23 23 H 1.48497 * 109.47381 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47371 * 300.00628 * 21 19 17 25 25 C 1.38874 * 119.86230 * 359.72696 * 15 14 13 26 26 C 1.38096 * 119.93159 * 359.97438 * 25 15 14 27 27 H 1.08006 * 119.99352 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00752 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99352 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47453 * 5.00180 * 3 2 1 31 31 H 1.09000 * 109.47379 * 244.99849 * 3 2 1 32 32 H 1.09005 * 109.46568 * 305.71448 * 6 4 3 33 33 H 1.09004 * 109.47289 * 185.71676 * 6 4 3 34 34 H 1.08994 * 109.46774 * 174.66279 * 7 6 4 35 35 H 1.08997 * 109.46722 * 54.66137 * 7 6 4 36 36 H 1.08994 * 109.46936 * 294.66357 * 7 6 4 37 37 H 1.00903 * 111.00097 * 332.67066 * 8 4 3 38 38 H 1.09003 * 109.46818 * 300.00307 * 11 9 8 39 39 H 1.09003 * 109.47157 * 59.99928 * 11 9 8 40 40 H 1.08994 * 109.47552 * 179.97438 * 11 9 8 41 41 H 1.07994 * 119.96822 * 0.02562 * 13 12 9 42 42 H 1.07995 * 120.03417 * 180.27372 * 14 13 12 43 43 H 0.96995 * 119.99984 * 180.02562 * 20 19 17 44 44 H 1.08003 * 120.03152 * 179.97438 * 25 15 14 45 45 H 1.08007 * 119.96462 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 1 2.4884 1.1468 2.1060 6 6 3.7093 2.7044 1.2553 7 6 2.6627 3.7701 1.5866 8 7 4.0574 0.2939 0.9997 9 6 4.5577 -0.1851 2.2952 10 1 4.6396 0.6542 2.9858 11 6 3.5873 -1.2216 2.8651 12 6 5.9134 -0.8159 2.1081 13 6 6.1582 -1.6106 1.0030 14 6 7.4014 -2.1854 0.8258 15 6 8.4027 -1.9740 1.7645 16 8 9.6242 -2.5418 1.5957 17 6 10.5085 -2.4027 2.6040 18 1 10.2039 -1.9353 3.5287 19 6 11.8088 -2.8598 2.4536 20 7 12.1800 -3.4287 1.3269 21 14 13.0342 -2.6664 3.8502 22 1 12.5365 -3.3884 5.0488 23 1 14.3447 -3.2323 3.4409 24 1 13.1952 -1.2257 4.1716 25 6 8.1520 -1.1801 2.8761 26 6 6.9088 -0.6031 3.0444 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5401 -0.9352 0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6214 1.4025 -0.9314 32 1 4.1707 2.9344 0.2949 33 1 4.4739 2.6922 2.0321 34 1 3.1562 4.7309 1.7324 35 1 2.1354 3.4903 2.4985 36 1 1.9510 3.8482 0.7647 37 1 3.7018 -0.4700 0.4446 38 1 2.6066 -0.7654 3.0004 39 1 3.5053 -2.0609 2.1744 40 1 3.9587 -1.5773 3.8261 41 1 5.3779 -1.7779 0.2754 42 1 7.5932 -2.8023 -0.0397 43 1 13.0895 -3.7487 1.2218 44 1 8.9287 -1.0142 3.6081 45 1 6.7133 0.0148 3.9085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281660653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:20 Heat of formation + Delta-G solvation = 0.966328 kcal Electronic energy + Delta-G solvation = -22557.041053 eV Core-core repulsion = 19347.071569 eV Total energy + Delta-G solvation = -3209.969484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.30803 -38.35610 -36.60741 -34.40127 -33.36013 -32.18269 -30.31250 -29.93749 -27.92822 -27.28692 -25.34624 -24.29114 -22.64434 -21.86484 -20.60167 -20.02193 -19.66495 -17.87940 -16.98023 -16.09874 -15.81793 -14.91986 -14.70883 -14.49428 -14.43479 -14.18097 -13.69932 -13.50785 -13.45275 -13.07153 -13.04117 -12.66059 -12.53986 -12.33120 -12.09845 -12.05916 -11.71819 -11.62774 -11.35997 -11.30423 -11.11846 -10.92911 -10.69758 -10.61198 -10.54050 -10.35741 -10.31566 -9.54157 -9.30393 -8.77542 -8.28920 -8.08672 -7.08302 -6.40374 -3.99063 2.03085 2.29939 2.40422 3.15593 3.16553 3.19313 4.00460 4.16395 4.56339 4.63819 4.76911 4.86986 5.06812 5.13033 5.16786 5.19088 5.26833 5.35410 5.37303 5.38498 5.48053 5.52594 5.61856 5.70760 5.74052 5.82154 5.87166 5.91423 5.95617 6.03866 6.10422 6.19608 6.27290 6.31352 6.39420 6.49008 6.51914 6.77919 6.94415 7.11231 7.14282 7.36370 7.49259 7.50057 7.52057 7.90522 8.04846 9.05420 9.77263 10.77942 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028626 B = 0.002960 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.899575 B = 9456.690493 C = 9835.420579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C -0.101 4.101 4 C 0.092 3.908 5 H 0.045 0.955 6 C -0.113 4.113 7 C -0.153 4.153 8 N -0.676 5.676 9 C 0.141 3.859 10 H 0.075 0.925 11 C -0.176 4.176 12 C -0.164 4.164 13 C -0.055 4.055 14 C -0.194 4.194 15 C 0.153 3.847 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.090 0.910 19 C 0.038 3.962 20 N -0.865 5.865 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.232 4.232 26 C -0.069 4.069 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.339 0.661 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.270 0.730 44 H 0.125 0.875 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.048 9.109 0.722 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.172 4.172 3 C -0.138 4.138 4 C -0.017 4.017 5 H 0.063 0.937 6 C -0.152 4.152 7 C -0.211 4.211 8 N -0.307 5.307 9 C 0.032 3.968 10 H 0.094 0.906 11 C -0.235 4.235 12 C -0.166 4.166 13 C -0.073 4.073 14 C -0.213 4.213 15 C 0.099 3.901 16 O -0.084 6.084 17 C -0.467 4.467 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.500 5.500 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.251 4.251 26 C -0.087 4.087 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.159 0.841 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.216 9.319 0.342 21.359 hybrid contribution -0.090 -0.474 1.055 1.160 sum -19.305 8.845 1.398 21.281 Atomic orbital electron populations 1.23817 0.95919 1.01691 1.01917 1.23022 0.96124 0.98761 0.99272 1.21058 0.97960 0.95281 0.99521 1.21513 0.90797 0.92826 0.96602 0.93710 1.21532 0.97897 0.93068 1.02674 1.21831 0.99228 0.98861 1.01160 1.60676 1.38051 1.15274 1.16733 1.20213 0.91687 0.95221 0.89687 0.90646 1.22506 0.98899 0.99885 1.02231 1.19063 0.94871 1.04595 0.98045 1.20290 0.95247 0.95709 0.96073 1.20196 0.92704 1.07296 1.01135 1.19392 0.86946 0.90745 0.92997 1.83992 1.18088 1.64576 1.41744 1.21248 0.90614 1.41453 0.93366 0.89266 1.25268 0.96795 0.96389 0.98090 1.70030 1.18950 1.36556 1.24455 0.85804 0.79065 0.78925 0.79766 1.19561 1.20313 1.19546 1.21106 0.98121 1.04686 1.01227 1.20538 0.92588 0.98157 0.97456 0.88720 0.88653 0.87456 0.90746 0.90019 0.91334 0.91698 0.92752 0.93067 0.92819 0.84102 0.93370 0.92553 0.91972 0.87524 0.86769 0.92044 0.85739 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 14.32 29.02 0.42 -1.10 16 2 C -0.15 -1.30 9.01 -36.03 -0.32 -1.62 16 3 C -0.10 -0.86 5.10 -27.88 -0.14 -1.00 16 4 C 0.09 0.92 1.88 -67.71 -0.13 0.79 16 5 H 0.04 0.46 6.88 -51.93 -0.36 0.10 16 6 C -0.11 -1.14 5.65 -26.73 -0.15 -1.29 16 7 C -0.15 -1.23 9.56 37.16 0.36 -0.88 16 8 N -0.68 -8.04 5.59 -100.96 -0.56 -8.60 16 9 C 0.14 1.86 2.61 -68.87 -0.18 1.68 16 10 H 0.08 0.99 7.24 -51.93 -0.38 0.62 16 11 C -0.18 -2.06 9.12 37.15 0.34 -1.72 16 12 C -0.16 -2.79 4.96 -104.58 -0.52 -3.31 16 13 C -0.05 -0.98 9.31 -39.61 -0.37 -1.35 16 14 C -0.19 -4.17 9.99 -39.39 -0.39 -4.57 16 15 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 16 O -0.18 -5.24 9.76 0.04 0.00 -5.24 16 17 C -0.39 -11.07 9.44 30.88 0.29 -10.78 16 18 H 0.09 2.34 5.30 -52.49 -0.28 2.06 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 21 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 C -0.23 -5.12 9.13 -39.40 -0.36 -5.48 16 26 C -0.07 -1.27 9.66 -39.61 -0.38 -1.65 16 27 H 0.09 0.65 7.84 -52.48 -0.41 0.24 16 28 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.11 0.92 6.98 -52.48 -0.37 0.55 16 30 H 0.07 0.57 6.14 -51.93 -0.32 0.25 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.74 7.63 -51.93 -0.40 0.34 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.39 6.74 -51.93 -0.35 0.04 16 37 H 0.34 3.81 5.71 -39.29 -0.22 3.58 16 38 H 0.05 0.50 7.23 -51.93 -0.38 0.12 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.11 1.63 7.14 -52.49 -0.37 1.25 16 42 H 0.11 2.39 8.06 -52.49 -0.42 1.96 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.12 2.76 5.72 -52.48 -0.30 2.46 16 45 H 0.10 1.64 8.03 -52.48 -0.42 1.22 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -30.19 363.63 -8.32 -38.51 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.07 Total: 6.87 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -1.90 Total: -27.82 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.19 Total: -33.55 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: 0.00 Total: -5.24 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.19 -8.32 -38.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281660653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.472 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds