Wall clock time and date at job start Tue Mar 31 2020 05:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00422 * 2 1 4 4 C 1.53004 * 109.47025 * 125.00243 * 3 2 1 5 5 H 1.09000 * 109.47041 * 304.99507 * 4 3 2 6 6 C 1.53002 * 109.47080 * 185.00383 * 4 3 2 7 7 C 1.53001 * 109.47513 * 65.71069 * 6 4 3 8 8 N 1.46890 * 109.47475 * 64.99994 * 4 3 2 9 9 C 1.46901 * 111.00081 * 208.71858 * 8 4 3 10 10 H 1.09003 * 109.46952 * 321.64802 * 9 8 4 11 11 C 1.52995 * 109.47543 * 81.64999 * 9 8 4 12 12 C 1.50700 * 109.47155 * 201.64869 * 9 8 4 13 13 C 1.38297 * 119.93101 * 319.72565 * 12 9 8 14 14 C 1.38106 * 120.06822 * 179.72365 * 13 12 9 15 15 C 1.38879 * 119.92853 * 0.54754 * 14 13 12 16 16 O 1.35754 * 120.06715 * 179.74953 * 15 14 13 17 17 C 1.34828 * 116.99983 * 186.17532 * 16 15 14 18 18 H 1.08001 * 119.99714 * 5.38713 * 17 16 15 19 19 C 1.38650 * 120.00143 * 185.38860 * 17 16 15 20 20 N 1.31561 * 119.99850 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00234 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46795 * 60.00171 * 21 19 17 23 23 H 1.48497 * 109.47381 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47371 * 300.00628 * 21 19 17 25 25 C 1.38874 * 119.86230 * 359.72696 * 15 14 13 26 26 C 1.38096 * 119.93159 * 359.97438 * 25 15 14 27 27 H 1.08006 * 119.99352 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00752 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99352 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47453 * 5.00180 * 3 2 1 31 31 H 1.09000 * 109.47379 * 244.99849 * 3 2 1 32 32 H 1.09005 * 109.46568 * 305.71448 * 6 4 3 33 33 H 1.09004 * 109.47289 * 185.71676 * 6 4 3 34 34 H 1.08994 * 109.46774 * 174.66279 * 7 6 4 35 35 H 1.08997 * 109.46722 * 54.66137 * 7 6 4 36 36 H 1.08994 * 109.46936 * 294.66357 * 7 6 4 37 37 H 1.00903 * 111.00097 * 332.67066 * 8 4 3 38 38 H 1.09003 * 109.46818 * 300.00307 * 11 9 8 39 39 H 1.09003 * 109.47157 * 59.99928 * 11 9 8 40 40 H 1.08994 * 109.47552 * 179.97438 * 11 9 8 41 41 H 1.07994 * 119.96822 * 0.02562 * 13 12 9 42 42 H 1.07995 * 120.03417 * 180.27372 * 14 13 12 43 43 H 0.96995 * 119.99984 * 180.02562 * 20 19 17 44 44 H 1.08003 * 120.03152 * 179.97438 * 25 15 14 45 45 H 1.08007 * 119.96462 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 1 2.4884 1.1468 2.1060 6 6 3.7093 2.7044 1.2553 7 6 2.6627 3.7701 1.5866 8 7 4.0574 0.2939 0.9997 9 6 4.5577 -0.1851 2.2952 10 1 4.6396 0.6542 2.9858 11 6 3.5873 -1.2216 2.8651 12 6 5.9134 -0.8159 2.1081 13 6 6.1582 -1.6106 1.0030 14 6 7.4014 -2.1854 0.8258 15 6 8.4027 -1.9740 1.7645 16 8 9.6242 -2.5418 1.5957 17 6 10.5085 -2.4027 2.6040 18 1 10.2039 -1.9353 3.5287 19 6 11.8088 -2.8598 2.4536 20 7 12.1800 -3.4287 1.3269 21 14 13.0342 -2.6664 3.8502 22 1 12.5365 -3.3884 5.0488 23 1 14.3447 -3.2323 3.4409 24 1 13.1952 -1.2257 4.1716 25 6 8.1520 -1.1801 2.8761 26 6 6.9088 -0.6031 3.0444 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5401 -0.9352 0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6214 1.4025 -0.9314 32 1 4.1707 2.9344 0.2949 33 1 4.4739 2.6922 2.0321 34 1 3.1562 4.7309 1.7324 35 1 2.1354 3.4903 2.4985 36 1 1.9510 3.8482 0.7647 37 1 3.7018 -0.4700 0.4446 38 1 2.6066 -0.7654 3.0004 39 1 3.5053 -2.0609 2.1744 40 1 3.9587 -1.5773 3.8261 41 1 5.3779 -1.7779 0.2754 42 1 7.5932 -2.8023 -0.0397 43 1 13.0895 -3.7487 1.2218 44 1 8.9287 -1.0142 3.6081 45 1 6.7133 0.0148 3.9085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281660653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:19 Heat of formation + Delta-G solvation = -15.990347 kcal Electronic energy + Delta-G solvation = -22557.776350 eV Core-core repulsion = 19347.071569 eV Total energy + Delta-G solvation = -3210.704781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86374 -39.58145 -38.08653 -35.46197 -34.28297 -34.00741 -31.82517 -31.10486 -29.33052 -28.05727 -27.33661 -25.03341 -24.05055 -23.44809 -21.51461 -21.30082 -20.38711 -19.72263 -18.80981 -17.18602 -16.80788 -16.33441 -16.04389 -15.83934 -15.57989 -15.45481 -15.09324 -15.00469 -14.65148 -14.26792 -14.15439 -13.96099 -13.69944 -13.51426 -13.35677 -13.14121 -12.84255 -12.78659 -12.56507 -12.43126 -12.27336 -12.16620 -12.08283 -11.96602 -11.70762 -11.49453 -11.35499 -11.15017 -10.75959 -10.15963 -9.72628 -9.23934 -8.82301 -8.45541 -6.13395 0.64779 0.76304 1.34745 1.43490 1.45863 1.51205 2.18943 2.83527 3.15170 3.33927 3.55261 3.89007 3.96100 4.07622 4.14604 4.20028 4.24562 4.40392 4.41124 4.44951 4.48517 4.62313 4.63253 4.68386 4.74073 4.82897 4.91293 4.97017 5.00151 5.09335 5.13322 5.17799 5.22251 5.27109 5.28187 5.33580 5.40204 5.50666 5.64580 5.75601 5.79669 5.83305 5.91004 6.05011 6.25151 6.33199 6.59686 6.99254 7.81973 8.77963 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028626 B = 0.002960 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.899575 B = 9456.690493 C = 9835.420579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C -0.094 4.094 4 C 0.097 3.903 5 H 0.050 0.950 6 C -0.113 4.113 7 C -0.148 4.148 8 N -0.686 5.686 9 C 0.146 3.854 10 H 0.083 0.917 11 C -0.170 4.170 12 C -0.138 4.138 13 C -0.048 4.048 14 C -0.206 4.206 15 C 0.109 3.891 16 O -0.235 6.235 17 C -0.412 4.412 18 H 0.099 0.901 19 C -0.024 4.024 20 N -0.923 5.923 21 Si 1.018 2.982 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.258 1.258 25 C -0.241 4.241 26 C -0.070 4.070 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.344 0.656 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.140 0.860 42 H 0.109 0.891 43 H 0.272 0.728 44 H 0.116 0.884 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.052 10.741 2.041 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.186 4.186 3 C -0.131 4.131 4 C -0.012 4.012 5 H 0.068 0.932 6 C -0.152 4.152 7 C -0.206 4.206 8 N -0.318 5.318 9 C 0.036 3.964 10 H 0.101 0.899 11 C -0.229 4.229 12 C -0.140 4.140 13 C -0.066 4.066 14 C -0.225 4.225 15 C 0.060 3.940 16 O -0.142 6.142 17 C -0.489 4.489 18 H 0.117 0.883 19 C -0.221 4.221 20 N -0.561 5.561 21 Si 0.837 3.163 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.260 4.260 26 C -0.088 4.088 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.165 0.835 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.158 0.842 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.288 10.975 1.663 24.899 hybrid contribution 0.456 -0.853 0.580 1.128 sum -21.832 10.122 2.243 24.168 Atomic orbital electron populations 1.23987 0.95773 1.02492 1.00495 1.23019 0.96440 0.98546 1.00560 1.20989 0.97742 0.95941 0.98477 1.21512 0.90436 0.91801 0.97455 0.93245 1.21524 0.98147 0.93948 1.01565 1.21791 0.98840 0.98195 1.01792 1.60595 1.39382 1.15886 1.15984 1.20160 0.89709 0.95734 0.90768 0.89867 1.22429 0.99286 0.99364 1.01851 1.19630 0.96334 1.01886 0.96115 1.20641 0.94377 0.94570 0.96986 1.20453 0.93615 1.07775 1.00656 1.19923 0.86486 0.92530 0.95106 1.83947 1.19930 1.67451 1.42899 1.21750 0.91265 1.41814 0.94029 0.88329 1.26586 0.98636 0.95724 1.01189 1.70183 1.19654 1.39015 1.27273 0.84661 0.75973 0.79558 0.76100 1.18158 1.19586 1.18188 1.21204 0.99586 1.04852 1.00358 1.20908 0.91308 0.97703 0.98879 0.87829 0.88041 0.87675 0.89538 0.90710 0.92395 0.93197 0.92582 0.92517 0.91777 0.83542 0.91386 0.92489 0.92303 0.84238 0.87246 0.91882 0.86609 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 14.32 67.78 0.97 -1.36 16 2 C -0.17 -2.32 9.01 25.65 0.23 -2.09 16 3 C -0.09 -1.32 5.10 29.85 0.15 -1.17 16 4 C 0.10 1.62 1.88 44.92 0.08 1.71 16 5 H 0.05 0.81 6.88 -2.39 -0.02 0.80 16 6 C -0.11 -2.00 5.65 30.60 0.17 -1.83 16 7 C -0.15 -1.97 9.56 71.98 0.69 -1.28 16 8 N -0.69 -14.19 5.59 -473.32 -2.64 -16.84 16 9 C 0.15 3.35 2.61 44.17 0.12 3.46 16 10 H 0.08 1.86 7.24 -2.39 -0.02 1.85 16 11 C -0.17 -3.34 9.12 71.98 0.66 -2.68 16 12 C -0.14 -4.36 4.96 -19.83 -0.10 -4.46 16 13 C -0.05 -1.63 9.31 22.25 0.21 -1.43 16 14 C -0.21 -9.06 9.99 22.39 0.22 -8.83 16 15 C 0.11 5.62 6.65 22.58 0.15 5.77 16 16 O -0.24 -14.58 9.76 -22.77 -0.22 -14.80 16 17 C -0.41 -24.62 9.44 67.92 0.64 -23.98 16 18 H 0.10 5.41 5.30 -2.91 -0.02 5.39 16 19 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 20 N -0.92 -57.82 13.67 21.61 0.30 -57.52 16 21 Si 1.02 43.66 29.55 68.60 2.03 45.69 16 22 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 25 C -0.24 -10.81 9.13 22.39 0.20 -10.60 16 26 C -0.07 -2.46 9.66 22.25 0.21 -2.24 16 27 H 0.10 1.07 7.84 -2.91 -0.02 1.05 16 28 H 0.10 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.11 1.49 6.98 -2.91 -0.02 1.47 16 30 H 0.09 1.02 6.14 -2.39 -0.01 1.00 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.05 1.02 7.63 -2.38 -0.02 1.00 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.72 6.74 -2.39 -0.02 0.70 16 37 H 0.34 6.59 5.71 -89.69 -0.51 6.08 16 38 H 0.07 1.11 7.23 -2.39 -0.02 1.09 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.14 3.87 7.14 -2.91 -0.02 3.85 16 42 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 43 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 44 H 0.12 5.30 5.72 -2.91 -0.02 5.28 16 45 H 0.14 3.91 8.03 -2.91 -0.02 3.89 16 Total: -1.00 -70.05 363.63 4.99 -65.06 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.46 Total: 30.36 kcal Atomic # 6 Polarization: -57.03 SS G_CDS: 5.08 Total: -51.95 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -2.35 Total: -74.36 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.22 Total: -14.80 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -70.05 4.99 -65.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281660653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.071 kcal (2) G-P(sol) polarization free energy of solvation -70.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds