Wall clock time and date at job start Tue Mar 31 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46707 * 145.50305 * 3 2 1 5 5 C 1.37093 * 120.00174 * 275.24154 * 4 3 2 6 6 H 1.07998 * 120.00236 * 201.22493 * 5 4 3 7 7 C 1.38952 * 120.00096 * 21.23230 * 5 4 3 8 8 N 1.31416 * 119.99513 * 338.04061 * 7 5 4 9 9 Si 1.86794 * 120.00309 * 158.04292 * 7 5 4 10 10 H 1.48502 * 109.47107 * 59.99677 * 9 7 5 11 11 H 1.48498 * 109.47290 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47075 * 300.00094 * 9 7 5 13 13 C 1.34780 * 119.99614 * 95.52116 * 4 3 2 14 14 O 1.21292 * 120.00351 * 4.73850 * 13 4 3 15 15 C 1.50706 * 119.99570 * 184.74296 * 13 4 3 16 16 H 1.08991 * 109.47279 * 43.44343 * 15 13 4 17 17 C 1.52994 * 109.46858 * 283.44157 * 15 13 4 18 18 C 1.53008 * 109.47187 * 299.99854 * 17 15 13 19 19 C 1.52989 * 109.47436 * 300.00413 * 18 17 15 20 20 C 1.53007 * 109.47083 * 59.99671 * 19 18 17 21 21 H 1.09002 * 109.46758 * 60.00501 * 20 19 18 22 22 C 1.53001 * 109.46832 * 180.02562 * 20 19 18 23 23 C 1.52999 * 109.46815 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47057 * 299.99723 * 23 22 20 25 25 C 1.53005 * 109.46752 * 60.00298 * 24 23 22 26 26 C 1.52995 * 109.47013 * 300.00057 * 20 19 18 27 27 H 1.09001 * 109.47359 * 299.99454 * 26 20 19 28 28 H 4.40642 * 5.51427 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.47192 * 25.50474 * 3 2 1 30 30 H 1.08996 * 109.47223 * 265.50100 * 3 2 1 31 31 H 0.97005 * 119.99330 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47341 * 60.00279 * 17 15 13 33 33 H 1.08999 * 109.46987 * 180.02562 * 17 15 13 34 34 H 1.08999 * 109.46562 * 60.00469 * 18 17 15 35 35 H 1.09001 * 109.47061 * 180.02562 * 18 17 15 36 36 H 1.08998 * 109.47488 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47423 * 300.00134 * 19 18 17 38 38 H 1.08998 * 109.47547 * 300.00066 * 22 20 19 39 39 H 1.08999 * 109.47483 * 59.99975 * 22 20 19 40 40 H 1.09000 * 109.47450 * 60.00168 * 23 22 20 41 41 H 1.09006 * 109.47133 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.47046 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.46990 * 300.00103 * 24 23 22 44 44 H 1.09000 * 109.47023 * 60.00004 * 25 24 23 45 45 H 1.08999 * 109.46540 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1393 -0.7823 5 6 3.2600 1.0322 -2.1432 6 1 3.9165 1.7017 -2.6790 7 6 2.5432 0.0623 -2.8333 8 7 2.0991 -1.0007 -2.2009 9 14 2.2109 0.2692 -4.6597 10 1 3.5005 0.3506 -5.3914 11 1 1.4332 -0.8943 -5.1563 12 1 1.4353 1.5156 -4.8836 13 6 3.4637 2.2902 -0.1634 14 8 3.4391 2.3563 1.0475 15 6 3.8630 3.4950 -0.9759 16 1 3.1874 3.6011 -1.8245 17 6 5.2952 3.3158 -1.4834 18 6 6.2436 3.1670 -0.2921 19 6 6.1653 4.4202 0.5819 20 6 4.7330 4.5993 1.0895 21 1 4.4442 3.7279 1.6772 22 6 4.6546 5.8530 1.9630 23 6 3.2226 6.0317 2.4711 24 6 2.2736 6.1799 1.2801 25 6 2.3521 4.9261 0.4065 26 6 3.7847 4.7483 -0.1018 27 1 4.0735 5.6197 -0.6894 28 1 -1.0502 -0.0004 0.0001 29 1 3.0098 -0.9267 -0.4425 30 1 3.0093 0.0814 1.0244 31 1 1.5984 -1.6776 -2.6826 32 1 5.3510 2.4230 -2.1061 33 1 5.5842 4.1874 -2.0707 34 1 5.9547 2.2956 0.2955 35 1 7.2640 3.0398 -0.6537 36 1 6.8406 4.3140 1.4309 37 1 6.4541 5.2916 -0.0057 38 1 5.3303 5.7474 2.8118 39 1 4.9433 6.7242 1.3751 40 1 2.9342 5.1605 3.0593 41 1 3.1667 6.9247 3.0938 42 1 1.2533 6.3068 1.6420 43 1 2.5620 7.0511 0.6920 44 1 2.0638 4.0549 0.9947 45 1 1.6758 5.0315 -0.4417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285943142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:29 Heat of formation + Delta-G solvation = 4.509844 kcal Electronic energy + Delta-G solvation = -25025.519254 eV Core-core repulsion = 21815.703428 eV Total energy + Delta-G solvation = -3209.815826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.25767 -37.67983 -35.14560 -34.81793 -32.14533 -31.74202 -31.26149 -29.51660 -28.37190 -26.37315 -24.75509 -23.01554 -21.91058 -21.44493 -20.04452 -19.32353 -18.75776 -17.53744 -16.48820 -15.90565 -14.87939 -14.53283 -14.45391 -14.23802 -14.03020 -13.75924 -13.51125 -13.34876 -13.08156 -12.75344 -12.11703 -12.00658 -11.84476 -11.69946 -11.46400 -11.26216 -11.17708 -11.07264 -10.99005 -10.67105 -10.57112 -10.48828 -10.39751 -10.15870 -10.00364 -9.94561 -9.54529 -9.20456 -9.14817 -9.07285 -8.61477 -7.96151 -7.90569 -6.39107 -3.95195 3.09581 3.19680 3.20465 3.75822 3.92986 4.12065 4.24045 4.91442 5.00415 5.04443 5.16032 5.21722 5.47253 5.51330 5.60292 5.61485 5.70595 5.79494 5.90751 5.94899 6.00791 6.06487 6.10162 6.12862 6.18924 6.25593 6.28517 6.40003 6.46046 6.49340 6.56519 6.60768 6.61893 6.76575 6.82585 6.85772 6.86932 6.97795 7.01354 7.13472 7.22061 7.34737 7.46960 7.80353 8.37406 8.91107 9.05966 9.49837 9.90908 10.56116 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.006197 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.445038 B = 4517.084759 C = 5018.347493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.092 4.092 3 C 0.223 3.777 4 N -0.441 5.441 5 C -0.347 4.347 6 H 0.106 0.894 7 C 0.048 3.952 8 N -0.853 5.853 9 Si 0.910 3.090 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.476 3.524 14 O -0.594 6.594 15 C -0.087 4.087 16 H 0.085 0.915 17 C -0.111 4.111 18 C -0.117 4.117 19 C -0.107 4.107 20 C -0.107 4.107 21 H 0.126 0.874 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.113 4.113 25 C -0.120 4.120 26 C -0.052 4.052 27 H 0.056 0.944 28 H 0.197 0.803 29 H 0.130 0.870 30 H 0.065 0.935 31 H 0.270 0.730 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.604 8.610 2.535 9.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.094 4.094 3 C 0.101 3.899 4 N -0.158 5.158 5 C -0.474 4.474 6 H 0.123 0.877 7 C -0.158 4.158 8 N -0.490 5.490 9 Si 0.736 3.264 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.266 3.734 14 O -0.482 6.482 15 C -0.108 4.108 16 H 0.103 0.897 17 C -0.148 4.148 18 C -0.154 4.154 19 C -0.144 4.144 20 C -0.124 4.124 21 H 0.143 0.857 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.151 4.151 25 C -0.158 4.158 26 C -0.070 4.070 27 H 0.074 0.926 28 H 0.214 0.786 29 H 0.147 0.853 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.510 8.409 3.054 9.610 hybrid contribution -0.620 0.000 -1.331 1.468 sum 2.890 8.410 1.723 9.058 Atomic orbital electron populations 1.24251 0.95419 1.04548 1.06935 1.23496 0.94617 0.96499 0.94752 1.18547 0.83678 0.92984 0.94710 1.43697 1.55900 1.09230 1.07000 1.19649 1.26943 1.19510 0.81271 0.87665 1.25283 0.95492 0.94883 1.00136 1.69976 1.34909 1.07180 1.36949 0.86273 0.78901 0.78173 0.83071 1.19797 1.20930 1.19860 1.20014 0.81738 0.83966 0.87709 1.90324 1.59832 1.83545 1.14451 1.21061 0.97545 0.93736 0.98434 0.89727 1.21546 0.93581 1.02105 0.97608 1.21495 0.98255 0.98698 0.96995 1.21513 0.97148 0.97309 0.98450 1.21738 0.93548 1.00135 0.97002 0.85659 1.21548 0.96034 0.98205 0.98877 1.21480 0.95527 1.00839 0.97452 1.21474 0.98564 0.98128 0.96890 1.21684 0.96364 0.98612 0.99111 1.20835 0.95143 0.95520 0.95540 0.92558 0.78631 0.85260 0.91735 0.91874 0.90368 0.92523 0.91529 0.93026 0.93068 0.93354 0.92954 0.93305 0.91803 0.93245 0.92905 0.92956 0.89916 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.58 19.25 29.55 0.57 -6.01 16 2 C -0.09 -2.24 11.49 -37.12 -0.43 -2.67 16 3 C 0.22 5.38 5.32 -6.83 -0.04 5.35 16 4 N -0.44 -10.60 2.60 -117.93 -0.31 -10.91 16 5 C -0.35 -8.38 8.47 -14.93 -0.13 -8.51 16 6 H 0.11 2.39 4.89 -52.49 -0.26 2.14 16 7 C 0.05 1.17 5.25 -17.46 -0.09 1.08 16 8 N -0.85 -21.45 8.60 55.50 0.48 -20.97 16 9 Si 0.91 19.22 29.61 -169.99 -5.03 14.18 16 10 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.48 10.63 4.96 -10.98 -0.05 10.58 16 14 O -0.59 -14.00 11.04 5.55 0.06 -13.93 16 15 C -0.09 -1.65 1.71 -91.77 -0.16 -1.80 16 16 H 0.08 1.68 7.53 -51.93 -0.39 1.29 16 17 C -0.11 -1.89 5.16 -26.73 -0.14 -2.03 16 18 C -0.12 -1.92 5.70 -26.73 -0.15 -2.07 16 19 C -0.11 -1.61 5.20 -26.73 -0.14 -1.75 16 20 C -0.11 -1.76 1.71 -90.62 -0.15 -1.91 16 21 H 0.13 2.49 4.99 -51.93 -0.26 2.23 16 22 C -0.11 -1.55 5.20 -26.73 -0.14 -1.69 16 23 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 24 C -0.11 -1.63 5.92 -26.73 -0.16 -1.79 16 25 C -0.12 -2.08 4.91 -26.70 -0.13 -2.21 16 26 C -0.05 -0.88 1.74 -90.60 -0.16 -1.03 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.20 3.61 7.80 -54.08 -0.42 3.19 16 29 H 0.13 3.24 6.13 -51.93 -0.32 2.92 16 30 H 0.06 1.52 7.21 -51.93 -0.37 1.15 16 31 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 32 H 0.08 1.43 5.85 -51.93 -0.30 1.13 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.26 7.12 -51.93 -0.37 0.89 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.69 6.14 -51.93 -0.32 1.37 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 334.78 15.07 5.05 5.05 Total: -1.00 -25.92 334.78 -8.63 -34.55 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -7.22 Total: 10.29 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.65 Total: -18.26 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.17 Total: -31.88 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.06 Total: -13.93 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -25.92 -8.63 -34.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285943142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.064 kcal (2) G-P(sol) polarization free energy of solvation -25.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds