Wall clock time and date at job start Tue Mar 31 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46707 * 145.50305 * 3 2 1 5 5 C 1.37093 * 120.00174 * 275.24154 * 4 3 2 6 6 H 1.07998 * 120.00236 * 201.22493 * 5 4 3 7 7 C 1.38952 * 120.00096 * 21.23230 * 5 4 3 8 8 N 1.31416 * 119.99513 * 338.04061 * 7 5 4 9 9 Si 1.86794 * 120.00309 * 158.04292 * 7 5 4 10 10 H 1.48502 * 109.47107 * 59.99677 * 9 7 5 11 11 H 1.48498 * 109.47290 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47075 * 300.00094 * 9 7 5 13 13 C 1.34780 * 119.99614 * 95.52116 * 4 3 2 14 14 O 1.21292 * 120.00351 * 4.73850 * 13 4 3 15 15 C 1.50706 * 119.99570 * 184.74296 * 13 4 3 16 16 H 1.08991 * 109.47279 * 43.44343 * 15 13 4 17 17 C 1.52994 * 109.46858 * 283.44157 * 15 13 4 18 18 C 1.53008 * 109.47187 * 299.99854 * 17 15 13 19 19 C 1.52989 * 109.47436 * 300.00413 * 18 17 15 20 20 C 1.53007 * 109.47083 * 59.99671 * 19 18 17 21 21 H 1.09002 * 109.46758 * 60.00501 * 20 19 18 22 22 C 1.53001 * 109.46832 * 180.02562 * 20 19 18 23 23 C 1.52999 * 109.46815 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47057 * 299.99723 * 23 22 20 25 25 C 1.53005 * 109.46752 * 60.00298 * 24 23 22 26 26 C 1.52995 * 109.47013 * 300.00057 * 20 19 18 27 27 H 1.09001 * 109.47359 * 299.99454 * 26 20 19 28 28 H 4.40642 * 5.51427 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.47192 * 25.50474 * 3 2 1 30 30 H 1.08996 * 109.47223 * 265.50100 * 3 2 1 31 31 H 0.97005 * 119.99330 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47341 * 60.00279 * 17 15 13 33 33 H 1.08999 * 109.46987 * 180.02562 * 17 15 13 34 34 H 1.08999 * 109.46562 * 60.00469 * 18 17 15 35 35 H 1.09001 * 109.47061 * 180.02562 * 18 17 15 36 36 H 1.08998 * 109.47488 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47423 * 300.00134 * 19 18 17 38 38 H 1.08998 * 109.47547 * 300.00066 * 22 20 19 39 39 H 1.08999 * 109.47483 * 59.99975 * 22 20 19 40 40 H 1.09000 * 109.47450 * 60.00168 * 23 22 20 41 41 H 1.09006 * 109.47133 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.47046 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.46990 * 300.00103 * 24 23 22 44 44 H 1.09000 * 109.47023 * 60.00004 * 25 24 23 45 45 H 1.08999 * 109.46540 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1393 -0.7823 5 6 3.2600 1.0322 -2.1432 6 1 3.9165 1.7017 -2.6790 7 6 2.5432 0.0623 -2.8333 8 7 2.0991 -1.0007 -2.2009 9 14 2.2109 0.2692 -4.6597 10 1 3.5005 0.3506 -5.3914 11 1 1.4332 -0.8943 -5.1563 12 1 1.4353 1.5156 -4.8836 13 6 3.4637 2.2902 -0.1634 14 8 3.4391 2.3563 1.0475 15 6 3.8630 3.4950 -0.9759 16 1 3.1874 3.6011 -1.8245 17 6 5.2952 3.3158 -1.4834 18 6 6.2436 3.1670 -0.2921 19 6 6.1653 4.4202 0.5819 20 6 4.7330 4.5993 1.0895 21 1 4.4442 3.7279 1.6772 22 6 4.6546 5.8530 1.9630 23 6 3.2226 6.0317 2.4711 24 6 2.2736 6.1799 1.2801 25 6 2.3521 4.9261 0.4065 26 6 3.7847 4.7483 -0.1018 27 1 4.0735 5.6197 -0.6894 28 1 -1.0502 -0.0004 0.0001 29 1 3.0098 -0.9267 -0.4425 30 1 3.0093 0.0814 1.0244 31 1 1.5984 -1.6776 -2.6826 32 1 5.3510 2.4230 -2.1061 33 1 5.5842 4.1874 -2.0707 34 1 5.9547 2.2956 0.2955 35 1 7.2640 3.0398 -0.6537 36 1 6.8406 4.3140 1.4309 37 1 6.4541 5.2916 -0.0057 38 1 5.3303 5.7474 2.8118 39 1 4.9433 6.7242 1.3751 40 1 2.9342 5.1605 3.0593 41 1 3.1667 6.9247 3.0938 42 1 1.2533 6.3068 1.6420 43 1 2.5620 7.0511 0.6920 44 1 2.0638 4.0549 0.9947 45 1 1.6758 5.0315 -0.4417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285943142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:28 Heat of formation + Delta-G solvation = -5.946212 kcal Electronic energy + Delta-G solvation = -25025.972662 eV Core-core repulsion = 21815.703428 eV Total energy + Delta-G solvation = -3210.269235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.76901 -39.26292 -36.83783 -36.24432 -33.77819 -33.48876 -32.90386 -30.79796 -29.74999 -28.15281 -26.55394 -24.37612 -23.18517 -22.85132 -21.47690 -20.74592 -20.31486 -19.28164 -18.28768 -17.60437 -16.32439 -16.24726 -16.00515 -15.73427 -15.44347 -15.18740 -14.92708 -14.78973 -14.51389 -14.19691 -13.81192 -13.65695 -13.38662 -13.21920 -12.93509 -12.79788 -12.75422 -12.46625 -12.27787 -12.17603 -12.06604 -11.89996 -11.77448 -11.51037 -11.43258 -11.38650 -11.25280 -10.92125 -10.52831 -10.45063 -10.39552 -9.77228 -9.66099 -8.23183 -5.83969 1.41591 1.47262 1.53923 1.95910 2.14770 2.33351 2.38730 3.13183 3.26366 3.76623 3.88985 3.90377 3.96275 4.15414 4.23925 4.33127 4.38355 4.51018 4.56448 4.63602 4.70271 4.74831 4.82477 4.85682 4.88694 4.93201 4.98507 5.04852 5.10675 5.17438 5.23637 5.24909 5.27398 5.32219 5.38796 5.41021 5.48568 5.51444 5.56611 5.63264 5.66172 5.68644 5.82876 6.15006 6.50888 7.05844 7.20311 7.69028 8.10821 8.72043 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.006197 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.445038 B = 4517.084759 C = 5018.347493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.138 4.138 3 C 0.228 3.772 4 N -0.457 5.457 5 C -0.359 4.359 6 H 0.117 0.883 7 C 0.005 3.995 8 N -0.877 5.877 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.473 3.527 14 O -0.611 6.611 15 C -0.085 4.085 16 H 0.075 0.925 17 C -0.106 4.106 18 C -0.115 4.115 19 C -0.102 4.102 20 C -0.106 4.106 21 H 0.085 0.915 22 C -0.104 4.104 23 C -0.115 4.115 24 C -0.108 4.108 25 C -0.120 4.120 26 C -0.049 4.049 27 H 0.082 0.918 28 H 0.235 0.765 29 H 0.115 0.885 30 H 0.055 0.945 31 H 0.267 0.733 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.040 0.960 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.229 11.452 1.494 12.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.140 4.140 3 C 0.105 3.895 4 N -0.175 5.175 5 C -0.485 4.485 6 H 0.134 0.866 7 C -0.198 4.198 8 N -0.515 5.515 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.264 3.736 14 O -0.499 6.499 15 C -0.106 4.106 16 H 0.093 0.907 17 C -0.144 4.144 18 C -0.152 4.152 19 C -0.139 4.139 20 C -0.124 4.124 21 H 0.102 0.898 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.145 4.145 25 C -0.157 4.157 26 C -0.068 4.068 27 H 0.101 0.899 28 H 0.251 0.749 29 H 0.132 0.868 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.150 11.259 2.021 12.168 hybrid contribution -0.840 -0.921 -0.912 1.544 sum 3.310 10.338 1.110 10.912 Atomic orbital electron populations 1.25156 0.96398 1.02686 1.05033 1.23817 0.95365 0.98289 0.96538 1.18323 0.84254 0.92832 0.94049 1.43927 1.56668 1.09711 1.07243 1.19992 1.27386 1.19735 0.81429 0.86556 1.26027 0.95408 0.94592 1.03785 1.70108 1.35625 1.07658 1.38089 0.85326 0.78991 0.77520 0.78663 1.18426 1.21365 1.19980 1.20708 0.80562 0.84495 0.87864 1.90345 1.60021 1.84022 1.15479 1.21115 0.98554 0.92984 0.97919 0.90696 1.21532 0.92331 1.02682 0.97863 1.21470 0.99133 0.98084 0.96553 1.21491 0.96295 0.97316 0.98805 1.21595 0.94270 0.99866 0.96669 0.89765 1.21514 0.96179 0.97516 0.98967 1.21482 0.95490 1.00913 0.97381 1.21449 0.99227 0.97127 0.96711 1.21630 0.96630 0.98552 0.98920 1.20875 0.95082 0.95100 0.95698 0.89935 0.74888 0.86782 0.92752 0.92290 0.92085 0.89336 0.95323 0.90839 0.92202 0.90760 0.92140 0.91094 0.94350 0.90635 0.92378 0.90692 0.94082 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.35 19.25 74.32 1.43 -10.92 16 2 C -0.14 -6.99 11.49 31.13 0.36 -6.63 16 3 C 0.23 11.67 5.32 84.57 0.45 12.12 16 4 N -0.46 -22.94 2.60 -645.40 -1.68 -24.61 16 5 C -0.36 -17.71 8.47 84.04 0.71 -17.00 16 6 H 0.12 5.33 4.89 -2.91 -0.01 5.31 16 7 C 0.01 0.25 5.25 84.93 0.45 0.70 16 8 N -0.88 -45.33 8.60 21.66 0.19 -45.14 16 9 Si 0.97 39.42 29.61 68.60 2.03 41.45 16 10 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 11 H -0.29 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 13 C 0.47 21.93 4.96 87.66 0.43 22.36 16 14 O -0.61 -30.39 11.04 -3.07 -0.03 -30.43 16 15 C -0.08 -3.19 1.71 -11.54 -0.02 -3.21 16 16 H 0.07 2.95 7.53 -2.39 -0.02 2.94 16 17 C -0.11 -3.49 5.16 30.59 0.16 -3.33 16 18 C -0.11 -3.64 5.70 30.59 0.17 -3.46 16 19 C -0.10 -2.82 5.20 30.59 0.16 -2.66 16 20 C -0.11 -3.35 1.71 -10.79 -0.02 -3.37 16 21 H 0.08 3.44 4.99 -2.46 -0.01 3.43 16 22 C -0.10 -2.66 5.20 30.59 0.16 -2.50 16 23 C -0.12 -3.00 5.92 30.59 0.18 -2.82 16 24 C -0.11 -2.88 5.92 30.60 0.18 -2.69 16 25 C -0.12 -4.09 4.91 30.61 0.15 -3.94 16 26 C -0.05 -1.59 1.74 -10.78 -0.02 -1.61 16 27 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.23 8.20 7.80 -4.41 -0.03 8.16 16 29 H 0.11 6.10 6.13 -2.39 -0.01 6.09 16 30 H 0.05 2.78 7.21 -2.39 -0.02 2.77 16 31 H 0.27 13.35 8.31 -92.70 -0.77 12.58 16 32 H 0.06 2.20 5.85 -2.39 -0.01 2.19 16 33 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.03 1.10 7.12 -2.39 -0.02 1.09 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.04 1.73 6.14 -2.39 -0.01 1.72 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -58.38 334.78 6.41 -51.98 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: 0.96 Total: 35.72 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 4.94 Total: -28.96 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -1.49 Total: -69.76 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.03 Total: -30.43 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -58.38 6.41 -51.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285943142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.030 kcal (2) G-P(sol) polarization free energy of solvation -58.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds