Wall clock time and date at job start Tue Mar 31 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47511 * 47.40867 * 3 2 1 5 5 C 1.37092 * 120.00045 * 263.13261 * 4 3 2 6 6 H 1.08000 * 120.00027 * 212.41336 * 5 4 3 7 7 C 1.38959 * 119.99938 * 32.40770 * 5 4 3 8 8 N 1.31408 * 120.00086 * 6.03543 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 186.03680 * 7 5 4 10 10 H 1.48506 * 109.47031 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.47205 * 119.99910 * 9 7 5 12 12 H 1.48497 * 109.47102 * 240.00241 * 9 7 5 13 13 C 1.34777 * 120.00116 * 83.40559 * 4 3 2 14 14 O 1.21287 * 120.00167 * 174.96711 * 13 4 3 15 15 C 1.50705 * 119.99670 * 354.96644 * 13 4 3 16 16 H 1.09001 * 109.47172 * 25.28029 * 15 13 4 17 17 C 1.52996 * 109.47231 * 265.27012 * 15 13 4 18 18 C 1.53005 * 109.47047 * 179.97438 * 17 15 13 19 19 C 1.53001 * 109.46605 * 60.00500 * 18 17 15 20 20 C 1.52999 * 109.47361 * 299.99500 * 19 18 17 21 21 H 1.08999 * 109.47415 * 180.02562 * 20 19 18 22 22 C 1.53003 * 109.47249 * 300.00466 * 20 19 18 23 23 C 1.52999 * 109.47112 * 179.97438 * 22 20 19 24 24 C 1.52996 * 109.47356 * 300.00249 * 23 22 20 25 25 C 1.52996 * 109.47384 * 60.00021 * 24 23 22 26 26 C 1.53001 * 109.46855 * 145.26963 * 15 13 4 27 27 H 1.09010 * 109.46774 * 60.00158 * 26 15 13 28 28 H 4.40644 * 5.51560 * 180.02562 * 4 1 2 29 29 H 1.09001 * 109.47137 * 287.40475 * 3 2 1 30 30 H 1.09007 * 109.47055 * 167.41232 * 3 2 1 31 31 H 0.96995 * 119.99796 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47272 * 300.00193 * 17 15 13 33 33 H 1.08999 * 109.46567 * 60.00512 * 17 15 13 34 34 H 1.08991 * 109.46959 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.47049 * 300.00530 * 18 17 15 36 36 H 1.08997 * 109.47510 * 59.99875 * 19 18 17 37 37 H 1.09000 * 109.46890 * 180.02562 * 19 18 17 38 38 H 1.08991 * 109.47124 * 299.99431 * 22 20 19 39 39 H 1.08999 * 109.46998 * 59.99640 * 22 20 19 40 40 H 1.08999 * 109.47040 * 60.00208 * 23 22 20 41 41 H 1.09004 * 109.47335 * 180.02562 * 23 22 20 42 42 H 1.09003 * 109.47338 * 180.02562 * 24 23 22 43 43 H 1.08999 * 109.47113 * 299.99429 * 24 23 22 44 44 H 1.08999 * 109.47479 * 59.99632 * 25 24 23 45 45 H 1.09000 * 109.47479 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9338 -1.0168 5 6 3.4978 -2.2068 -0.6600 6 1 4.2935 -2.7098 -1.1893 7 6 2.8419 -2.8497 0.3828 8 7 1.7979 -2.2871 0.9486 9 14 3.4445 -4.5139 0.9803 10 1 4.6284 -4.9266 0.1844 11 1 3.8211 -4.4186 2.4135 12 1 2.3636 -5.5191 0.8183 13 6 3.2330 -0.5404 -2.3021 14 8 3.7226 -1.2820 -3.1277 15 6 2.7343 0.8209 -2.7136 16 1 2.7546 1.4905 -1.8537 17 6 1.3006 0.7029 -3.2346 18 6 0.7941 2.0851 -3.6517 19 6 1.6932 2.6459 -4.7553 20 6 3.1270 2.7640 -4.2344 21 1 3.7674 3.1639 -5.0205 22 6 3.1552 3.7033 -3.0270 23 6 4.5889 3.8209 -2.5058 24 6 5.0948 2.4386 -2.0885 25 6 5.0666 1.4993 -3.2959 26 6 3.6335 1.3812 -3.8174 27 1 3.6133 0.7116 -4.6773 28 1 -1.0499 -0.0001 -0.0004 29 1 3.0095 -0.3066 0.9806 30 1 3.0089 1.0039 -0.2240 31 1 1.3399 -2.7361 1.6762 32 1 1.2804 0.0334 -4.0944 33 1 0.6601 0.3037 -2.4481 34 1 -0.2273 2.0011 -4.0224 35 1 0.8143 2.7543 -2.7914 36 1 1.6731 1.9768 -5.6155 37 1 1.3327 3.6308 -5.0522 38 1 2.7945 4.6879 -3.3242 39 1 2.5147 3.3037 -2.2408 40 1 5.2297 4.2202 -3.2918 41 1 4.6090 4.4897 -1.6453 42 1 6.1161 2.5224 -1.7167 43 1 4.4541 2.0392 -1.3023 44 1 5.7074 1.8986 -4.0820 45 1 5.4267 0.5143 -2.9985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285943144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:31 Heat of formation + Delta-G solvation = -1.178291 kcal Electronic energy + Delta-G solvation = -25209.101099 eV Core-core repulsion = 21999.038617 eV Total energy + Delta-G solvation = -3210.062482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.49400 -37.91774 -35.07913 -34.77598 -32.31513 -31.50239 -31.10647 -29.82474 -28.40558 -26.41732 -24.87216 -23.49559 -22.22930 -21.86881 -20.45197 -19.16169 -17.78230 -17.23958 -16.60353 -16.26467 -15.18972 -15.02413 -14.56653 -14.33882 -14.04332 -13.87757 -13.59431 -13.39023 -12.79275 -12.63519 -12.31445 -12.17671 -12.02905 -11.94940 -11.76535 -11.52707 -11.40547 -11.04013 -10.95387 -10.87961 -10.69300 -10.41878 -10.38027 -10.31082 -10.18149 -9.62261 -9.51376 -9.46683 -9.27693 -9.05146 -8.74670 -8.19980 -7.65708 -6.20957 -3.92494 3.18027 3.27920 3.33785 3.79603 3.98793 4.15028 4.25831 4.76389 4.86476 4.92307 5.08949 5.14805 5.28855 5.31990 5.42696 5.50802 5.55178 5.61703 5.69789 5.72298 5.79873 5.87384 5.88805 5.93149 5.96343 6.05819 6.10798 6.15987 6.25310 6.28852 6.38802 6.43841 6.45494 6.50413 6.62259 6.62916 6.71077 6.77156 6.78447 6.84300 6.94585 7.10668 7.60289 8.22819 8.51446 8.91971 9.21910 9.41620 10.00887 10.78075 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020616 B = 0.006060 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.851936 B = 4619.633662 C = 5020.449858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.100 4.100 3 C 0.235 3.765 4 N -0.446 5.446 5 C -0.313 4.313 6 H 0.096 0.904 7 C 0.034 3.966 8 N -0.870 5.870 9 Si 0.922 3.078 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.473 3.527 14 O -0.579 6.579 15 C -0.096 4.096 16 H 0.084 0.916 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.080 4.080 21 H 0.065 0.935 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.115 4.115 26 C -0.061 4.061 27 H 0.076 0.924 28 H 0.195 0.805 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.266 0.734 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.242 12.665 -4.367 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.102 4.102 3 C 0.112 3.888 4 N -0.165 5.165 5 C -0.440 4.440 6 H 0.113 0.887 7 C -0.170 4.170 8 N -0.508 5.508 9 Si 0.749 3.251 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.209 1.209 13 C 0.262 3.738 14 O -0.462 6.462 15 C -0.118 4.118 16 H 0.102 0.898 17 C -0.147 4.147 18 C -0.153 4.153 19 C -0.151 4.151 20 C -0.098 4.098 21 H 0.084 0.916 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.152 4.152 26 C -0.080 4.080 27 H 0.094 0.906 28 H 0.213 0.787 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.404 12.209 -4.598 13.052 hybrid contribution -0.226 -0.995 0.583 1.175 sum 0.178 11.214 -4.015 11.912 Atomic orbital electron populations 1.24126 0.95236 1.05825 1.03474 1.23033 0.94202 0.95537 0.97383 1.18191 0.84461 0.91124 0.95025 1.43549 1.56978 1.11603 1.04386 1.19573 1.17266 0.90275 1.16935 0.88679 1.25431 0.94763 0.98997 0.97819 1.69908 1.18086 1.38428 1.24381 0.85932 0.78794 0.82117 0.78265 1.19349 1.20827 1.20876 1.20213 0.82726 0.88557 0.82325 1.90498 1.48405 1.56723 1.50616 1.21344 0.95652 0.95917 0.98869 0.89824 1.21461 0.95056 0.96676 1.01462 1.21537 0.98251 0.96975 0.98516 1.21566 0.95054 1.00211 0.98278 1.21137 0.96057 0.95552 0.97079 0.91644 1.21683 0.96907 0.98659 0.98278 1.21516 0.96546 0.97113 1.00182 1.21602 1.00737 0.95126 0.98572 1.21546 0.96431 1.00114 0.97153 1.20914 0.93905 0.95102 0.98104 0.90599 0.78744 0.88130 0.92418 0.92325 0.92108 0.90823 0.92446 0.91845 0.92131 0.92549 0.92607 0.91227 0.92486 0.92505 0.92480 0.91696 0.92656 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.48 18.24 29.55 0.54 -4.94 16 2 C -0.10 -2.19 9.58 -37.12 -0.36 -2.55 16 3 C 0.24 5.17 4.81 -6.83 -0.03 5.14 16 4 N -0.45 -11.13 2.57 -117.93 -0.30 -11.43 16 5 C -0.31 -8.59 9.10 -14.93 -0.14 -8.72 16 6 H 0.10 2.75 7.54 -52.49 -0.40 2.35 16 7 C 0.03 0.88 5.15 -17.47 -0.09 0.79 16 8 N -0.87 -22.94 9.29 55.50 0.52 -22.43 16 9 Si 0.92 20.89 29.56 -169.99 -5.02 15.87 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.47 11.27 5.52 -10.98 -0.06 11.20 16 14 O -0.58 -15.80 15.49 5.55 0.09 -15.72 16 15 C -0.10 -1.78 0.74 -91.77 -0.07 -1.84 16 16 H 0.08 1.47 2.62 -51.93 -0.14 1.34 16 17 C -0.11 -1.92 5.14 -26.73 -0.14 -2.06 16 18 C -0.12 -1.58 5.65 -26.73 -0.15 -1.73 16 19 C -0.11 -1.41 5.45 -26.73 -0.15 -1.56 16 20 C -0.08 -1.04 2.47 -90.59 -0.22 -1.26 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 22 C -0.12 -1.42 4.59 -26.73 -0.12 -1.54 16 23 C -0.12 -1.37 5.92 -26.73 -0.16 -1.52 16 24 C -0.12 -1.73 5.65 -26.74 -0.15 -1.88 16 25 C -0.11 -1.83 5.19 -26.75 -0.14 -1.97 16 26 C -0.06 -1.00 1.68 -90.61 -0.15 -1.16 16 27 H 0.08 1.39 7.86 -51.92 -0.41 0.98 16 28 H 0.20 3.32 7.80 -54.10 -0.42 2.89 16 29 H 0.10 2.34 7.02 -51.93 -0.36 1.97 16 30 H 0.06 1.09 5.26 -51.92 -0.27 0.81 16 31 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.43 5.77 -51.93 -0.30 1.14 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.91 4.81 -51.93 -0.25 0.66 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 1.00 5.46 -51.93 -0.28 0.72 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.38 6.81 -51.93 -0.35 1.02 16 LS Contribution 330.20 15.07 4.98 4.98 Total: -1.00 -29.76 330.20 -8.22 -37.98 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.88 Total: 6.37 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.58 Total: -15.62 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.21 Total: -33.86 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.09 Total: -15.72 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.76 -8.22 -37.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285943144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.800 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds