Wall clock time and date at job start Tue Mar 31 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47511 * 47.40867 * 3 2 1 5 5 C 1.37092 * 120.00045 * 263.13261 * 4 3 2 6 6 H 1.08000 * 120.00027 * 212.41336 * 5 4 3 7 7 C 1.38959 * 119.99938 * 32.40770 * 5 4 3 8 8 N 1.31408 * 120.00086 * 6.03543 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 186.03680 * 7 5 4 10 10 H 1.48506 * 109.47031 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.47205 * 119.99910 * 9 7 5 12 12 H 1.48497 * 109.47102 * 240.00241 * 9 7 5 13 13 C 1.34777 * 120.00116 * 83.40559 * 4 3 2 14 14 O 1.21287 * 120.00167 * 174.96711 * 13 4 3 15 15 C 1.50705 * 119.99670 * 354.96644 * 13 4 3 16 16 H 1.09001 * 109.47172 * 25.28029 * 15 13 4 17 17 C 1.52996 * 109.47231 * 265.27012 * 15 13 4 18 18 C 1.53005 * 109.47047 * 179.97438 * 17 15 13 19 19 C 1.53001 * 109.46605 * 60.00500 * 18 17 15 20 20 C 1.52999 * 109.47361 * 299.99500 * 19 18 17 21 21 H 1.08999 * 109.47415 * 180.02562 * 20 19 18 22 22 C 1.53003 * 109.47249 * 300.00466 * 20 19 18 23 23 C 1.52999 * 109.47112 * 179.97438 * 22 20 19 24 24 C 1.52996 * 109.47356 * 300.00249 * 23 22 20 25 25 C 1.52996 * 109.47384 * 60.00021 * 24 23 22 26 26 C 1.53001 * 109.46855 * 145.26963 * 15 13 4 27 27 H 1.09010 * 109.46774 * 60.00158 * 26 15 13 28 28 H 4.40644 * 5.51560 * 180.02562 * 4 1 2 29 29 H 1.09001 * 109.47137 * 287.40475 * 3 2 1 30 30 H 1.09007 * 109.47055 * 167.41232 * 3 2 1 31 31 H 0.96995 * 119.99796 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47272 * 300.00193 * 17 15 13 33 33 H 1.08999 * 109.46567 * 60.00512 * 17 15 13 34 34 H 1.08991 * 109.46959 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.47049 * 300.00530 * 18 17 15 36 36 H 1.08997 * 109.47510 * 59.99875 * 19 18 17 37 37 H 1.09000 * 109.46890 * 180.02562 * 19 18 17 38 38 H 1.08991 * 109.47124 * 299.99431 * 22 20 19 39 39 H 1.08999 * 109.46998 * 59.99640 * 22 20 19 40 40 H 1.08999 * 109.47040 * 60.00208 * 23 22 20 41 41 H 1.09004 * 109.47335 * 180.02562 * 23 22 20 42 42 H 1.09003 * 109.47338 * 180.02562 * 24 23 22 43 43 H 1.08999 * 109.47113 * 299.99429 * 24 23 22 44 44 H 1.08999 * 109.47479 * 59.99632 * 25 24 23 45 45 H 1.09000 * 109.47479 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9338 -1.0168 5 6 3.4978 -2.2068 -0.6600 6 1 4.2935 -2.7098 -1.1893 7 6 2.8419 -2.8497 0.3828 8 7 1.7979 -2.2871 0.9486 9 14 3.4445 -4.5139 0.9803 10 1 4.6284 -4.9266 0.1844 11 1 3.8211 -4.4186 2.4135 12 1 2.3636 -5.5191 0.8183 13 6 3.2330 -0.5404 -2.3021 14 8 3.7226 -1.2820 -3.1277 15 6 2.7343 0.8209 -2.7136 16 1 2.7546 1.4905 -1.8537 17 6 1.3006 0.7029 -3.2346 18 6 0.7941 2.0851 -3.6517 19 6 1.6932 2.6459 -4.7553 20 6 3.1270 2.7640 -4.2344 21 1 3.7674 3.1639 -5.0205 22 6 3.1552 3.7033 -3.0270 23 6 4.5889 3.8209 -2.5058 24 6 5.0948 2.4386 -2.0885 25 6 5.0666 1.4993 -3.2959 26 6 3.6335 1.3812 -3.8174 27 1 3.6133 0.7116 -4.6773 28 1 -1.0499 -0.0001 -0.0004 29 1 3.0095 -0.3066 0.9806 30 1 3.0089 1.0039 -0.2240 31 1 1.3399 -2.7361 1.6762 32 1 1.2804 0.0334 -4.0944 33 1 0.6601 0.3037 -2.4481 34 1 -0.2273 2.0011 -4.0224 35 1 0.8143 2.7543 -2.7914 36 1 1.6731 1.9768 -5.6155 37 1 1.3327 3.6308 -5.0522 38 1 2.7945 4.6879 -3.3242 39 1 2.5147 3.3037 -2.2408 40 1 5.2297 4.2202 -3.2918 41 1 4.6090 4.4897 -1.6453 42 1 6.1161 2.5224 -1.7167 43 1 4.4541 2.0392 -1.3023 44 1 5.7074 1.8986 -4.0820 45 1 5.4267 0.5143 -2.9985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285943144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:30 Heat of formation + Delta-G solvation = -16.333367 kcal Electronic energy + Delta-G solvation = -25209.758272 eV Core-core repulsion = 21999.038617 eV Total energy + Delta-G solvation = -3210.719655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.89351 -39.59474 -37.01813 -35.94207 -34.09802 -32.96395 -32.90697 -31.00113 -29.64199 -28.23966 -26.68706 -24.84539 -23.53757 -23.01115 -21.71723 -20.71277 -19.58916 -18.60320 -18.38516 -18.03373 -16.69840 -16.37928 -16.07687 -16.00080 -15.55476 -15.27680 -14.89182 -14.75914 -14.30003 -14.13456 -13.96037 -13.60545 -13.50833 -13.33787 -13.11677 -12.95454 -12.86003 -12.77252 -12.57582 -12.19656 -12.09006 -12.04785 -11.79859 -11.51291 -11.41561 -11.19546 -10.90404 -10.75407 -10.68116 -10.65942 -10.46798 -10.06667 -9.65633 -8.23814 -6.03468 1.34335 1.38430 1.50953 1.98999 2.19361 2.34429 2.48381 3.06968 3.21911 3.64217 3.78901 3.83841 3.91565 4.12366 4.18393 4.25702 4.31612 4.37513 4.41560 4.51418 4.52929 4.61009 4.67689 4.75820 4.78503 4.85561 4.91998 4.96760 4.97260 5.08646 5.21941 5.23323 5.25766 5.29660 5.31047 5.41247 5.43264 5.44777 5.48880 5.53368 5.59626 5.62107 5.73225 6.17310 6.51730 7.19138 7.24661 7.45549 8.05862 8.72028 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020616 B = 0.006060 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.851936 B = 4619.633662 C = 5020.449858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.138 4.138 3 C 0.240 3.760 4 N -0.458 5.458 5 C -0.349 4.349 6 H 0.065 0.935 7 C 0.003 3.997 8 N -0.876 5.876 9 Si 0.982 3.018 10 H -0.277 1.277 11 H -0.265 1.265 12 H -0.280 1.280 13 C 0.463 3.537 14 O -0.628 6.628 15 C -0.080 4.080 16 H 0.096 0.904 17 C -0.107 4.107 18 C -0.107 4.107 19 C -0.111 4.111 20 C -0.074 4.074 21 H 0.083 0.917 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.122 4.122 25 C -0.114 4.114 26 C -0.060 4.060 27 H 0.045 0.955 28 H 0.228 0.772 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.269 0.731 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.074 0.926 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 15.527 -4.221 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.140 4.140 3 C 0.118 3.882 4 N -0.176 5.176 5 C -0.477 4.477 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.513 5.513 9 Si 0.807 3.193 10 H -0.202 1.202 11 H -0.190 1.190 12 H -0.206 1.206 13 C 0.254 3.746 14 O -0.514 6.514 15 C -0.102 4.102 16 H 0.114 0.886 17 C -0.145 4.145 18 C -0.144 4.144 19 C -0.149 4.149 20 C -0.092 4.092 21 H 0.101 0.899 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.159 4.159 25 C -0.151 4.151 26 C -0.079 4.079 27 H 0.064 0.936 28 H 0.245 0.755 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.793 15.101 -4.426 15.756 hybrid contribution 0.135 -1.958 0.533 2.033 sum -0.658 13.143 -3.893 13.723 Atomic orbital electron populations 1.24918 0.96092 1.04036 1.01651 1.23159 0.94610 0.97146 0.99042 1.18169 0.85077 0.91661 0.93311 1.43755 1.56968 1.11403 1.05511 1.19475 1.17924 0.92087 1.18170 0.91713 1.26066 0.94752 1.01880 0.97256 1.70022 1.18041 1.39193 1.24075 0.85044 0.77918 0.78079 0.78287 1.20192 1.19010 1.20609 1.21216 0.81455 0.90360 0.81582 1.90448 1.50376 1.58741 1.51850 1.21272 0.96425 0.92464 0.99990 0.88639 1.21457 0.94130 0.99180 0.99782 1.21509 0.99199 0.94145 0.99582 1.21581 0.94220 1.01706 0.97358 1.21132 0.96723 0.93064 0.98276 0.89870 1.21699 0.96895 0.99598 0.97170 1.21499 0.96582 0.95261 1.01410 1.21592 1.01087 0.96321 0.96898 1.21507 0.96460 0.98383 0.98758 1.20911 0.93907 0.96994 0.96111 0.93605 0.75522 0.89958 0.89597 0.92051 0.94427 0.92837 0.90881 0.90560 0.92852 0.89219 0.89634 0.92306 0.90923 0.90735 0.91737 0.93602 0.90783 0.95694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.82 18.24 74.32 1.36 -8.47 16 2 C -0.14 -6.05 9.58 31.12 0.30 -5.75 16 3 C 0.24 10.83 4.81 84.57 0.41 11.24 16 4 N -0.46 -24.04 2.57 -645.41 -1.66 -25.70 16 5 C -0.35 -20.23 9.10 84.04 0.76 -19.47 16 6 H 0.06 4.05 7.54 -2.91 -0.02 4.03 16 7 C 0.00 0.18 5.15 84.93 0.44 0.62 16 8 N -0.88 -46.61 9.29 21.67 0.20 -46.41 16 9 Si 0.98 43.79 29.56 68.60 2.03 45.82 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 C 0.46 23.41 5.52 87.66 0.48 23.90 16 14 O -0.63 -37.01 15.49 -3.05 -0.05 -37.05 16 15 C -0.08 -3.03 0.74 -11.54 -0.01 -3.04 16 16 H 0.10 3.35 2.62 -2.39 -0.01 3.34 16 17 C -0.11 -3.82 5.14 30.59 0.16 -3.66 16 18 C -0.11 -2.67 5.65 30.60 0.17 -2.49 16 19 C -0.11 -2.41 5.45 30.59 0.17 -2.24 16 20 C -0.07 -1.71 2.47 -10.78 -0.03 -1.74 16 21 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 22 C -0.12 -2.33 4.59 30.59 0.14 -2.19 16 23 C -0.11 -2.20 5.92 30.59 0.18 -2.01 16 24 C -0.12 -3.30 5.65 30.59 0.17 -3.12 16 25 C -0.11 -3.70 5.19 30.58 0.16 -3.54 16 26 C -0.06 -1.99 1.68 -10.79 -0.02 -2.00 16 27 H 0.05 1.77 7.86 -2.38 -0.02 1.75 16 28 H 0.23 7.09 7.80 -4.42 -0.03 7.05 16 29 H 0.08 3.96 7.02 -2.39 -0.02 3.94 16 30 H 0.09 3.28 5.26 -2.38 -0.01 3.26 16 31 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 2.09 5.77 -2.39 -0.01 2.08 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.75 6.43 -2.39 -0.02 1.73 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.32 4.81 -2.39 -0.01 1.31 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 1.40 5.46 -2.39 -0.01 1.39 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.02 1.02 6.81 -2.39 -0.02 1.00 16 Total: -1.00 -68.98 330.20 6.34 -62.64 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.98 Total: 24.68 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 4.84 Total: -23.96 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -1.46 Total: -72.12 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -0.05 Total: -37.05 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.98 6.34 -62.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285943144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.306 kcal (2) G-P(sol) polarization free energy of solvation -68.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds