Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47626 * 343.17713 * 3 2 1 5 5 C 1.37095 * 120.00316 * 264.64165 * 4 3 2 6 6 H 1.07998 * 120.00070 * 144.84193 * 5 4 3 7 7 C 1.38954 * 119.99858 * 324.84182 * 5 4 3 8 8 N 1.31410 * 119.99676 * 157.48858 * 7 5 4 9 9 Si 1.86800 * 119.99811 * 337.49005 * 7 5 4 10 10 H 1.48503 * 109.46823 * 95.42258 * 9 7 5 11 11 H 1.48502 * 109.46963 * 215.41739 * 9 7 5 12 12 H 1.48495 * 109.47146 * 335.42419 * 9 7 5 13 13 C 1.34782 * 119.99861 * 84.63294 * 4 3 2 14 14 O 1.21290 * 119.99588 * 5.37210 * 13 4 3 15 15 C 1.50701 * 119.99972 * 185.36825 * 13 4 3 16 16 H 1.08996 * 109.46648 * 53.66083 * 15 13 4 17 17 C 1.52990 * 109.47041 * 293.65773 * 15 13 4 18 18 C 1.53003 * 109.47047 * 180.02562 * 17 15 13 19 19 C 1.53003 * 109.47291 * 59.99696 * 18 17 15 20 20 C 1.53001 * 109.47243 * 300.00448 * 19 18 17 21 21 H 1.08997 * 109.46765 * 299.99694 * 20 19 18 22 22 C 1.52990 * 109.47150 * 179.97438 * 20 19 18 23 23 C 1.52999 * 109.47330 * 299.99883 * 22 20 19 24 24 C 1.53005 * 109.47243 * 299.99953 * 23 22 20 25 25 C 1.53002 * 109.46642 * 59.99699 * 24 23 22 26 26 C 1.52998 * 109.46831 * 173.65545 * 15 13 4 27 27 H 1.09002 * 109.47489 * 300.00208 * 26 15 13 28 28 H 4.40645 * 5.51345 * 180.02562 * 4 1 2 29 29 H 1.09011 * 109.46888 * 223.17903 * 3 2 1 30 30 H 1.08996 * 109.47533 * 103.18188 * 3 2 1 31 31 H 0.97005 * 119.99510 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47474 * 300.00207 * 17 15 13 33 33 H 1.09000 * 109.47573 * 60.00192 * 17 15 13 34 34 H 1.09002 * 109.47260 * 180.02562 * 18 17 15 35 35 H 1.08997 * 109.47100 * 299.99767 * 18 17 15 36 36 H 1.08998 * 109.46589 * 60.00363 * 19 18 17 37 37 H 1.08998 * 109.47080 * 180.02562 * 19 18 17 38 38 H 1.08995 * 109.47631 * 59.99747 * 22 20 19 39 39 H 1.09002 * 109.47225 * 179.97438 * 22 20 19 40 40 H 1.09004 * 109.47650 * 180.02562 * 23 22 20 41 41 H 1.09002 * 109.46916 * 59.99873 * 23 22 20 42 42 H 1.08996 * 109.47031 * 300.00532 * 24 23 22 43 43 H 1.08998 * 109.47377 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.47285 * 60.00223 * 25 24 23 45 45 H 1.09008 * 109.46750 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3212 0.3997 5 6 3.4682 -1.5622 1.7075 6 1 3.2814 -2.5330 2.1423 7 6 4.0462 -0.5574 2.4737 8 7 3.9663 -0.6024 3.7846 9 14 4.9369 0.8573 1.6402 10 1 4.0086 2.0067 1.4898 11 1 6.1005 1.2658 2.4676 12 1 5.4095 0.4242 0.3008 13 6 3.2572 -2.3004 -0.5183 14 8 3.0561 -2.0614 -1.6903 15 6 3.6438 -3.6922 -0.0885 16 1 2.9641 -4.0331 0.6924 17 6 5.0754 -3.6802 0.4508 18 6 5.4681 -5.0933 0.8866 19 6 5.3829 -6.0391 -0.3130 20 6 3.9512 -6.0511 -0.8525 21 1 3.2716 -6.3925 -0.0716 22 6 3.8661 -6.9963 -2.0524 23 6 4.8200 -6.5166 -3.1482 24 6 4.4271 -5.1033 -3.5835 25 6 4.5122 -4.1580 -2.3835 26 6 3.5584 -4.6384 -1.2878 27 1 2.5384 -4.6469 -1.6721 28 1 -1.0498 -0.0004 -0.0001 29 1 3.0090 0.7503 0.7033 30 1 3.0093 0.2352 -1.0005 31 1 4.3701 0.0989 4.3195 32 1 5.7550 -3.3391 -0.3301 33 1 5.1362 -3.0061 1.3052 34 1 6.4879 -5.0847 1.2713 35 1 4.7886 -5.4347 1.6674 36 1 6.0625 -5.6977 -1.0938 37 1 5.6622 -7.0459 -0.0025 38 1 4.1460 -8.0031 -1.7424 39 1 2.8460 -7.0052 -2.4364 40 1 4.7591 -7.1898 -4.0034 41 1 5.8400 -6.5080 -2.7640 42 1 3.4071 -5.1118 -3.9677 43 1 5.1069 -4.7613 -4.3639 44 1 5.5321 -4.1495 -1.9992 45 1 4.2318 -3.1513 -2.6935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285943148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = 4.906568 kcal Electronic energy + Delta-G solvation = -24791.553226 eV Core-core repulsion = 21581.754603 eV Total energy + Delta-G solvation = -3209.798623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41814 -38.36863 -35.28637 -34.65464 -32.70027 -31.72539 -31.55256 -29.75613 -28.60094 -26.58338 -25.05271 -23.45716 -21.96575 -21.75185 -20.75618 -18.88358 -18.39872 -17.48435 -16.67716 -16.09279 -15.45008 -15.16363 -14.90904 -14.45586 -14.18443 -14.00860 -13.60920 -13.19975 -13.00815 -12.82501 -12.55706 -12.39048 -12.24770 -11.91381 -11.77472 -11.65470 -11.42046 -11.01001 -10.88370 -10.84067 -10.74152 -10.36250 -10.30782 -10.16393 -9.97548 -9.81981 -9.63811 -9.47254 -9.37373 -9.36176 -9.16656 -8.33140 -7.90642 -6.54211 -4.10107 2.97398 3.15439 3.22598 3.26605 3.51227 3.69284 4.05537 4.51168 4.81748 4.90638 4.97120 5.11040 5.13366 5.36015 5.42822 5.52908 5.59444 5.70477 5.76146 5.87012 5.88679 5.93196 5.97959 6.00060 6.04456 6.06636 6.12727 6.17263 6.19676 6.32470 6.40746 6.44650 6.52014 6.53541 6.56905 6.58097 6.68458 6.70728 6.90046 6.97498 7.13330 7.20130 7.29029 8.01423 8.18067 8.25517 8.88293 9.28130 9.61728 10.56073 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.006127 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.899634 B = 4568.886792 C = 5265.394583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.163 4.163 3 C 0.199 3.801 4 N -0.463 5.463 5 C -0.341 4.341 6 H 0.109 0.891 7 C 0.067 3.933 8 N -0.854 5.854 9 Si 0.864 3.136 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.257 1.257 13 C 0.492 3.508 14 O -0.586 6.586 15 C -0.076 4.076 16 H 0.084 0.916 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.082 4.082 21 H 0.065 0.935 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.130 4.130 26 C -0.056 4.056 27 H 0.064 0.936 28 H 0.212 0.788 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.276 0.724 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 -7.881 -7.318 10.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.164 4.164 3 C 0.077 3.923 4 N -0.183 5.183 5 C -0.467 4.467 6 H 0.127 0.873 7 C -0.141 4.141 8 N -0.489 5.489 9 Si 0.691 3.309 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.181 1.181 13 C 0.283 3.717 14 O -0.471 6.471 15 C -0.097 4.097 16 H 0.102 0.898 17 C -0.155 4.155 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.101 4.101 21 H 0.083 0.917 22 C -0.148 4.148 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.167 4.167 26 C -0.075 4.075 27 H 0.082 0.918 28 H 0.229 0.771 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.802 -7.678 -7.676 11.006 hybrid contribution 0.127 0.820 0.026 0.830 sum 1.930 -6.859 -7.650 10.454 Atomic orbital electron populations 1.24639 0.95624 1.01229 1.03346 1.23750 0.94907 0.99494 0.98244 1.18672 0.83884 0.88493 1.01220 1.43732 1.56824 1.08760 1.08984 1.19055 1.41093 1.02193 0.84378 0.87331 1.25266 0.96169 0.97703 0.94964 1.69774 1.40335 1.34218 1.04567 0.87147 0.80204 0.82467 0.81082 1.20063 1.21091 1.18079 1.20466 0.79049 0.87418 0.84811 1.90436 1.55284 1.83573 1.17771 1.20936 0.98825 0.92170 0.97781 0.89800 1.21638 0.94061 0.97112 1.02640 1.21510 1.00810 0.95602 0.97315 1.21682 0.96753 0.98708 0.98111 1.21124 0.97034 0.95278 0.96624 0.91695 1.21519 0.99474 0.98070 0.95779 1.21581 0.99569 0.96830 0.97736 1.21513 1.00806 0.94814 0.98172 1.21997 0.98978 1.01392 0.94360 1.20827 0.99491 0.92546 0.94635 0.91760 0.77149 0.89285 0.89065 0.91406 0.92567 0.88109 0.92470 0.92192 0.91577 0.92995 0.92637 0.92381 0.93063 0.91995 0.92571 0.92932 0.92507 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.39 19.25 29.55 0.57 -3.82 16 2 C -0.16 -3.57 13.62 -37.12 -0.51 -4.07 16 3 C 0.20 4.53 4.50 -6.83 -0.03 4.50 16 4 N -0.46 -10.94 2.20 -117.93 -0.26 -11.20 16 5 C -0.34 -8.47 7.13 -14.93 -0.11 -8.58 16 6 H 0.11 2.82 6.69 -52.49 -0.35 2.47 16 7 C 0.07 1.69 5.29 -17.47 -0.09 1.60 16 8 N -0.85 -22.78 13.96 55.50 0.77 -22.00 16 9 Si 0.86 19.52 24.94 -169.99 -4.24 15.28 16 10 H -0.27 -6.01 6.66 56.52 0.38 -5.63 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.49 11.06 6.73 -10.98 -0.07 10.99 16 14 O -0.59 -13.92 13.08 5.55 0.07 -13.85 16 15 C -0.08 -1.45 1.52 -91.78 -0.14 -1.59 16 16 H 0.08 1.64 7.49 -51.93 -0.39 1.26 16 17 C -0.12 -2.11 4.65 -26.73 -0.12 -2.23 16 18 C -0.11 -1.71 5.92 -26.73 -0.16 -1.87 16 19 C -0.12 -1.54 4.59 -26.73 -0.12 -1.66 16 20 C -0.08 -1.14 2.46 -90.65 -0.22 -1.37 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 22 C -0.11 -1.35 5.45 -26.74 -0.15 -1.50 16 23 C -0.12 -1.44 5.65 -26.73 -0.15 -1.59 16 24 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 25 C -0.13 -2.15 4.27 -26.73 -0.11 -2.26 16 26 C -0.06 -0.94 1.67 -90.64 -0.15 -1.09 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.21 3.02 7.80 -54.10 -0.42 2.60 16 29 H 0.09 2.03 3.24 -51.92 -0.17 1.87 16 30 H 0.09 1.99 7.52 -51.93 -0.39 1.60 16 31 H 0.28 6.89 8.31 -40.82 -0.34 6.56 16 32 H 0.06 1.02 6.43 -51.93 -0.33 0.68 16 33 H 0.10 2.08 5.64 -51.93 -0.29 1.78 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.89 4.81 -51.93 -0.25 0.64 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.92 4.81 -51.93 -0.25 0.67 16 45 H 0.10 1.95 5.28 -51.92 -0.27 1.67 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -27.20 329.54 -7.26 -34.46 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.84 Total: 8.65 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -1.73 Total: -16.31 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.52 Total: -33.20 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.07 Total: -13.85 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.24 Total: 15.28 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.20 -7.26 -34.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285943148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.362 kcal (2) G-P(sol) polarization free energy of solvation -27.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds