Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47626 * 343.17713 * 3 2 1 5 5 C 1.37095 * 120.00316 * 264.64165 * 4 3 2 6 6 H 1.07998 * 120.00070 * 144.84193 * 5 4 3 7 7 C 1.38954 * 119.99858 * 324.84182 * 5 4 3 8 8 N 1.31410 * 119.99676 * 157.48858 * 7 5 4 9 9 Si 1.86800 * 119.99811 * 337.49005 * 7 5 4 10 10 H 1.48503 * 109.46823 * 95.42258 * 9 7 5 11 11 H 1.48502 * 109.46963 * 215.41739 * 9 7 5 12 12 H 1.48495 * 109.47146 * 335.42419 * 9 7 5 13 13 C 1.34782 * 119.99861 * 84.63294 * 4 3 2 14 14 O 1.21290 * 119.99588 * 5.37210 * 13 4 3 15 15 C 1.50701 * 119.99972 * 185.36825 * 13 4 3 16 16 H 1.08996 * 109.46648 * 53.66083 * 15 13 4 17 17 C 1.52990 * 109.47041 * 293.65773 * 15 13 4 18 18 C 1.53003 * 109.47047 * 180.02562 * 17 15 13 19 19 C 1.53003 * 109.47291 * 59.99696 * 18 17 15 20 20 C 1.53001 * 109.47243 * 300.00448 * 19 18 17 21 21 H 1.08997 * 109.46765 * 299.99694 * 20 19 18 22 22 C 1.52990 * 109.47150 * 179.97438 * 20 19 18 23 23 C 1.52999 * 109.47330 * 299.99883 * 22 20 19 24 24 C 1.53005 * 109.47243 * 299.99953 * 23 22 20 25 25 C 1.53002 * 109.46642 * 59.99699 * 24 23 22 26 26 C 1.52998 * 109.46831 * 173.65545 * 15 13 4 27 27 H 1.09002 * 109.47489 * 300.00208 * 26 15 13 28 28 H 4.40645 * 5.51345 * 180.02562 * 4 1 2 29 29 H 1.09011 * 109.46888 * 223.17903 * 3 2 1 30 30 H 1.08996 * 109.47533 * 103.18188 * 3 2 1 31 31 H 0.97005 * 119.99510 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47474 * 300.00207 * 17 15 13 33 33 H 1.09000 * 109.47573 * 60.00192 * 17 15 13 34 34 H 1.09002 * 109.47260 * 180.02562 * 18 17 15 35 35 H 1.08997 * 109.47100 * 299.99767 * 18 17 15 36 36 H 1.08998 * 109.46589 * 60.00363 * 19 18 17 37 37 H 1.08998 * 109.47080 * 180.02562 * 19 18 17 38 38 H 1.08995 * 109.47631 * 59.99747 * 22 20 19 39 39 H 1.09002 * 109.47225 * 179.97438 * 22 20 19 40 40 H 1.09004 * 109.47650 * 180.02562 * 23 22 20 41 41 H 1.09002 * 109.46916 * 59.99873 * 23 22 20 42 42 H 1.08996 * 109.47031 * 300.00532 * 24 23 22 43 43 H 1.08998 * 109.47377 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.47285 * 60.00223 * 25 24 23 45 45 H 1.09008 * 109.46750 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3212 0.3997 5 6 3.4682 -1.5622 1.7075 6 1 3.2814 -2.5330 2.1423 7 6 4.0462 -0.5574 2.4737 8 7 3.9663 -0.6024 3.7846 9 14 4.9369 0.8573 1.6402 10 1 4.0086 2.0067 1.4898 11 1 6.1005 1.2658 2.4676 12 1 5.4095 0.4242 0.3008 13 6 3.2572 -2.3004 -0.5183 14 8 3.0561 -2.0614 -1.6903 15 6 3.6438 -3.6922 -0.0885 16 1 2.9641 -4.0331 0.6924 17 6 5.0754 -3.6802 0.4508 18 6 5.4681 -5.0933 0.8866 19 6 5.3829 -6.0391 -0.3130 20 6 3.9512 -6.0511 -0.8525 21 1 3.2716 -6.3925 -0.0716 22 6 3.8661 -6.9963 -2.0524 23 6 4.8200 -6.5166 -3.1482 24 6 4.4271 -5.1033 -3.5835 25 6 4.5122 -4.1580 -2.3835 26 6 3.5584 -4.6384 -1.2878 27 1 2.5384 -4.6469 -1.6721 28 1 -1.0498 -0.0004 -0.0001 29 1 3.0090 0.7503 0.7033 30 1 3.0093 0.2352 -1.0005 31 1 4.3701 0.0989 4.3195 32 1 5.7550 -3.3391 -0.3301 33 1 5.1362 -3.0061 1.3052 34 1 6.4879 -5.0847 1.2713 35 1 4.7886 -5.4347 1.6674 36 1 6.0625 -5.6977 -1.0938 37 1 5.6622 -7.0459 -0.0025 38 1 4.1460 -8.0031 -1.7424 39 1 2.8460 -7.0052 -2.4364 40 1 4.7591 -7.1898 -4.0034 41 1 5.8400 -6.5080 -2.7640 42 1 3.4071 -5.1118 -3.9677 43 1 5.1069 -4.7613 -4.3639 44 1 5.5321 -4.1495 -1.9992 45 1 4.2318 -3.1513 -2.6935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285943148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = -8.137459 kcal Electronic energy + Delta-G solvation = -24792.118857 eV Core-core repulsion = 21581.754603 eV Total energy + Delta-G solvation = -3210.364254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87641 -39.94343 -37.11662 -35.91695 -34.46944 -33.48272 -32.90952 -30.97555 -29.95351 -28.22169 -26.91416 -24.79078 -23.24639 -22.95095 -22.05187 -20.70321 -20.02551 -18.71775 -18.39693 -17.85027 -17.23582 -16.46941 -16.35891 -15.81508 -15.74042 -15.53047 -14.94650 -14.77806 -14.58904 -14.41350 -14.08840 -13.84939 -13.59182 -13.43928 -13.04434 -12.95101 -12.82404 -12.70485 -12.55112 -12.08620 -12.04312 -12.00644 -11.63160 -11.55520 -11.43980 -11.26618 -11.19243 -10.99340 -10.95482 -10.61877 -10.60328 -10.11834 -9.72519 -8.52275 -6.09348 1.14461 1.28620 1.38977 1.60271 1.87409 1.89183 2.15382 2.80293 2.94697 3.55108 3.75191 3.78657 3.88059 4.13489 4.19886 4.21544 4.30331 4.38365 4.42423 4.43884 4.55417 4.57878 4.66501 4.72355 4.75736 4.84856 4.88835 4.92346 5.01663 5.04701 5.14466 5.24773 5.26282 5.32300 5.34941 5.39031 5.40622 5.44776 5.48441 5.62273 5.68466 5.74568 5.82269 6.05536 6.24054 6.65301 6.93538 7.38083 7.75284 8.61451 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.006127 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.899634 B = 4568.886792 C = 5265.394583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.232 4.232 3 C 0.197 3.803 4 N -0.474 5.474 5 C -0.331 4.331 6 H 0.089 0.911 7 C 0.032 3.968 8 N -0.891 5.891 9 Si 0.910 3.090 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.262 1.262 13 C 0.484 3.516 14 O -0.601 6.601 15 C -0.073 4.073 16 H 0.073 0.927 17 C -0.110 4.110 18 C -0.111 4.111 19 C -0.109 4.109 20 C -0.079 4.079 21 H 0.065 0.935 22 C -0.107 4.107 23 C -0.115 4.115 24 C -0.113 4.113 25 C -0.126 4.126 26 C -0.051 4.051 27 H 0.046 0.954 28 H 0.258 0.742 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.280 0.720 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -9.509 -8.362 12.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.234 4.234 3 C 0.075 3.925 4 N -0.195 5.195 5 C -0.458 4.458 6 H 0.107 0.893 7 C -0.172 4.172 8 N -0.527 5.527 9 Si 0.736 3.264 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.186 1.186 13 C 0.276 3.724 14 O -0.486 6.486 15 C -0.094 4.094 16 H 0.091 0.909 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.146 4.146 20 C -0.098 4.098 21 H 0.083 0.917 22 C -0.145 4.145 23 C -0.152 4.152 24 C -0.150 4.150 25 C -0.163 4.163 26 C -0.070 4.070 27 H 0.064 0.936 28 H 0.275 0.725 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.937 -9.302 -8.729 12.902 hybrid contribution -0.039 1.346 0.309 1.381 sum 1.898 -7.956 -8.419 11.738 Atomic orbital electron populations 1.25710 0.96524 0.97951 1.00078 1.23934 0.95579 1.02542 1.01297 1.18594 0.85195 0.87832 1.00865 1.43867 1.57397 1.09547 1.08640 1.18867 1.40702 1.01438 0.84791 0.89345 1.25712 0.96590 0.99680 0.95231 1.69827 1.41789 1.35533 1.05577 0.86395 0.79495 0.80598 0.79903 1.18944 1.20490 1.18631 1.21147 0.78249 0.88482 0.84522 1.90431 1.55701 1.84150 1.18335 1.20981 0.99115 0.90644 0.98645 0.90903 1.21523 0.93260 0.98895 1.01067 1.21485 1.01426 0.93692 0.98203 1.21650 0.96208 0.99557 0.97154 1.21118 0.97500 0.93469 0.97697 0.91667 1.21511 0.99628 0.98579 0.94770 1.21562 0.99740 0.95462 0.98466 1.21484 1.00803 0.95713 0.97030 1.21863 0.98721 1.00228 0.95473 1.20797 0.98702 0.93998 0.93528 0.93573 0.72540 0.89865 0.89194 0.91047 0.92950 0.91197 0.91096 0.92405 0.91303 0.90281 0.90243 0.92568 0.90982 0.91262 0.93246 0.92052 0.92284 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.71 19.25 74.32 1.43 -5.28 16 2 C -0.23 -10.21 13.62 31.13 0.42 -9.79 16 3 C 0.20 9.17 4.50 84.58 0.38 9.55 16 4 N -0.47 -23.18 2.20 -645.40 -1.42 -24.60 16 5 C -0.33 -17.10 7.13 84.04 0.60 -16.50 16 6 H 0.09 4.84 6.69 -2.91 -0.02 4.82 16 7 C 0.03 1.68 5.29 84.93 0.45 2.13 16 8 N -0.89 -48.64 13.96 21.66 0.30 -48.34 16 9 Si 0.91 41.01 24.94 68.60 1.71 42.73 16 10 H -0.26 -11.32 6.66 99.48 0.66 -10.66 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 13 C 0.48 22.60 6.73 87.66 0.59 23.19 16 14 O -0.60 -29.57 13.08 -3.06 -0.04 -29.61 16 15 C -0.07 -2.86 1.52 -11.54 -0.02 -2.87 16 16 H 0.07 2.99 7.49 -2.39 -0.02 2.97 16 17 C -0.11 -4.03 4.65 30.59 0.14 -3.89 16 18 C -0.11 -3.17 5.92 30.60 0.18 -2.99 16 19 C -0.11 -2.59 4.59 30.60 0.14 -2.45 16 20 C -0.08 -2.05 2.46 -10.81 -0.03 -2.08 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 22 C -0.11 -2.26 5.45 30.59 0.17 -2.09 16 23 C -0.12 -2.37 5.65 30.60 0.17 -2.20 16 24 C -0.11 -2.94 5.92 30.60 0.18 -2.76 16 25 C -0.13 -4.13 4.27 30.60 0.13 -4.00 16 26 C -0.05 -1.71 1.67 -10.81 -0.02 -1.73 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.26 6.33 7.80 -4.43 -0.03 6.29 16 29 H 0.08 3.88 3.24 -2.38 -0.01 3.87 16 30 H 0.09 4.07 7.52 -2.39 -0.02 4.05 16 31 H 0.28 14.26 8.31 -92.70 -0.77 13.49 16 32 H 0.05 1.93 6.43 -2.39 -0.02 1.91 16 33 H 0.07 3.00 5.64 -2.39 -0.01 2.99 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.64 4.81 -2.39 -0.01 1.63 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.07 1.36 6.43 -2.39 -0.02 1.34 16 42 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 43 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.88 4.81 -2.39 -0.01 1.87 16 45 H 0.06 2.54 5.28 -2.38 -0.01 2.53 16 Total: -1.00 -60.66 329.54 6.42 -54.24 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.93 Total: 29.34 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 4.93 Total: -23.75 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -1.12 Total: -72.94 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.04 Total: -29.61 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 1.71 Total: 42.73 kcal Total: -60.66 6.42 -54.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285943148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.102 kcal (2) G-P(sol) polarization free energy of solvation -60.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds