Wall clock time and date at job start Tue Mar 31 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47195 * 2 1 4 4 H 1.08998 * 109.47509 * 57.67198 * 3 2 1 5 5 C 1.53000 * 109.47411 * 177.67157 * 3 2 1 6 6 N 1.46505 * 109.47200 * 297.67235 * 3 2 1 7 7 C 1.46495 * 120.00286 * 123.66738 * 6 3 2 8 8 C 1.50702 * 109.47197 * 275.79319 * 7 6 3 9 9 C 1.38238 * 119.99784 * 267.86597 * 8 7 6 10 10 C 1.38236 * 119.99782 * 179.76763 * 9 8 7 11 11 C 1.38235 * 119.99964 * 0.50433 * 10 9 8 12 12 C 1.38239 * 119.99913 * 359.74671 * 11 10 9 13 13 C 1.38230 * 120.00108 * 0.02562 * 12 11 10 14 14 C 1.34778 * 119.99678 * 303.67081 * 6 3 2 15 15 O 1.21288 * 119.99882 * 4.96565 * 14 6 3 16 16 C 1.50698 * 120.00182 * 184.97180 * 14 6 3 17 17 C 1.52996 * 109.47343 * 184.82371 * 16 14 6 18 18 C 1.50697 * 109.47017 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00346 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99984 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00022 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99995 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47188 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47080 * 119.99279 * 22 20 18 25 25 H 1.48496 * 109.46712 * 239.99567 * 22 20 18 26 26 H 1.09000 * 109.47231 * 300.00213 * 1 2 3 27 27 H 1.09002 * 109.47008 * 60.00298 * 1 2 3 28 28 H 1.09007 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47231 * 239.99787 * 2 1 3 30 30 H 1.09002 * 109.47008 * 119.99702 * 2 1 3 31 31 H 1.08998 * 109.47350 * 184.74656 * 5 3 2 32 32 H 1.09000 * 109.47048 * 304.74850 * 5 3 2 33 33 H 1.09002 * 109.46917 * 64.74688 * 5 3 2 34 34 H 1.09000 * 109.46960 * 155.78796 * 7 6 3 35 35 H 1.09004 * 109.46680 * 35.79168 * 7 6 3 36 36 H 1.07997 * 119.99908 * 359.97438 * 9 8 7 37 37 H 1.07999 * 119.99775 * 180.22446 * 10 9 8 38 38 H 1.07992 * 119.99822 * 179.72950 * 11 10 9 39 39 H 1.07998 * 119.99529 * 179.97438 * 12 11 10 40 40 H 1.08001 * 120.00224 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.46614 * 304.81928 * 16 14 6 42 42 H 1.09000 * 109.47133 * 64.81207 * 16 14 6 43 43 H 1.09001 * 109.46904 * 299.99380 * 17 16 14 44 44 H 1.08992 * 109.47624 * 59.99281 * 17 16 14 45 45 H 0.96999 * 120.00218 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6430 1.9683 0.8683 5 6 3.5689 1.4429 0.0586 6 7 1.5980 2.1167 -1.2233 7 6 0.8191 3.3544 -1.1369 8 6 -0.6379 3.0189 -0.9475 9 6 -1.4673 2.8960 -2.0466 10 6 -2.8027 2.5836 -1.8731 11 6 -3.3109 2.4042 -0.6001 12 6 -2.4825 2.5323 0.4991 13 6 -1.1462 2.8401 0.3255 14 6 1.9080 1.5982 -2.4281 15 8 2.4740 0.5280 -2.5002 16 6 1.5514 2.3483 -3.6856 17 6 1.9016 1.4941 -4.9056 18 6 1.5456 2.2445 -6.1630 19 1 1.1125 3.2317 -6.0985 20 6 1.7718 1.6702 -7.3960 21 7 2.2987 0.4678 -7.4746 22 14 1.3298 2.6001 -8.9547 23 1 0.7557 3.9220 -8.5966 24 1 2.5508 2.7967 -9.7769 25 1 0.3313 1.8207 -9.7297 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9289 2.4682 0.1436 32 1 3.8994 0.8688 0.9242 33 1 3.9674 0.9920 -0.8503 34 1 0.9437 3.9270 -2.0561 35 1 1.1688 3.9455 -0.2904 36 1 -1.0713 3.0409 -3.0408 37 1 -3.4499 2.4840 -2.7320 38 1 -4.3550 2.1644 -0.4645 39 1 -2.8797 2.3926 1.4937 40 1 -0.4991 2.9405 1.1843 41 1 0.4833 2.5654 -3.6885 42 1 2.1121 3.2823 -3.7228 43 1 2.9697 1.2770 -4.9026 44 1 1.3409 0.5601 -4.8683 45 1 2.4582 0.0640 -8.3420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291115926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:35 Heat of formation + Delta-G solvation = -25.941508 kcal Electronic energy + Delta-G solvation = -23976.298926 eV Core-core repulsion = 20765.162630 eV Total energy + Delta-G solvation = -3211.136296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25377 -38.80520 -35.98870 -34.08981 -33.19528 -31.25427 -30.86937 -30.74855 -29.42202 -26.12480 -25.58671 -23.58747 -22.76635 -22.07076 -21.40002 -20.49218 -18.16773 -17.12663 -16.55278 -16.10644 -15.59291 -15.51615 -14.85006 -14.81007 -14.40763 -13.91296 -13.72850 -13.42629 -13.24734 -13.11847 -13.05269 -12.71315 -12.25456 -12.19353 -12.08141 -11.77329 -11.59199 -11.27947 -11.15441 -11.08248 -10.93081 -10.87468 -10.66703 -10.56770 -10.52187 -9.90029 -9.56249 -9.10095 -8.87034 -8.83761 -8.67168 -8.35867 -8.28467 -5.95244 -3.99420 1.30597 1.42842 3.25950 3.32532 3.32885 3.40209 3.43098 3.90395 4.47646 4.74271 4.79019 4.88367 4.99835 5.07453 5.16179 5.27779 5.29399 5.39971 5.45937 5.54149 5.56520 5.61172 5.65114 5.73776 5.86097 5.88463 5.97505 6.02681 6.07999 6.19598 6.23407 6.26349 6.41432 6.44975 6.48861 6.55406 6.59545 6.63091 6.91108 7.00591 7.04022 7.75797 7.83268 7.88426 8.08653 8.40195 8.83083 9.09514 9.64179 11.15711 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.005096 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.978241 B = 5492.935155 C = 6716.130465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.147 4.147 3 C 0.152 3.848 4 H 0.074 0.926 5 C -0.167 4.167 6 N -0.614 5.614 7 C 0.148 3.852 8 C -0.101 4.101 9 C -0.103 4.103 10 C -0.119 4.119 11 C -0.120 4.120 12 C -0.126 4.126 13 C -0.102 4.102 14 C 0.516 3.484 15 O -0.525 6.525 16 C -0.134 4.134 17 C 0.038 3.962 18 C -0.525 4.525 19 H 0.055 0.945 20 C 0.059 3.941 21 N -0.889 5.889 22 Si 0.890 3.110 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.024 0.976 44 H 0.021 0.979 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 6.037 18.876 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.185 4.185 3 C 0.049 3.951 4 H 0.092 0.908 5 C -0.225 4.225 6 N -0.349 5.349 7 C 0.025 3.975 8 C -0.103 4.103 9 C -0.122 4.122 10 C -0.137 4.137 11 C -0.138 4.138 12 C -0.144 4.144 13 C -0.121 4.121 14 C 0.307 3.693 15 O -0.400 6.400 16 C -0.174 4.174 17 C 0.001 3.999 18 C -0.563 4.563 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.718 3.282 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.042 0.958 44 H 0.040 0.960 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.837 5.316 18.699 20.607 hybrid contribution -0.400 0.463 -0.806 1.012 sum -7.237 5.779 17.893 20.148 Atomic orbital electron populations 1.21808 0.95803 1.00849 1.01635 1.22047 0.96205 0.96506 1.03766 1.20944 0.94199 0.93480 0.86492 0.90753 1.22166 0.95544 1.01549 1.03227 1.48227 1.54839 1.25798 1.06039 1.20473 0.86614 0.86614 1.03810 1.20274 0.96036 1.00534 0.93414 1.21335 0.93620 0.98201 0.99004 1.21186 0.95667 0.99564 0.97242 1.21126 0.99596 1.00284 0.92835 1.21048 0.93921 1.00867 0.98542 1.20936 0.95252 0.99521 0.96377 1.21437 0.77454 0.85856 0.84596 1.90581 1.41295 1.21536 1.86578 1.22006 1.01698 1.00413 0.93270 1.18883 0.97906 0.94366 0.88750 1.21247 1.41732 1.02318 0.91030 0.92656 1.25011 0.95272 0.94900 0.99105 1.70005 1.43715 1.14639 1.24433 0.86574 0.78112 0.79942 0.83571 1.19753 1.21029 1.21048 0.93498 0.92176 0.93688 0.88536 0.92288 0.92995 0.92230 0.90669 0.88717 0.90199 0.85202 0.86019 0.86489 0.86526 0.86598 0.90508 0.90322 0.95773 0.96035 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.66 37.16 0.32 -1.63 16 2 C -0.15 -2.08 5.21 -26.73 -0.14 -2.22 16 3 C 0.15 1.97 2.69 -67.93 -0.18 1.79 16 4 H 0.07 0.79 7.80 -51.93 -0.40 0.38 16 5 C -0.17 -2.16 9.23 37.16 0.34 -1.82 16 6 N -0.61 -8.86 1.76 -167.47 -0.30 -9.16 16 7 C 0.15 1.72 5.32 -5.20 -0.03 1.69 16 8 C -0.10 -1.19 3.87 -104.62 -0.40 -1.59 16 9 C -0.10 -1.33 9.40 -39.58 -0.37 -1.70 16 10 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 11 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 12 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 13 C -0.10 -1.06 7.35 -39.59 -0.29 -1.35 16 14 C 0.52 9.84 7.04 -10.99 -0.08 9.76 16 15 O -0.52 -11.89 12.21 5.55 0.07 -11.82 16 16 C -0.13 -2.71 4.03 -27.89 -0.11 -2.83 16 17 C 0.04 1.03 4.28 -27.89 -0.12 0.91 16 18 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.37 13.29 55.43 0.74 -26.64 16 22 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 26 H 0.05 0.55 6.85 -51.93 -0.36 0.19 16 27 H 0.06 0.94 6.07 -51.93 -0.32 0.62 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.10 1.73 5.68 -51.93 -0.30 1.44 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.23 6.51 -51.93 -0.34 0.89 16 34 H 0.09 1.10 6.22 -51.93 -0.32 0.78 16 35 H 0.08 0.73 8.03 -51.93 -0.42 0.32 16 36 H 0.13 1.78 5.80 -52.49 -0.30 1.47 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.12 1.01 7.96 -52.49 -0.42 0.59 16 41 H 0.08 1.42 5.15 -51.93 -0.27 1.15 16 42 H 0.08 1.47 7.84 -51.93 -0.41 1.07 16 43 H 0.02 0.71 8.05 -51.93 -0.42 0.29 16 44 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -32.65 352.80 -9.05 -41.69 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.19 Total: 1.57 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -2.67 Total: -17.54 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.44 Total: -35.79 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.82 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.65 -9.05 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291115926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.752 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds