Wall clock time and date at job start Tue Mar 31 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47195 * 2 1 4 4 H 1.08998 * 109.47509 * 57.67198 * 3 2 1 5 5 C 1.53000 * 109.47411 * 177.67157 * 3 2 1 6 6 N 1.46505 * 109.47200 * 297.67235 * 3 2 1 7 7 C 1.46495 * 120.00286 * 123.66738 * 6 3 2 8 8 C 1.50702 * 109.47197 * 275.79319 * 7 6 3 9 9 C 1.38238 * 119.99784 * 267.86597 * 8 7 6 10 10 C 1.38236 * 119.99782 * 179.76763 * 9 8 7 11 11 C 1.38235 * 119.99964 * 0.50433 * 10 9 8 12 12 C 1.38239 * 119.99913 * 359.74671 * 11 10 9 13 13 C 1.38230 * 120.00108 * 0.02562 * 12 11 10 14 14 C 1.34778 * 119.99678 * 303.67081 * 6 3 2 15 15 O 1.21288 * 119.99882 * 4.96565 * 14 6 3 16 16 C 1.50698 * 120.00182 * 184.97180 * 14 6 3 17 17 C 1.52996 * 109.47343 * 184.82371 * 16 14 6 18 18 C 1.50697 * 109.47017 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00346 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99984 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00022 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99995 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47188 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47080 * 119.99279 * 22 20 18 25 25 H 1.48496 * 109.46712 * 239.99567 * 22 20 18 26 26 H 1.09000 * 109.47231 * 300.00213 * 1 2 3 27 27 H 1.09002 * 109.47008 * 60.00298 * 1 2 3 28 28 H 1.09007 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47231 * 239.99787 * 2 1 3 30 30 H 1.09002 * 109.47008 * 119.99702 * 2 1 3 31 31 H 1.08998 * 109.47350 * 184.74656 * 5 3 2 32 32 H 1.09000 * 109.47048 * 304.74850 * 5 3 2 33 33 H 1.09002 * 109.46917 * 64.74688 * 5 3 2 34 34 H 1.09000 * 109.46960 * 155.78796 * 7 6 3 35 35 H 1.09004 * 109.46680 * 35.79168 * 7 6 3 36 36 H 1.07997 * 119.99908 * 359.97438 * 9 8 7 37 37 H 1.07999 * 119.99775 * 180.22446 * 10 9 8 38 38 H 1.07992 * 119.99822 * 179.72950 * 11 10 9 39 39 H 1.07998 * 119.99529 * 179.97438 * 12 11 10 40 40 H 1.08001 * 120.00224 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.46614 * 304.81928 * 16 14 6 42 42 H 1.09000 * 109.47133 * 64.81207 * 16 14 6 43 43 H 1.09001 * 109.46904 * 299.99380 * 17 16 14 44 44 H 1.08992 * 109.47624 * 59.99281 * 17 16 14 45 45 H 0.96999 * 120.00218 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6430 1.9683 0.8683 5 6 3.5689 1.4429 0.0586 6 7 1.5980 2.1167 -1.2233 7 6 0.8191 3.3544 -1.1369 8 6 -0.6379 3.0189 -0.9475 9 6 -1.4673 2.8960 -2.0466 10 6 -2.8027 2.5836 -1.8731 11 6 -3.3109 2.4042 -0.6001 12 6 -2.4825 2.5323 0.4991 13 6 -1.1462 2.8401 0.3255 14 6 1.9080 1.5982 -2.4281 15 8 2.4740 0.5280 -2.5002 16 6 1.5514 2.3483 -3.6856 17 6 1.9016 1.4941 -4.9056 18 6 1.5456 2.2445 -6.1630 19 1 1.1125 3.2317 -6.0985 20 6 1.7718 1.6702 -7.3960 21 7 2.2987 0.4678 -7.4746 22 14 1.3298 2.6001 -8.9547 23 1 0.7557 3.9220 -8.5966 24 1 2.5508 2.7967 -9.7769 25 1 0.3313 1.8207 -9.7297 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9289 2.4682 0.1436 32 1 3.8994 0.8688 0.9242 33 1 3.9674 0.9920 -0.8503 34 1 0.9437 3.9270 -2.0561 35 1 1.1688 3.9455 -0.2904 36 1 -1.0713 3.0409 -3.0408 37 1 -3.4499 2.4840 -2.7320 38 1 -4.3550 2.1644 -0.4645 39 1 -2.8797 2.3926 1.4937 40 1 -0.4991 2.9405 1.1843 41 1 0.4833 2.5654 -3.6885 42 1 2.1121 3.2823 -3.7228 43 1 2.9697 1.2770 -4.9026 44 1 1.3409 0.5601 -4.8683 45 1 2.4582 0.0640 -8.3420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291115926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:34 Heat of formation + Delta-G solvation = -43.442942 kcal Electronic energy + Delta-G solvation = -23977.057845 eV Core-core repulsion = 20765.162630 eV Total energy + Delta-G solvation = -3211.895215 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.47816 -39.80973 -37.31515 -35.69275 -34.83407 -32.77047 -32.16988 -31.67354 -30.55132 -27.84691 -26.81289 -24.89190 -23.96505 -23.24965 -22.44714 -21.89777 -19.61242 -18.65126 -17.86460 -17.41439 -17.01777 -16.60523 -16.39991 -15.98665 -15.74759 -15.14418 -15.12379 -14.50247 -14.42244 -14.28454 -14.16402 -14.03664 -13.80971 -13.49333 -13.20800 -13.13994 -12.88853 -12.76704 -12.65887 -12.45054 -12.20663 -12.09055 -12.01401 -11.79130 -11.76639 -11.59608 -11.47836 -11.25579 -10.58352 -10.26303 -9.70002 -9.68934 -9.48602 -8.18682 -6.32613 0.45587 0.59321 1.40547 1.41912 1.55118 1.78146 2.15765 2.42273 3.02092 3.14403 3.71683 3.90553 3.94759 4.09307 4.15696 4.21548 4.27534 4.29680 4.34023 4.48195 4.52925 4.54483 4.66115 4.70149 4.77293 4.79064 4.83628 4.86975 5.01864 5.05568 5.13854 5.19520 5.24049 5.31676 5.38191 5.45477 5.49581 5.62117 5.64983 5.69937 5.72454 5.84188 5.92579 6.17359 6.19922 6.50651 6.86017 7.36748 7.40346 8.94225 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.005096 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.978241 B = 5492.935155 C = 6716.130465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.147 4.147 3 C 0.149 3.851 4 H 0.118 0.882 5 C -0.163 4.163 6 N -0.598 5.598 7 C 0.141 3.859 8 C -0.108 4.108 9 C -0.128 4.128 10 C -0.136 4.136 11 C -0.124 4.124 12 C -0.124 4.124 13 C -0.100 4.100 14 C 0.514 3.486 15 O -0.572 6.572 16 C -0.124 4.124 17 C 0.048 3.952 18 C -0.540 4.540 19 H 0.073 0.927 20 C -0.005 4.005 21 N -0.937 5.937 22 Si 0.971 3.029 23 H -0.253 1.253 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.095 0.905 42 H 0.097 0.903 43 H -0.018 1.018 44 H -0.023 1.023 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.646 8.506 21.490 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.185 4.185 3 C 0.047 3.953 4 H 0.136 0.864 5 C -0.221 4.221 6 N -0.331 5.331 7 C 0.019 3.981 8 C -0.109 4.109 9 C -0.147 4.147 10 C -0.154 4.154 11 C -0.142 4.142 12 C -0.142 4.142 13 C -0.118 4.118 14 C 0.304 3.696 15 O -0.451 6.451 16 C -0.163 4.163 17 C 0.011 3.989 18 C -0.578 4.578 19 H 0.091 0.909 20 C -0.202 4.202 21 N -0.578 5.578 22 Si 0.795 3.205 23 H -0.176 1.176 24 H -0.205 1.205 25 H -0.206 1.206 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.109 0.891 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.000 1.000 44 H -0.004 1.004 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.271 7.832 21.357 24.205 hybrid contribution -0.002 -0.342 -1.538 1.576 sum -8.273 7.490 19.819 22.745 Atomic orbital electron populations 1.21738 0.95227 1.00639 1.01691 1.21994 0.96635 0.97273 1.02583 1.21195 0.94331 0.93063 0.86692 0.86397 1.22130 0.95479 1.02463 1.02029 1.48123 1.53719 1.26271 1.04963 1.20776 0.86484 0.85358 1.05449 1.20252 0.95645 1.01155 0.93855 1.21334 0.94608 0.99984 0.98737 1.21333 0.95476 1.00272 0.98354 1.21415 1.00841 0.99532 0.92384 1.21419 0.93732 0.99499 0.99558 1.21230 0.95889 0.98384 0.96315 1.21123 0.77418 0.85190 0.85829 1.90585 1.43648 1.23447 1.87428 1.21763 1.03041 0.99826 0.91675 1.18625 0.94428 0.93747 0.92127 1.21706 1.41408 1.03028 0.91619 0.90860 1.26104 0.94913 0.95771 1.03427 1.70184 1.45168 1.16843 1.25560 0.85313 0.77892 0.79063 0.78237 1.17615 1.20548 1.20616 0.90611 0.94616 0.94221 0.93205 0.89980 0.91428 0.90007 0.94969 0.89090 0.86298 0.87211 0.85985 0.84564 0.83732 0.83860 0.88741 0.88473 1.00007 1.00431 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.66 71.98 0.62 -2.84 16 2 C -0.15 -4.00 5.21 30.59 0.16 -3.84 16 3 C 0.15 3.51 2.69 44.99 0.12 3.63 16 4 H 0.12 1.84 7.80 -2.39 -0.02 1.82 16 5 C -0.16 -3.97 9.23 71.98 0.66 -3.30 16 6 N -0.60 -16.60 1.76 -802.13 -1.41 -18.01 16 7 C 0.14 2.92 5.32 85.63 0.46 3.37 16 8 C -0.11 -2.29 3.87 -19.86 -0.08 -2.37 16 9 C -0.13 -3.26 9.40 22.27 0.21 -3.05 16 10 C -0.14 -3.14 10.05 22.27 0.22 -2.92 16 11 C -0.12 -2.30 10.05 22.27 0.22 -2.07 16 12 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 13 C -0.10 -1.65 7.35 22.27 0.16 -1.49 16 14 C 0.51 20.42 7.04 87.66 0.62 21.03 16 15 O -0.57 -27.93 12.21 -3.05 -0.04 -27.97 16 16 C -0.12 -5.20 4.03 29.85 0.12 -5.08 16 17 C 0.05 2.76 4.28 29.85 0.13 2.89 16 18 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 19 H 0.07 3.89 7.74 -2.91 -0.02 3.86 16 20 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 21 N -0.94 -60.33 13.29 21.45 0.28 -60.05 16 22 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 23 H -0.25 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 26 H 0.08 1.46 6.85 -2.39 -0.02 1.45 16 27 H 0.03 1.08 6.07 -2.39 -0.01 1.07 16 28 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.05 1.87 5.68 -2.39 -0.01 1.86 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.03 1.07 6.51 -2.39 -0.02 1.05 16 34 H 0.09 1.96 6.22 -2.39 -0.01 1.95 16 35 H 0.12 1.59 8.03 -2.38 -0.02 1.57 16 36 H 0.11 3.13 5.80 -2.91 -0.02 3.11 16 37 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 38 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.14 1.59 7.96 -2.91 -0.02 1.56 16 41 H 0.09 3.62 5.15 -2.39 -0.01 3.61 16 42 H 0.10 3.68 7.84 -2.39 -0.02 3.66 16 43 H -0.02 -1.20 8.05 -2.39 -0.02 -1.22 16 44 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 45 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -77.48 352.80 6.37 -71.11 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.96 Total: 16.63 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 4.55 Total: -28.63 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -1.13 Total: -78.06 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.04 Total: -27.97 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -77.48 6.37 -71.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291115926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.666 kcal (2) G-P(sol) polarization free energy of solvation -77.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds