Wall clock time and date at job start Tue Mar 31 2020 06:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00598 * 2 1 4 4 N 1.46896 * 109.47011 * 123.71878 * 3 2 1 5 5 C 1.46891 * 111.00218 * 300.34448 * 4 3 2 6 6 C 1.50706 * 109.47264 * 288.13735 * 5 4 3 7 7 H 1.07998 * 119.99903 * 4.84673 * 6 5 4 8 8 C 1.37877 * 119.99970 * 184.84027 * 6 5 4 9 9 N 1.31509 * 120.00174 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99575 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47481 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46936 * 120.00002 * 10 8 6 13 13 H 1.48502 * 109.46689 * 239.99811 * 10 8 6 14 14 C 1.46896 * 111.00056 * 64.29943 * 4 3 2 15 15 C 1.50710 * 109.47250 * 66.04267 * 14 4 3 16 16 C 1.38261 * 119.94328 * 270.30352 * 15 14 4 17 17 C 1.38144 * 120.05665 * 180.29928 * 16 15 14 18 18 C 1.38733 * 119.93890 * 359.42185 * 17 16 15 19 19 O 1.35902 * 120.05547 * 180.30394 * 18 17 16 20 20 C 1.42894 * 117.00084 * 357.31847 * 19 18 17 21 21 C 1.52997 * 109.47446 * 90.21800 * 20 19 18 22 22 C 1.52996 * 109.47599 * 210.22068 * 20 19 18 23 23 C 1.38732 * 119.89119 * 0.27394 * 18 17 16 24 24 C 1.38140 * 119.94175 * 0.02562 * 23 18 17 25 25 H 1.07998 * 119.99228 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00116 * 179.97438 * 1 2 3 27 27 H 1.08007 * 119.99771 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46697 * 3.71733 * 3 2 1 29 29 H 1.08999 * 109.47402 * 243.72355 * 3 2 1 30 30 H 1.09000 * 109.47617 * 48.13745 * 5 4 3 31 31 H 1.09006 * 109.47206 * 168.14160 * 5 4 3 32 32 H 0.97007 * 120.00378 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.47389 * 306.04750 * 14 4 3 34 34 H 1.08994 * 109.47184 * 186.04414 * 14 4 3 35 35 H 1.08005 * 119.97740 * 0.02562 * 16 15 14 36 36 H 1.08001 * 120.03519 * 179.69572 * 17 16 15 37 37 H 1.09004 * 109.47146 * 330.22105 * 20 19 18 38 38 H 1.09000 * 109.47025 * 300.00784 * 21 20 19 39 39 H 1.09004 * 109.46699 * 60.00032 * 21 20 19 40 40 H 1.08995 * 109.47504 * 180.02562 * 21 20 19 41 41 H 1.09006 * 109.47099 * 59.99594 * 22 20 19 42 42 H 1.08997 * 109.47651 * 179.97438 * 22 20 19 43 43 H 1.09000 * 109.47320 * 300.00425 * 22 20 19 44 44 H 1.08003 * 120.02807 * 180.02562 * 23 18 17 45 45 H 1.08005 * 119.97277 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 7 2.9743 1.3445 1.1520 5 6 2.2326 1.2212 2.4139 6 6 1.4708 2.4950 2.6754 7 1 1.4684 3.2839 1.9378 8 6 0.7769 2.6533 3.8563 9 7 0.7794 1.6924 4.7542 10 14 -0.1678 4.2319 4.1800 11 1 -0.0129 5.1480 3.0216 12 1 -1.6061 3.9171 4.3739 13 1 0.3649 4.8857 5.4023 14 6 4.0056 0.3041 1.0437 15 6 4.9005 0.6041 -0.1312 16 6 4.5866 0.1067 -1.3825 17 6 5.4085 0.3750 -2.4599 18 6 6.5433 1.1543 -2.2879 19 8 7.3502 1.4249 -3.3474 20 6 7.0023 0.8263 -4.5974 21 6 6.0717 1.7632 -5.3701 22 6 8.2714 0.5793 -5.4155 23 6 6.8527 1.6574 -1.0326 24 6 6.0309 1.3810 0.0428 25 1 -0.5399 0.9354 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3573 2.1324 0.0666 29 1 2.6394 1.3922 -0.9215 30 1 1.5337 0.3877 2.3446 31 1 2.9321 1.0421 3.2305 32 1 0.2915 1.8039 5.5852 33 1 3.5296 -0.6658 0.8995 34 1 4.5997 0.2849 1.9573 35 1 3.7003 -0.4958 -1.5170 36 1 5.1656 -0.0177 -3.4362 37 1 6.4956 -0.1219 -4.4176 38 1 5.1676 1.9392 -4.7873 39 1 6.5784 2.7114 -5.5499 40 1 5.8060 1.3064 -6.3234 41 1 8.9344 -0.0882 -4.8650 42 1 8.0060 0.1223 -6.3688 43 1 8.7781 1.5275 -5.5953 44 1 7.7354 2.2647 -0.8962 45 1 6.2715 1.7721 1.0204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292123847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:50 Heat of formation + Delta-G solvation = 7.681669 kcal Electronic energy + Delta-G solvation = -22827.266169 eV Core-core repulsion = 19617.587884 eV Total energy + Delta-G solvation = -3209.678285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26249 -38.37240 -36.65171 -33.46686 -32.80996 -32.22014 -30.78720 -30.10020 -27.56987 -26.98635 -25.96163 -23.89264 -23.11554 -21.68006 -20.94077 -20.41230 -18.77920 -18.29907 -16.26495 -16.01926 -15.50817 -15.20431 -15.02546 -14.74485 -14.53486 -14.26660 -14.03278 -13.65496 -13.33005 -13.23301 -12.86825 -12.67745 -12.57772 -12.38291 -12.17979 -11.86014 -11.45003 -11.30992 -11.22032 -11.08154 -10.92944 -10.76103 -10.69264 -10.51600 -10.47192 -10.39497 -9.84861 -9.20393 -8.82349 -8.70006 -8.38345 -7.89885 -7.18124 -5.98355 -3.98449 1.54478 1.62696 2.87689 3.15013 3.33010 3.40545 3.45566 3.93916 4.47095 4.51140 4.66584 4.77466 4.98007 5.03808 5.16779 5.24632 5.30298 5.32340 5.39953 5.44966 5.47532 5.51749 5.57879 5.63018 5.72619 5.81627 5.88184 5.91001 6.01195 6.11001 6.23466 6.30982 6.41335 6.46961 6.54482 6.68393 6.96203 6.97804 7.15106 7.28905 7.33498 7.44337 7.52062 7.84983 8.12861 8.25473 8.58408 9.08643 9.64891 11.12445 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024055 B = 0.003320 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.722816 B = 8432.190905 C = 8693.190245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.180 4.180 3 C 0.086 3.914 4 N -0.522 5.522 5 C 0.190 3.810 6 C -0.498 4.498 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.089 3.911 15 C -0.096 4.096 16 C -0.075 4.075 17 C -0.214 4.214 18 C 0.119 3.881 19 O -0.314 6.314 20 C 0.074 3.926 21 C -0.177 4.177 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.060 4.060 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.065 0.935 30 H -0.001 1.001 31 H 0.029 0.971 32 H 0.259 0.741 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.125 0.875 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.996 -4.579 -18.148 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.200 4.200 3 C -0.042 4.042 4 N -0.245 5.245 5 C 0.065 3.935 6 C -0.537 4.537 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.038 4.038 15 C -0.097 4.097 16 C -0.094 4.094 17 C -0.232 4.232 18 C 0.075 3.925 19 O -0.229 6.229 20 C 0.018 3.982 21 C -0.234 4.234 22 C -0.206 4.206 23 C -0.173 4.173 24 C -0.078 4.078 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.017 0.983 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.143 0.857 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.347 -4.025 -17.959 21.621 hybrid contribution -1.256 -0.172 0.273 1.297 sum 10.091 -4.197 -17.686 20.790 Atomic orbital electron populations 1.23704 0.96056 1.01121 1.00952 1.23566 0.96695 0.99858 0.99891 1.21305 0.94685 0.94120 0.94073 1.62462 1.13660 1.44308 1.04033 1.19797 0.92315 0.96827 0.84550 1.21159 1.28749 1.01473 1.02325 0.92034 1.24955 0.96914 0.96607 0.96117 1.69964 1.43069 1.32535 1.08408 0.86498 0.79469 0.83592 0.78214 1.19693 1.21214 1.21080 1.21021 0.93575 0.93939 0.95310 1.19886 0.96046 0.98747 0.95027 1.20871 0.98094 0.98569 0.91854 1.21131 0.97154 1.04925 1.00005 1.18942 0.90417 0.95762 0.87427 1.86097 1.50788 1.69283 1.16690 1.22414 0.96773 0.96509 0.82509 1.22320 1.00074 1.00582 1.00454 1.21873 0.96725 1.02792 0.99258 1.20388 1.02271 1.04546 0.90122 1.20895 0.93139 0.95414 0.98373 0.88469 0.89717 0.88698 0.90055 0.91697 0.98344 0.95269 0.93099 0.94845 0.90580 0.86187 0.85864 0.90735 0.91721 0.91528 0.91229 0.91780 0.90752 0.91553 0.85666 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 14.32 29.01 0.42 -2.72 16 2 C -0.18 -3.22 7.29 -36.03 -0.26 -3.48 16 3 C 0.09 1.66 5.31 -4.98 -0.03 1.63 16 4 N -0.52 -11.09 4.65 -238.97 -1.11 -12.21 16 5 C 0.19 4.87 4.58 -4.98 -0.02 4.85 16 6 C -0.50 -13.94 8.67 -34.44 -0.30 -14.23 16 7 H 0.06 1.73 7.33 -52.49 -0.38 1.34 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 10 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 14 C 0.09 1.60 4.95 -4.97 -0.02 1.58 16 15 C -0.10 -1.52 4.90 -104.60 -0.51 -2.03 16 16 C -0.08 -1.07 7.88 -39.61 -0.31 -1.38 16 17 C -0.21 -2.77 8.63 -39.43 -0.34 -3.11 16 18 C 0.12 1.63 6.66 -39.22 -0.26 1.37 16 19 O -0.31 -3.94 9.78 -19.43 -0.19 -4.13 16 20 C 0.07 0.69 2.83 -26.73 -0.08 0.61 16 21 C -0.18 -1.49 9.39 37.16 0.35 -1.14 16 22 C -0.15 -1.07 9.56 37.16 0.36 -0.71 16 23 C -0.15 -2.16 9.99 -39.43 -0.39 -2.55 16 24 C -0.06 -0.89 9.69 -39.61 -0.38 -1.28 16 25 H 0.10 1.73 7.84 -52.49 -0.41 1.32 16 26 H 0.08 1.31 8.06 -52.49 -0.42 0.89 16 27 H 0.10 1.58 6.82 -52.48 -0.36 1.22 16 28 H 0.08 1.71 6.83 -51.93 -0.35 1.36 16 29 H 0.06 1.14 5.84 -51.93 -0.30 0.84 16 30 H 0.00 -0.03 6.70 -51.93 -0.35 -0.38 16 31 H 0.03 0.81 7.81 -51.93 -0.41 0.40 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.03 0.58 6.30 -51.93 -0.33 0.26 16 34 H 0.08 1.37 7.80 -51.93 -0.41 0.96 16 35 H 0.12 1.60 7.83 -52.48 -0.41 1.18 16 36 H 0.12 1.33 5.75 -52.49 -0.30 1.02 16 37 H 0.07 0.65 5.83 -51.93 -0.30 0.35 16 38 H 0.06 0.62 7.75 -51.93 -0.40 0.22 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 45 H 0.13 1.86 8.06 -52.48 -0.42 1.43 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -30.40 362.31 -9.25 -39.65 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.23 Total: 1.62 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -1.89 Total: -21.14 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.37 Total: -38.23 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.19 Total: -4.13 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.40 -9.25 -39.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292123847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.332 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds