Wall clock time and date at job start Tue Mar 31 2020 06:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00598 * 2 1 4 4 N 1.46896 * 109.47011 * 123.71878 * 3 2 1 5 5 C 1.46891 * 111.00218 * 300.34448 * 4 3 2 6 6 C 1.50706 * 109.47264 * 288.13735 * 5 4 3 7 7 H 1.07998 * 119.99903 * 4.84673 * 6 5 4 8 8 C 1.37877 * 119.99970 * 184.84027 * 6 5 4 9 9 N 1.31509 * 120.00174 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99575 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47481 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46936 * 120.00002 * 10 8 6 13 13 H 1.48502 * 109.46689 * 239.99811 * 10 8 6 14 14 C 1.46896 * 111.00056 * 64.29943 * 4 3 2 15 15 C 1.50710 * 109.47250 * 66.04267 * 14 4 3 16 16 C 1.38261 * 119.94328 * 270.30352 * 15 14 4 17 17 C 1.38144 * 120.05665 * 180.29928 * 16 15 14 18 18 C 1.38733 * 119.93890 * 359.42185 * 17 16 15 19 19 O 1.35902 * 120.05547 * 180.30394 * 18 17 16 20 20 C 1.42894 * 117.00084 * 357.31847 * 19 18 17 21 21 C 1.52997 * 109.47446 * 90.21800 * 20 19 18 22 22 C 1.52996 * 109.47599 * 210.22068 * 20 19 18 23 23 C 1.38732 * 119.89119 * 0.27394 * 18 17 16 24 24 C 1.38140 * 119.94175 * 0.02562 * 23 18 17 25 25 H 1.07998 * 119.99228 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00116 * 179.97438 * 1 2 3 27 27 H 1.08007 * 119.99771 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46697 * 3.71733 * 3 2 1 29 29 H 1.08999 * 109.47402 * 243.72355 * 3 2 1 30 30 H 1.09000 * 109.47617 * 48.13745 * 5 4 3 31 31 H 1.09006 * 109.47206 * 168.14160 * 5 4 3 32 32 H 0.97007 * 120.00378 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.47389 * 306.04750 * 14 4 3 34 34 H 1.08994 * 109.47184 * 186.04414 * 14 4 3 35 35 H 1.08005 * 119.97740 * 0.02562 * 16 15 14 36 36 H 1.08001 * 120.03519 * 179.69572 * 17 16 15 37 37 H 1.09004 * 109.47146 * 330.22105 * 20 19 18 38 38 H 1.09000 * 109.47025 * 300.00784 * 21 20 19 39 39 H 1.09004 * 109.46699 * 60.00032 * 21 20 19 40 40 H 1.08995 * 109.47504 * 180.02562 * 21 20 19 41 41 H 1.09006 * 109.47099 * 59.99594 * 22 20 19 42 42 H 1.08997 * 109.47651 * 179.97438 * 22 20 19 43 43 H 1.09000 * 109.47320 * 300.00425 * 22 20 19 44 44 H 1.08003 * 120.02807 * 180.02562 * 23 18 17 45 45 H 1.08005 * 119.97277 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 7 2.9743 1.3445 1.1520 5 6 2.2326 1.2212 2.4139 6 6 1.4708 2.4950 2.6754 7 1 1.4684 3.2839 1.9378 8 6 0.7769 2.6533 3.8563 9 7 0.7794 1.6924 4.7542 10 14 -0.1678 4.2319 4.1800 11 1 -0.0129 5.1480 3.0216 12 1 -1.6061 3.9171 4.3739 13 1 0.3649 4.8857 5.4023 14 6 4.0056 0.3041 1.0437 15 6 4.9005 0.6041 -0.1312 16 6 4.5866 0.1067 -1.3825 17 6 5.4085 0.3750 -2.4599 18 6 6.5433 1.1543 -2.2879 19 8 7.3502 1.4249 -3.3474 20 6 7.0023 0.8263 -4.5974 21 6 6.0717 1.7632 -5.3701 22 6 8.2714 0.5793 -5.4155 23 6 6.8527 1.6574 -1.0326 24 6 6.0309 1.3810 0.0428 25 1 -0.5399 0.9354 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3573 2.1324 0.0666 29 1 2.6394 1.3922 -0.9215 30 1 1.5337 0.3877 2.3446 31 1 2.9321 1.0421 3.2305 32 1 0.2915 1.8039 5.5852 33 1 3.5296 -0.6658 0.8995 34 1 4.5997 0.2849 1.9573 35 1 3.7003 -0.4958 -1.5170 36 1 5.1656 -0.0177 -3.4362 37 1 6.4956 -0.1219 -4.4176 38 1 5.1676 1.9392 -4.7873 39 1 6.5784 2.7114 -5.5499 40 1 5.8060 1.3064 -6.3234 41 1 8.9344 -0.0882 -4.8650 42 1 8.0060 0.1223 -6.3688 43 1 8.7781 1.5275 -5.5953 44 1 7.7354 2.2647 -0.8962 45 1 6.2715 1.7721 1.0204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292123847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:49 Heat of formation + Delta-G solvation = -8.956324 kcal Electronic energy + Delta-G solvation = -22827.987647 eV Core-core repulsion = 19617.587884 eV Total energy + Delta-G solvation = -3210.399763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27714 -39.64444 -38.00081 -34.85020 -34.30942 -33.66473 -31.86775 -31.49228 -28.89805 -28.16260 -27.37541 -25.51362 -24.23961 -22.94815 -22.46449 -21.42840 -20.25904 -19.23917 -18.35073 -17.18898 -16.80068 -16.45081 -16.27411 -16.13810 -16.01798 -15.63300 -15.22997 -14.92330 -14.51103 -14.32062 -14.14901 -13.98599 -13.61913 -13.31670 -13.18962 -13.03958 -12.92574 -12.82012 -12.63925 -12.52664 -12.32718 -12.24417 -12.12787 -12.05423 -11.82630 -11.61231 -11.38064 -11.21824 -10.58568 -10.19615 -9.86628 -9.07053 -8.83573 -8.15664 -6.24091 0.45320 0.49259 1.40082 1.41548 1.45896 1.54436 2.29234 2.42111 2.79919 3.16586 3.60241 3.82266 3.87374 3.97388 4.01897 4.05046 4.09397 4.22508 4.26260 4.40162 4.47469 4.55359 4.59566 4.71998 4.77497 4.80528 4.85391 4.90103 4.97800 4.98826 5.10285 5.16094 5.21778 5.25530 5.28693 5.32238 5.40118 5.46315 5.68558 5.73078 5.79845 5.88086 5.92492 6.12550 6.44648 6.55381 6.67163 6.91228 7.44350 8.94710 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024055 B = 0.003320 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.722816 B = 8432.190905 C = 8693.190245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.188 4.188 3 C 0.091 3.909 4 N -0.532 5.532 5 C 0.208 3.792 6 C -0.512 4.512 7 H 0.056 0.944 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.095 3.905 15 C -0.114 4.114 16 C -0.075 4.075 17 C -0.209 4.209 18 C 0.121 3.879 19 O -0.326 6.326 20 C 0.064 3.936 21 C -0.175 4.175 22 C -0.146 4.146 23 C -0.163 4.163 24 C -0.069 4.069 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.058 0.942 29 H 0.084 0.916 30 H -0.021 1.021 31 H 0.000 1.000 32 H 0.262 0.738 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.131 0.869 36 H 0.149 0.851 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.137 0.863 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.122 -4.609 -20.366 23.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.207 4.207 3 C -0.036 4.036 4 N -0.255 5.255 5 C 0.082 3.918 6 C -0.550 4.550 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.206 1.206 14 C -0.032 4.032 15 C -0.114 4.114 16 C -0.094 4.094 17 C -0.227 4.227 18 C 0.075 3.925 19 O -0.240 6.240 20 C 0.008 3.992 21 C -0.232 4.232 22 C -0.203 4.203 23 C -0.181 4.181 24 C -0.087 4.087 25 H 0.106 0.894 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.076 0.924 29 H 0.102 0.898 30 H -0.003 1.003 31 H 0.018 0.982 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.166 0.834 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.155 0.845 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.487 -4.057 -20.206 23.594 hybrid contribution -1.215 -0.187 0.852 1.495 sum 10.273 -4.245 -19.354 22.319 Atomic orbital electron populations 1.23875 0.96086 1.01822 1.00043 1.23552 0.96923 0.99625 1.00649 1.21219 0.94318 0.94214 0.93868 1.62330 1.14044 1.46183 1.02899 1.19398 0.91252 0.95247 0.85919 1.21432 1.29087 1.02097 1.02390 0.92568 1.25797 0.97819 0.99905 0.95875 1.70080 1.43983 1.34537 1.08909 0.85448 0.78141 0.79551 0.78178 1.19001 1.20466 1.20562 1.20959 0.92839 0.93238 0.96206 1.19703 0.96320 1.00569 0.94855 1.20975 0.98620 0.98364 0.91412 1.21352 0.96432 1.04220 1.00710 1.19072 0.90553 0.95151 0.87702 1.86104 1.50784 1.69640 1.17500 1.22760 0.98201 0.96802 0.81419 1.22317 0.99124 1.00510 1.01242 1.21898 0.95669 1.02860 0.99910 1.20531 1.02551 1.04810 0.90227 1.20938 0.93360 0.95608 0.98820 0.89375 0.87477 0.87215 0.92387 0.89788 1.00315 0.98219 0.92868 0.94264 0.91609 0.85153 0.83382 0.89960 0.93072 0.91903 0.88821 0.92039 0.88344 0.91754 0.84522 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.13 14.32 67.78 0.97 -5.16 16 2 C -0.19 -6.58 7.29 25.64 0.19 -6.39 16 3 C 0.09 3.52 5.31 85.56 0.45 3.97 16 4 N -0.53 -23.05 4.65 -909.95 -4.23 -27.28 16 5 C 0.21 11.02 4.58 85.56 0.39 11.41 16 6 C -0.51 -29.19 8.67 25.60 0.22 -28.97 16 7 H 0.06 3.20 7.33 -2.91 -0.02 3.18 16 8 C 0.00 0.21 5.46 84.66 0.46 0.67 16 9 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 10 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 14 C 0.10 3.45 4.95 85.56 0.42 3.88 16 15 C -0.11 -3.54 4.90 -19.85 -0.10 -3.64 16 16 C -0.08 -2.01 7.88 22.25 0.18 -1.84 16 17 C -0.21 -4.96 8.63 22.37 0.19 -4.77 16 18 C 0.12 3.09 6.66 22.51 0.15 3.24 16 19 O -0.33 -7.57 9.78 -92.45 -0.90 -8.47 16 20 C 0.06 1.02 2.83 30.59 0.09 1.10 16 21 C -0.17 -2.49 9.39 71.98 0.68 -1.82 16 22 C -0.15 -1.70 9.56 71.98 0.69 -1.02 16 23 C -0.16 -4.42 9.99 22.36 0.22 -4.19 16 24 C -0.07 -2.05 9.69 22.25 0.22 -1.84 16 25 H 0.09 3.13 7.84 -2.91 -0.02 3.11 16 26 H 0.11 3.13 8.06 -2.91 -0.02 3.11 16 27 H 0.11 3.51 6.82 -2.91 -0.02 3.49 16 28 H 0.06 2.48 6.83 -2.39 -0.02 2.46 16 29 H 0.08 2.88 5.84 -2.39 -0.01 2.87 16 30 H -0.02 -1.17 6.70 -2.39 -0.02 -1.18 16 31 H 0.00 -0.02 7.81 -2.38 -0.02 -0.04 16 32 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 33 H 0.04 1.37 6.30 -2.38 -0.02 1.35 16 34 H 0.07 2.47 7.80 -2.39 -0.02 2.45 16 35 H 0.13 3.19 7.83 -2.91 -0.02 3.16 16 36 H 0.15 2.72 5.75 -2.91 -0.02 2.71 16 37 H 0.08 1.18 5.83 -2.38 -0.01 1.17 16 38 H 0.05 0.87 7.75 -2.39 -0.02 0.85 16 39 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 45 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -65.46 362.31 3.55 -61.91 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.95 Total: 18.41 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 5.42 Total: -35.35 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.94 Total: -83.47 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.90 Total: -8.47 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -65.46 3.55 -61.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292123847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.952 kcal (2) G-P(sol) polarization free energy of solvation -65.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds