Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99822 * 2 1 4 4 N 1.46894 * 109.47350 * 125.14479 * 3 2 1 5 5 C 1.46905 * 111.00134 * 199.64498 * 4 3 2 6 6 C 1.50704 * 109.47258 * 66.04591 * 5 4 3 7 7 H 1.08004 * 119.99705 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99933 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00112 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99574 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47544 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46954 * 120.00340 * 10 8 6 13 13 H 1.48496 * 109.47144 * 239.99991 * 10 8 6 14 14 C 1.46895 * 111.00180 * 75.69230 * 4 3 2 15 15 C 1.53006 * 109.47515 * 199.68843 * 14 4 3 16 16 C 1.52995 * 109.47358 * 174.84836 * 15 14 4 17 17 O 1.42896 * 109.47182 * 179.97438 * 16 15 14 18 18 C 1.42900 * 114.00371 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47431 * 180.02562 * 18 17 16 20 20 C 1.38233 * 120.00152 * 89.99922 * 19 18 17 21 21 C 1.38238 * 119.99942 * 179.97438 * 20 19 18 22 22 C 1.38233 * 120.00049 * 359.97438 * 21 20 19 23 23 C 1.38241 * 119.99844 * 0.27859 * 22 21 20 24 24 C 1.38231 * 119.99797 * 359.51038 * 23 22 21 25 25 H 1.07994 * 120.00575 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99872 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00083 * 179.97438 * 2 1 3 28 28 H 1.09009 * 109.47288 * 5.14134 * 3 2 1 29 29 H 1.09001 * 109.47350 * 245.14877 * 3 2 1 30 30 H 1.08996 * 109.47105 * 186.04507 * 5 4 3 31 31 H 1.09002 * 109.46958 * 306.04670 * 5 4 3 32 32 H 0.97004 * 119.99774 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47443 * 79.68857 * 14 4 3 34 34 H 1.09006 * 109.46770 * 319.68768 * 14 4 3 35 35 H 1.09007 * 109.46726 * 54.84655 * 15 14 4 36 36 H 1.08994 * 109.47033 * 294.85401 * 15 14 4 37 37 H 1.09003 * 109.46876 * 60.00287 * 16 15 14 38 38 H 1.08994 * 109.47509 * 300.00272 * 16 15 14 39 39 H 1.08999 * 109.47054 * 60.00239 * 18 17 16 40 40 H 1.09009 * 109.46912 * 300.00413 * 18 17 16 41 41 H 1.07996 * 119.99958 * 359.97438 * 20 19 18 42 42 H 1.07998 * 120.00156 * 180.02562 * 21 20 19 43 43 H 1.07994 * 119.99960 * 180.02562 * 22 21 20 44 44 H 1.08003 * 119.99651 * 179.72421 * 23 22 21 45 45 H 1.08005 * 119.99579 * 180.27411 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9987 1.3306 1.1324 5 6 3.4015 2.7068 1.4516 6 6 2.2074 3.4758 1.9555 7 1 1.2453 2.9908 2.0306 8 6 2.3429 4.7987 2.3195 9 7 3.5141 5.3897 2.2266 10 14 0.8625 5.7520 2.9434 11 1 -0.3290 4.8659 2.9524 12 1 1.1300 6.2351 4.3219 13 1 0.6099 6.9128 2.0524 14 6 4.1715 0.4873 0.8658 15 6 4.8600 0.1385 2.1869 16 6 6.0037 -0.8428 1.9225 17 8 6.6470 -1.1681 3.1562 18 6 7.7364 -2.0829 3.0203 19 6 8.3369 -2.3540 4.3756 20 6 7.8595 -3.3970 5.1470 21 6 8.4108 -3.6460 6.3900 22 6 9.4397 -2.8524 6.8613 23 6 9.9136 -1.8061 6.0921 24 6 9.3653 -1.5598 4.8473 25 1 -0.5401 0.9352 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0921 29 1 2.6191 1.4039 -0.9325 30 1 4.1738 2.6902 2.2206 31 1 3.7919 3.1884 0.5550 32 1 3.6095 6.3203 2.4830 33 1 4.8685 1.0265 0.2242 34 1 3.8543 -0.4293 0.3683 35 1 4.1378 -0.3190 2.8632 36 1 5.2576 1.0464 2.6401 37 1 6.7258 -0.3853 1.2462 38 1 5.6060 -1.7507 1.4692 39 1 8.4941 -1.6509 2.3666 40 1 7.3749 -3.0169 2.5899 41 1 7.0559 -4.0173 4.7786 42 1 8.0381 -4.4612 6.9925 43 1 9.8706 -3.0472 7.8322 44 1 10.7145 -1.1832 6.4623 45 1 9.7385 -0.7451 4.2445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292222884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = -4.943956 kcal Electronic energy + Delta-G solvation = -21775.885074 eV Core-core repulsion = 18565.659300 eV Total energy + Delta-G solvation = -3210.225774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.50197 -37.90269 -37.04577 -33.48545 -32.90755 -32.09106 -31.05882 -30.77540 -27.24166 -26.37514 -25.21456 -23.51393 -22.74103 -21.71462 -21.34757 -20.12556 -19.06245 -17.05821 -16.60586 -16.32009 -16.12866 -15.58394 -15.15515 -14.99062 -14.68110 -14.28272 -13.91037 -13.74976 -13.57053 -13.20601 -12.92733 -12.71290 -12.46157 -12.19046 -11.90382 -11.72208 -11.41874 -11.20626 -11.18615 -10.88089 -10.82941 -10.72135 -10.57505 -10.45107 -10.13968 -9.76811 -9.53123 -9.16856 -9.07250 -8.98829 -8.87957 -8.41677 -7.23060 -6.00801 -4.01648 1.11070 1.24981 2.75848 3.32592 3.40155 3.43197 3.45319 4.00838 4.45190 4.65420 4.68384 4.84208 4.94918 5.09603 5.10603 5.21938 5.27635 5.34523 5.35518 5.42948 5.49196 5.51721 5.67729 5.71263 5.75303 5.80492 5.87921 5.93959 6.12980 6.16417 6.27932 6.29837 6.33496 6.44813 6.55464 6.62466 6.74391 6.82143 7.06161 7.24919 7.29617 7.34911 7.35579 7.83572 8.11938 8.22013 8.56654 9.06497 9.62492 11.10114 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.002936 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.944146 B = 9533.089355 C =10790.657697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C 0.083 3.917 4 N -0.532 5.532 5 C 0.191 3.809 6 C -0.506 4.506 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.060 3.940 15 C -0.111 4.111 16 C 0.066 3.934 17 O -0.379 6.379 18 C 0.102 3.898 19 C -0.087 4.087 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.098 4.098 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.028 0.972 30 H 0.035 0.965 31 H -0.010 1.010 32 H 0.260 0.740 33 H 0.026 0.974 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.988 -17.695 1.576 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.149 4.149 3 C -0.045 4.045 4 N -0.256 5.256 5 C 0.066 3.934 6 C -0.545 4.545 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.212 1.212 14 C -0.069 4.069 15 C -0.149 4.149 16 C -0.011 4.011 17 O -0.298 6.298 18 C 0.025 3.975 19 C -0.087 4.087 20 C -0.117 4.117 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.116 4.116 25 H 0.114 0.886 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.008 0.992 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.779 -17.616 2.187 20.267 hybrid contribution -0.168 0.841 -0.517 1.001 sum 9.611 -16.776 1.670 19.406 Atomic orbital electron populations 1.23691 0.95974 1.01180 1.03188 1.22988 0.95859 0.98469 0.97535 1.21182 0.96075 0.95531 0.91696 1.62064 1.12854 1.14173 1.36546 1.19800 0.96819 0.81403 0.95359 1.21211 0.95707 0.94972 1.42607 0.91780 1.24985 0.95985 0.97707 0.95934 1.69970 1.22898 1.12149 1.48761 0.86471 0.82923 0.79753 0.78479 1.19633 1.20999 1.21165 1.21900 0.92677 0.97088 0.95196 1.21454 0.95616 0.98972 0.98828 1.22544 0.94870 0.97954 0.85756 1.88004 1.46644 1.63942 1.31226 1.21271 0.89413 0.93279 0.93537 1.19662 0.96593 0.96260 0.96234 1.21081 0.98912 0.97428 0.94300 1.21144 0.97044 1.00041 0.96074 1.21190 0.97078 0.95615 0.99680 1.21161 1.00430 0.97979 0.94638 1.21111 0.96088 0.98344 0.96087 0.88610 0.89328 0.88464 0.88989 0.95414 0.94711 0.99224 0.93014 0.95603 0.92324 0.90531 0.90660 0.93605 0.93668 0.92598 0.92670 0.85932 0.85976 0.86104 0.85918 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.08 14.32 29.02 0.42 -2.66 16 2 C -0.13 -2.14 9.33 -36.02 -0.34 -2.48 16 3 C 0.08 1.62 5.24 -4.98 -0.03 1.59 16 4 N -0.53 -11.49 4.35 -237.51 -1.03 -12.52 16 5 C 0.19 4.98 4.55 -4.97 -0.02 4.96 16 6 C -0.51 -14.28 8.23 -34.44 -0.28 -14.56 16 7 H 0.06 1.80 7.31 -52.48 -0.38 1.42 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 10 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.06 1.07 4.81 -3.82 -0.02 1.05 16 15 C -0.11 -1.91 5.62 -26.73 -0.15 -2.06 16 16 C 0.07 0.92 5.94 37.15 0.22 1.14 16 17 O -0.38 -5.69 10.33 -35.23 -0.36 -6.06 16 18 C 0.10 1.17 6.06 36.00 0.22 1.39 16 19 C -0.09 -1.02 5.51 -104.63 -0.58 -1.60 16 20 C -0.10 -1.06 9.70 -39.58 -0.38 -1.45 16 21 C -0.13 -1.20 10.05 -39.58 -0.40 -1.59 16 22 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 23 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 24 C -0.10 -1.09 9.70 -39.59 -0.38 -1.47 16 25 H 0.10 1.49 7.84 -52.49 -0.41 1.08 16 26 H 0.09 1.14 8.06 -52.48 -0.42 0.72 16 27 H 0.10 1.45 7.27 -52.49 -0.38 1.07 16 28 H 0.09 1.99 6.23 -51.92 -0.32 1.67 16 29 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 30 H 0.03 0.97 6.72 -51.93 -0.35 0.62 16 31 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.03 0.47 8.00 -51.93 -0.42 0.05 16 34 H 0.06 0.91 6.81 -51.93 -0.35 0.55 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.07 1.49 6.95 -51.93 -0.36 1.12 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.06 0.54 8.09 -51.92 -0.42 0.12 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 45 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -31.22 373.92 -10.26 -41.48 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.60 Total: 0.11 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -2.62 Total: -19.37 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.30 Total: -38.61 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.36 Total: -6.06 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.22 -10.26 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292222884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.539 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds