Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99822 * 2 1 4 4 N 1.46894 * 109.47350 * 125.14479 * 3 2 1 5 5 C 1.46905 * 111.00134 * 199.64498 * 4 3 2 6 6 C 1.50704 * 109.47258 * 66.04591 * 5 4 3 7 7 H 1.08004 * 119.99705 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99933 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00112 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99574 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47544 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46954 * 120.00340 * 10 8 6 13 13 H 1.48496 * 109.47144 * 239.99991 * 10 8 6 14 14 C 1.46895 * 111.00180 * 75.69230 * 4 3 2 15 15 C 1.53006 * 109.47515 * 199.68843 * 14 4 3 16 16 C 1.52995 * 109.47358 * 174.84836 * 15 14 4 17 17 O 1.42896 * 109.47182 * 179.97438 * 16 15 14 18 18 C 1.42900 * 114.00371 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47431 * 180.02562 * 18 17 16 20 20 C 1.38233 * 120.00152 * 89.99922 * 19 18 17 21 21 C 1.38238 * 119.99942 * 179.97438 * 20 19 18 22 22 C 1.38233 * 120.00049 * 359.97438 * 21 20 19 23 23 C 1.38241 * 119.99844 * 0.27859 * 22 21 20 24 24 C 1.38231 * 119.99797 * 359.51038 * 23 22 21 25 25 H 1.07994 * 120.00575 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99872 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00083 * 179.97438 * 2 1 3 28 28 H 1.09009 * 109.47288 * 5.14134 * 3 2 1 29 29 H 1.09001 * 109.47350 * 245.14877 * 3 2 1 30 30 H 1.08996 * 109.47105 * 186.04507 * 5 4 3 31 31 H 1.09002 * 109.46958 * 306.04670 * 5 4 3 32 32 H 0.97004 * 119.99774 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47443 * 79.68857 * 14 4 3 34 34 H 1.09006 * 109.46770 * 319.68768 * 14 4 3 35 35 H 1.09007 * 109.46726 * 54.84655 * 15 14 4 36 36 H 1.08994 * 109.47033 * 294.85401 * 15 14 4 37 37 H 1.09003 * 109.46876 * 60.00287 * 16 15 14 38 38 H 1.08994 * 109.47509 * 300.00272 * 16 15 14 39 39 H 1.08999 * 109.47054 * 60.00239 * 18 17 16 40 40 H 1.09009 * 109.46912 * 300.00413 * 18 17 16 41 41 H 1.07996 * 119.99958 * 359.97438 * 20 19 18 42 42 H 1.07998 * 120.00156 * 180.02562 * 21 20 19 43 43 H 1.07994 * 119.99960 * 180.02562 * 22 21 20 44 44 H 1.08003 * 119.99651 * 179.72421 * 23 22 21 45 45 H 1.08005 * 119.99579 * 180.27411 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9987 1.3306 1.1324 5 6 3.4015 2.7068 1.4516 6 6 2.2074 3.4758 1.9555 7 1 1.2453 2.9908 2.0306 8 6 2.3429 4.7987 2.3195 9 7 3.5141 5.3897 2.2266 10 14 0.8625 5.7520 2.9434 11 1 -0.3290 4.8659 2.9524 12 1 1.1300 6.2351 4.3219 13 1 0.6099 6.9128 2.0524 14 6 4.1715 0.4873 0.8658 15 6 4.8600 0.1385 2.1869 16 6 6.0037 -0.8428 1.9225 17 8 6.6470 -1.1681 3.1562 18 6 7.7364 -2.0829 3.0203 19 6 8.3369 -2.3540 4.3756 20 6 7.8595 -3.3970 5.1470 21 6 8.4108 -3.6460 6.3900 22 6 9.4397 -2.8524 6.8613 23 6 9.9136 -1.8061 6.0921 24 6 9.3653 -1.5598 4.8473 25 1 -0.5401 0.9352 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0921 29 1 2.6191 1.4039 -0.9325 30 1 4.1738 2.6902 2.2206 31 1 3.7919 3.1884 0.5550 32 1 3.6095 6.3203 2.4830 33 1 4.8685 1.0265 0.2242 34 1 3.8543 -0.4293 0.3683 35 1 4.1378 -0.3190 2.8632 36 1 5.2576 1.0464 2.6401 37 1 6.7258 -0.3853 1.2462 38 1 5.6060 -1.7507 1.4692 39 1 8.4941 -1.6509 2.3666 40 1 7.3749 -3.0169 2.5899 41 1 7.0559 -4.0173 4.7786 42 1 8.0381 -4.4612 6.9925 43 1 9.8706 -3.0472 7.8322 44 1 10.7145 -1.1832 6.4623 45 1 9.7385 -0.7451 4.2445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292222884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = -22.432142 kcal Electronic energy + Delta-G solvation = -21776.643418 eV Core-core repulsion = 18565.659300 eV Total energy + Delta-G solvation = -3210.984118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30208 -39.20804 -38.40924 -34.97589 -34.71547 -33.25940 -32.09394 -31.80168 -29.18542 -27.47234 -26.46448 -25.28392 -23.49069 -23.14943 -22.28319 -21.66832 -20.44064 -18.59938 -17.84663 -17.47082 -17.26884 -16.79945 -16.56066 -16.17961 -15.99026 -15.73522 -15.41150 -14.87920 -14.61110 -14.39999 -14.24414 -14.03850 -13.68870 -13.49739 -13.28923 -13.19517 -12.99143 -12.71100 -12.54780 -12.42915 -12.05665 -12.02173 -11.95207 -11.83307 -11.79935 -11.46781 -11.19332 -10.62583 -10.56786 -10.21860 -9.83480 -9.77108 -8.99502 -8.20888 -6.30329 0.32845 0.48748 1.39162 1.40466 1.49034 1.53987 2.39657 2.54905 3.06832 3.11871 3.49927 3.87231 3.90578 4.01085 4.10166 4.14264 4.26042 4.31335 4.32372 4.34085 4.40284 4.45659 4.49080 4.54707 4.64152 4.69370 4.71604 4.76009 4.93011 5.04081 5.06776 5.14325 5.16594 5.26501 5.27422 5.31238 5.53702 5.59463 5.65752 5.66216 5.78342 6.03425 6.07116 6.08789 6.26034 6.36034 6.65185 6.86162 7.39085 8.90472 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.002936 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.944146 B = 9533.089355 C =10790.657697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.144 4.144 3 C 0.084 3.916 4 N -0.541 5.541 5 C 0.208 3.792 6 C -0.521 4.521 7 H 0.061 0.939 8 C 0.001 3.999 9 N -0.934 5.934 10 Si 0.967 3.033 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.277 1.277 14 C 0.062 3.938 15 C -0.103 4.103 16 C 0.074 3.926 17 O -0.408 6.408 18 C 0.099 3.901 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.131 4.131 22 C -0.121 4.121 23 C -0.133 4.133 24 C -0.118 4.118 25 H 0.086 0.914 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.006 0.994 31 H -0.039 1.039 32 H 0.264 0.736 33 H 0.022 0.978 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.133 0.867 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.141 0.859 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.166 -19.665 1.826 21.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.163 4.163 3 C -0.044 4.044 4 N -0.265 5.265 5 C 0.082 3.918 6 C -0.559 4.559 7 H 0.079 0.921 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.792 3.208 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.203 1.203 14 C -0.066 4.066 15 C -0.141 4.141 16 C -0.003 4.003 17 O -0.328 6.328 18 C 0.023 3.977 19 C -0.111 4.111 20 C -0.131 4.131 21 C -0.149 4.149 22 C -0.139 4.139 23 C -0.151 4.151 24 C -0.136 4.136 25 H 0.104 0.896 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.024 0.976 31 H -0.022 1.022 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.151 0.849 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.159 0.841 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.957 -19.611 2.424 21.695 hybrid contribution 0.114 1.408 -0.577 1.526 sum 9.071 -18.203 1.847 20.421 Atomic orbital electron populations 1.23921 0.95625 1.02281 1.00703 1.22885 0.96246 0.97418 0.99711 1.21153 0.95382 0.96779 0.91064 1.62005 1.14626 1.11693 1.38218 1.19403 0.95379 0.83927 0.93095 1.21490 0.96085 0.95644 1.42703 0.92065 1.25906 0.99027 0.98775 0.95994 1.70096 1.25118 1.12641 1.49634 0.85364 0.79261 0.78291 0.77911 1.18716 1.20488 1.20257 1.21976 0.91386 0.97572 0.95635 1.21327 0.96571 0.98198 0.98054 1.22421 0.93923 0.98181 0.85756 1.87955 1.47887 1.65097 1.31854 1.21444 0.88723 0.93431 0.94053 1.19852 0.97287 0.97137 0.96783 1.21328 0.99395 0.97492 0.94876 1.21494 0.96883 1.00603 0.95884 1.21562 0.96770 0.95014 1.00584 1.21469 1.00850 0.98495 0.94288 1.21318 0.96601 0.98717 0.96980 0.89558 0.86148 0.86110 0.91838 0.94926 0.97553 1.02158 0.92731 0.95983 0.88817 0.91657 0.94434 0.92680 0.90843 0.91661 0.90781 0.84934 0.83691 0.83602 0.84117 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.23 14.32 67.79 0.97 -4.26 16 2 C -0.14 -4.46 9.33 25.65 0.24 -4.22 16 3 C 0.08 3.27 5.24 85.56 0.45 3.72 16 4 N -0.54 -23.83 4.35 -905.34 -3.93 -27.77 16 5 C 0.21 11.39 4.55 85.56 0.39 11.78 16 6 C -0.52 -30.26 8.23 25.60 0.21 -30.05 16 7 H 0.06 3.52 7.31 -2.91 -0.02 3.49 16 8 C 0.00 0.05 5.46 84.65 0.46 0.51 16 9 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 10 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 11 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 C 0.06 2.21 4.81 86.31 0.41 2.63 16 15 C -0.10 -3.63 5.62 30.59 0.17 -3.46 16 16 C 0.07 2.00 5.94 71.98 0.43 2.42 16 17 O -0.41 -12.17 10.33 -148.98 -1.54 -13.71 16 18 C 0.10 2.21 6.06 71.24 0.43 2.65 16 19 C -0.11 -2.55 5.51 -19.87 -0.11 -2.66 16 20 C -0.11 -2.32 9.70 22.27 0.22 -2.10 16 21 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 22 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 23 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 24 C -0.12 -2.61 9.70 22.27 0.22 -2.40 16 25 H 0.09 2.56 7.84 -2.91 -0.02 2.54 16 26 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 27 H 0.12 3.17 7.27 -2.91 -0.02 3.15 16 28 H 0.06 2.81 6.23 -2.38 -0.01 2.80 16 29 H 0.03 1.22 8.00 -2.39 -0.02 1.20 16 30 H 0.01 0.38 6.72 -2.39 -0.02 0.37 16 31 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 32 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.02 0.80 8.00 -2.39 -0.02 0.78 16 34 H 0.09 2.67 6.81 -2.38 -0.02 2.66 16 35 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.04 1.57 6.95 -2.39 -0.02 1.56 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 40 H 0.07 1.33 8.09 -2.38 -0.02 1.31 16 41 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 42 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 44 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -69.59 373.92 2.92 -66.67 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.93 Total: 16.26 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 5.16 Total: -31.62 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -3.65 Total: -84.90 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.54 Total: -13.71 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -69.59 2.92 -66.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292222884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.233 kcal (2) G-P(sol) polarization free energy of solvation -69.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds