Wall clock time and date at job start Tue Mar 31 2020 06:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50703 * 119.99953 * 2 1 4 4 N 1.46904 * 109.46954 * 125.39559 * 3 2 1 5 5 C 1.46904 * 110.99484 * 66.93472 * 4 3 2 6 6 C 1.50692 * 109.47313 * 66.04629 * 5 4 3 7 7 H 1.08004 * 120.00325 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00148 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00042 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00396 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47031 * 89.99861 * 10 8 6 12 12 H 1.48502 * 109.47330 * 210.00172 * 10 8 6 13 13 H 1.48498 * 109.47018 * 329.99789 * 10 8 6 14 14 C 1.46896 * 111.00200 * 302.97817 * 4 3 2 15 15 C 1.50694 * 109.47222 * 287.10424 * 14 4 3 16 16 C 1.38291 * 119.97094 * 276.15938 * 15 14 4 17 17 C 1.38242 * 120.11387 * 180.02562 * 16 15 14 18 18 C 1.38167 * 120.05360 * 359.67801 * 17 16 15 19 19 C 1.38711 * 119.94448 * 0.57764 * 18 17 16 20 20 O 1.35898 * 120.05764 * 179.72196 * 19 18 17 21 21 C 1.42901 * 116.99765 * 355.89780 * 20 19 18 22 22 C 1.53006 * 109.47200 * 156.68587 * 21 20 19 23 23 C 1.53001 * 109.47169 * 276.68428 * 21 20 19 24 24 C 1.38119 * 119.97589 * 96.14235 * 15 14 4 25 25 H 1.07999 * 120.00249 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99410 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00031 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46584 * 5.40002 * 3 2 1 29 29 H 1.09000 * 109.47053 * 245.39735 * 3 2 1 30 30 H 1.09002 * 109.46300 * 186.04498 * 5 4 3 31 31 H 1.08995 * 109.46944 * 306.04195 * 5 4 3 32 32 H 0.97002 * 120.00752 * 180.02562 * 9 8 6 33 33 H 1.08994 * 109.47033 * 167.10021 * 14 4 3 34 34 H 1.09000 * 109.47098 * 47.10188 * 14 4 3 35 35 H 1.07998 * 119.94133 * 359.97438 * 16 15 14 36 36 H 1.08003 * 119.97288 * 179.97438 * 17 16 15 37 37 H 1.08003 * 120.03045 * 180.30160 * 18 17 16 38 38 H 1.08995 * 109.47196 * 36.68640 * 21 20 19 39 39 H 1.09001 * 109.46905 * 59.99518 * 22 21 20 40 40 H 1.08992 * 109.47148 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47159 * 300.00148 * 22 21 20 42 42 H 1.08992 * 109.47447 * 180.02562 * 23 21 20 43 43 H 1.09001 * 109.46944 * 300.00487 * 23 21 20 44 44 H 1.08995 * 109.46915 * 59.99974 * 23 21 20 45 45 H 1.08006 * 120.02913 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0031 1.3281 1.1290 5 6 4.0671 0.3314 0.9487 6 6 4.9187 0.7141 -0.2342 7 1 4.6919 1.6081 -0.7962 8 6 5.9873 -0.0770 -0.5992 9 7 6.2637 -1.1654 0.0854 10 14 7.0424 0.3969 -2.0659 11 1 8.1590 1.2647 -1.6127 12 1 7.5932 -0.8296 -2.6965 13 1 6.2138 1.1324 -3.0547 14 6 2.3006 1.1236 2.4028 15 6 1.5221 2.3657 2.7521 16 6 2.1507 3.4174 3.3934 17 6 1.4392 4.5581 3.7157 18 6 0.0994 4.6526 3.3917 19 6 -0.5347 3.5969 2.7533 20 8 -1.8538 3.6851 2.4386 21 6 -2.5478 4.8558 2.8745 22 6 -3.7766 5.0790 1.9907 23 6 -2.9909 4.6746 4.3277 24 6 0.1816 2.4530 2.4313 25 1 -0.5400 0.9353 0.0004 26 1 -0.5399 -0.9353 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3591 2.1312 0.0967 29 1 2.6157 1.4059 -0.9344 30 1 4.6860 0.2945 1.8452 31 1 3.6217 -0.6480 0.7741 32 1 7.0157 -1.7219 -0.1711 33 1 3.0266 0.9167 3.1890 34 1 1.6164 0.2803 2.3091 35 1 3.1989 3.3472 3.6436 36 1 1.9322 5.3779 4.2169 37 1 -0.4549 5.5458 3.6394 38 1 -1.8861 5.7188 2.8014 39 1 -4.4383 4.2159 2.0638 40 1 -4.3062 5.9716 2.3234 41 1 -3.4610 5.2081 0.9554 42 1 -3.5207 5.5673 4.6600 43 1 -3.6526 3.8115 4.4008 44 1 -2.1156 4.5156 4.9573 45 1 -0.3090 1.6312 1.9306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292256479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:52 Heat of formation + Delta-G solvation = 6.489361 kcal Electronic energy + Delta-G solvation = -23038.408420 eV Core-core repulsion = 19828.678432 eV Total energy + Delta-G solvation = -3209.729988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.23618 -38.29411 -36.70761 -33.38542 -32.95059 -32.36010 -30.98338 -29.52990 -27.59288 -27.06821 -26.14950 -23.97880 -22.52959 -22.29077 -21.08607 -20.06032 -18.94644 -17.72145 -16.27663 -16.04349 -15.74745 -15.49048 -15.05377 -14.83714 -14.52633 -14.24993 -13.73525 -13.60690 -13.36808 -13.17364 -12.82498 -12.76638 -12.51058 -12.34328 -12.09959 -11.86874 -11.47842 -11.31307 -11.27910 -11.11518 -10.84326 -10.78573 -10.67727 -10.59802 -10.57621 -10.32409 -9.83607 -9.27431 -8.84530 -8.59142 -8.41353 -7.95293 -7.22300 -6.02010 -4.02888 1.54746 1.70453 2.76108 3.17798 3.33143 3.39134 3.42886 3.98017 4.44697 4.53185 4.67493 4.78968 5.00598 5.03520 5.20506 5.25162 5.28696 5.33750 5.39767 5.45854 5.49455 5.51653 5.63244 5.70026 5.72744 5.83828 5.87005 5.90347 5.99545 6.13161 6.21881 6.32712 6.45918 6.50092 6.66674 6.67943 6.96535 7.00781 7.11269 7.13833 7.37249 7.38342 7.57323 7.81133 8.08887 8.19751 8.54483 9.04513 9.61127 11.08722 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.003518 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.648931 B = 7957.162236 C = 8357.630340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.159 4.159 3 C 0.084 3.916 4 N -0.522 5.522 5 C 0.190 3.810 6 C -0.505 4.505 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.084 3.916 15 C -0.019 4.019 16 C -0.134 4.134 17 C -0.085 4.085 18 C -0.221 4.221 19 C 0.125 3.875 20 O -0.313 6.313 21 C 0.076 3.924 22 C -0.148 4.148 23 C -0.178 4.178 24 C -0.150 4.150 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.030 0.970 31 H -0.003 1.003 32 H 0.261 0.739 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.307 10.939 7.360 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.179 4.179 3 C -0.044 4.044 4 N -0.244 5.244 5 C 0.065 3.935 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.044 4.044 15 C -0.020 4.020 16 C -0.153 4.153 17 C -0.103 4.103 18 C -0.240 4.240 19 C 0.080 3.920 20 O -0.227 6.227 21 C 0.019 3.981 22 C -0.205 4.205 23 C -0.236 4.236 24 C -0.169 4.169 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.128 0.872 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.048 0.952 31 H 0.015 0.985 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.047 11.116 7.276 21.613 hybrid contribution 0.327 -0.488 -0.677 0.896 sum -16.720 10.628 6.599 20.883 Atomic orbital electron populations 1.23713 0.95973 1.00878 1.04703 1.23887 0.96236 1.01390 0.96339 1.21338 0.93966 0.92500 0.96621 1.62394 1.10788 1.52296 0.98913 1.19798 0.87820 0.88238 0.97637 1.21145 1.11757 1.08890 1.12565 0.91870 1.24966 0.97531 0.94989 0.97057 1.69953 1.29247 1.14510 1.40161 0.86520 0.80601 0.77769 0.82658 1.20660 1.21383 1.19858 1.21090 0.96345 0.92407 0.94517 1.19773 0.92121 0.96129 0.93991 1.20986 1.00110 0.93370 1.00850 1.20876 0.93321 0.97642 0.98473 1.21117 0.96606 0.99027 1.07203 1.18905 0.82804 0.94495 0.95809 1.86117 1.19712 1.42457 1.74449 1.22381 0.93675 0.87590 0.94430 1.21839 0.96263 1.02400 1.00014 1.22351 1.02480 1.02803 0.95956 1.20462 0.93998 0.97249 1.05226 0.88977 0.89461 0.87219 0.92048 0.89003 0.95230 0.98511 0.92959 0.90371 0.94089 0.85720 0.86259 0.86029 0.90932 0.91531 0.90741 0.91616 0.91284 0.91549 0.91807 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.34 13.21 29.01 0.38 -2.96 16 2 C -0.16 -2.90 7.35 -36.03 -0.26 -3.16 16 3 C 0.08 1.65 5.40 -4.97 -0.03 1.63 16 4 N -0.52 -11.11 4.64 -238.97 -1.11 -12.22 16 5 C 0.19 4.82 4.58 -4.98 -0.02 4.80 16 6 C -0.50 -13.96 8.42 -34.45 -0.29 -14.25 16 7 H 0.06 1.74 7.15 -52.48 -0.38 1.37 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 10 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.08 1.55 4.95 -4.98 -0.02 1.52 16 15 C -0.02 -0.32 4.92 -104.65 -0.51 -0.83 16 16 C -0.13 -2.06 9.72 -39.56 -0.38 -2.44 16 17 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 18 C -0.22 -2.84 8.38 -39.43 -0.33 -3.17 16 19 C 0.12 1.79 6.54 -39.22 -0.26 1.53 16 20 O -0.31 -4.15 9.81 -19.42 -0.19 -4.34 16 21 C 0.08 0.72 2.87 -26.73 -0.08 0.65 16 22 C -0.15 -1.13 9.56 37.16 0.36 -0.78 16 23 C -0.18 -1.47 9.28 37.16 0.34 -1.12 16 24 C -0.15 -2.36 8.60 -39.43 -0.34 -2.70 16 25 H 0.09 1.37 7.03 -52.49 -0.37 1.00 16 26 H 0.09 1.23 8.06 -52.49 -0.42 0.81 16 27 H 0.11 2.20 6.86 -52.49 -0.36 1.84 16 28 H 0.06 1.14 6.52 -51.93 -0.34 0.80 16 29 H 0.09 1.99 6.70 -51.93 -0.35 1.64 16 30 H 0.03 0.81 7.85 -51.93 -0.41 0.40 16 31 H 0.00 -0.08 6.47 -51.93 -0.34 -0.41 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.08 1.42 7.77 -51.93 -0.40 1.02 16 34 H 0.04 0.74 6.47 -51.93 -0.34 0.41 16 35 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.12 1.27 5.72 -52.48 -0.30 0.97 16 38 H 0.07 0.65 5.95 -51.93 -0.31 0.34 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.58 7.40 -51.93 -0.38 0.19 16 45 H 0.13 2.02 5.97 -52.48 -0.31 1.70 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -29.65 358.94 -9.22 -38.87 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.10 Total: 2.76 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -1.94 Total: -21.35 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.37 Total: -37.93 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.19 Total: -4.34 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.65 -9.22 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292256479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.360 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds