Wall clock time and date at job start Tue Mar 31 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00088 * 2 1 4 4 N 1.46897 * 109.47593 * 124.11975 * 3 2 1 5 5 C 1.46892 * 110.99954 * 298.68914 * 4 3 2 6 6 C 1.50701 * 109.47205 * 288.10779 * 5 4 3 7 7 H 1.07999 * 119.99918 * 354.70947 * 6 5 4 8 8 C 1.37883 * 120.00451 * 174.70480 * 6 5 4 9 9 N 1.31517 * 119.99477 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00011 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47109 * 60.00491 * 10 8 6 12 12 H 1.48500 * 109.46751 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47220 * 300.00273 * 10 8 6 14 14 C 1.46905 * 110.99508 * 62.63657 * 4 3 2 15 15 C 1.53004 * 109.47069 * 66.05082 * 14 4 3 16 16 H 1.08998 * 109.47097 * 305.00009 * 15 14 4 17 17 O 1.42903 * 109.46875 * 64.99371 * 15 14 4 18 18 C 1.52992 * 109.47141 * 184.99698 * 15 14 4 19 19 C 1.52998 * 109.47363 * 175.00189 * 18 15 14 20 20 C 1.50699 * 109.47577 * 180.02562 * 19 18 15 21 21 C 1.38236 * 120.00153 * 89.99640 * 20 19 18 22 22 C 1.38231 * 119.99788 * 180.02562 * 21 20 19 23 23 C 1.38236 * 120.00526 * 359.95214 * 22 21 20 24 24 C 1.38236 * 119.99319 * 0.28076 * 23 22 21 25 25 C 1.38231 * 119.99721 * 269.97770 * 20 19 18 26 26 H 1.08001 * 119.99861 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99843 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99861 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.47141 * 4.11724 * 3 2 1 30 30 H 1.08998 * 109.46958 * 244.12496 * 3 2 1 31 31 H 1.09003 * 109.47668 * 48.10820 * 5 4 3 32 32 H 1.09002 * 109.47593 * 168.11075 * 5 4 3 33 33 H 0.97001 * 119.99239 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47448 * 306.04836 * 14 4 3 35 35 H 1.09005 * 109.46686 * 186.04389 * 14 4 3 36 36 H 0.96701 * 114.00083 * 60.01004 * 17 15 14 37 37 H 1.08993 * 109.47322 * 54.99588 * 18 15 14 38 38 H 1.09005 * 109.47271 * 295.00104 * 18 15 14 39 39 H 1.09000 * 109.47381 * 59.99804 * 19 18 15 40 40 H 1.09005 * 109.46857 * 300.00167 * 19 18 15 41 41 H 1.08005 * 119.99863 * 359.97438 * 21 20 19 42 42 H 1.08009 * 119.99693 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.00148 * 180.02562 * 23 22 21 44 44 H 1.07998 * 119.99632 * 179.72663 * 24 23 22 45 45 H 1.08002 * 120.00593 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9812 1.3408 1.1465 5 6 2.2438 1.2525 2.4139 6 6 1.5128 2.5470 2.6610 7 1 1.6558 3.3838 1.9934 8 6 0.6615 2.6631 3.7394 9 7 0.4878 1.6442 4.5526 10 14 -0.2440 4.2680 4.0461 11 1 -1.1022 4.5835 2.8760 12 1 -1.0898 4.1350 5.2594 13 1 0.7406 5.3612 4.2470 14 6 3.9882 0.2757 1.0481 15 6 4.8968 0.5424 -0.1537 16 1 4.2888 0.6501 -1.0520 17 8 5.6377 1.7443 0.0668 18 6 5.8652 -0.6287 -0.3307 19 6 6.6887 -0.4217 -1.6034 20 6 7.6423 -1.5755 -1.7781 21 6 7.2509 -2.6939 -2.4901 22 6 8.1255 -3.7524 -2.6499 23 6 9.3917 -3.6923 -2.0984 24 6 9.7812 -2.5759 -1.3823 25 6 8.9084 -1.5153 -1.2266 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3575 2.1323 0.0738 30 1 2.6336 1.3955 -0.9246 31 1 1.5256 0.4343 2.3603 32 1 2.9434 1.0690 3.2294 33 1 -0.1109 1.7260 5.3115 34 1 3.4896 -0.6851 0.9205 35 1 4.5868 0.2565 1.9589 36 1 6.2024 1.7199 0.8514 37 1 5.3011 -1.5579 -0.4100 38 1 6.5328 -0.6813 0.5294 39 1 7.2529 0.5076 -1.5240 40 1 6.0212 -0.3690 -2.4635 41 1 6.2616 -2.7409 -2.9209 42 1 7.8195 -4.6264 -3.2059 43 1 10.0750 -4.5191 -2.2236 44 1 10.7689 -2.5307 -0.9477 45 1 9.2144 -0.6412 -0.6709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292263507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:53 Heat of formation + Delta-G solvation = -13.848331 kcal Electronic energy + Delta-G solvation = -22472.496708 eV Core-core repulsion = 19261.884812 eV Total energy + Delta-G solvation = -3210.611896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.53464 -38.31338 -36.26560 -33.84020 -32.79114 -32.05495 -31.06044 -30.40290 -28.00978 -26.59678 -25.01248 -23.28815 -22.74152 -21.33029 -21.00590 -20.67974 -18.78681 -16.93146 -16.31872 -16.08612 -15.78923 -15.35238 -15.27874 -14.78958 -14.48711 -14.27149 -13.98309 -13.69218 -13.54875 -13.21728 -12.94272 -12.84075 -12.28677 -12.14880 -12.00503 -11.37644 -11.28269 -11.21720 -11.08815 -10.96131 -10.82017 -10.72576 -10.62333 -10.52225 -10.29634 -10.00596 -9.65962 -9.13798 -9.10146 -8.77223 -8.70129 -8.37297 -7.14796 -5.97639 -3.98184 1.18788 1.22077 2.88982 3.36051 3.39807 3.43304 3.60528 4.40900 4.52529 4.66618 4.72627 4.82311 4.92451 4.98738 5.12278 5.18177 5.33878 5.36644 5.37476 5.44327 5.52804 5.56310 5.68424 5.71576 5.79597 5.83099 5.90897 5.96395 6.12117 6.17113 6.24215 6.29687 6.32883 6.40014 6.46598 6.54289 6.70562 6.84083 7.16350 7.27447 7.35440 7.46655 7.86526 8.01161 8.16217 8.24308 8.60143 9.10049 9.65509 11.12888 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027748 B = 0.002885 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.853330 B = 9704.500967 C =10101.286078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.183 4.183 3 C 0.088 3.912 4 N -0.519 5.519 5 C 0.190 3.810 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.021 3.979 15 C 0.112 3.888 16 H 0.095 0.905 17 O -0.548 6.548 18 C -0.144 4.144 19 C -0.078 4.078 20 C -0.076 4.076 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.118 4.118 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.004 0.996 32 H 0.020 0.980 33 H 0.260 0.740 34 H 0.032 0.968 35 H 0.068 0.932 36 H 0.369 0.631 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.389 -9.708 -13.340 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.203 4.203 3 C -0.040 4.040 4 N -0.241 5.241 5 C 0.065 3.935 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.108 4.108 15 C 0.052 3.948 16 H 0.113 0.887 17 O -0.352 6.352 18 C -0.182 4.182 19 C -0.115 4.115 20 C -0.076 4.076 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.138 4.138 25 C -0.136 4.136 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.022 0.978 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.215 0.785 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.234 -9.100 -13.699 21.751 hybrid contribution -0.755 -0.478 0.966 1.316 sum 13.479 -9.578 -12.733 20.870 Atomic orbital electron populations 1.23709 0.96074 1.01129 1.00732 1.23585 0.96744 0.99882 1.00090 1.21281 0.94634 0.94221 0.93822 1.62357 1.14684 1.43048 1.04019 1.19765 0.92132 0.97151 0.84415 1.21108 1.24140 0.98275 1.10420 0.92018 1.24971 0.96918 0.96539 0.96162 1.69955 1.37921 1.30393 1.15755 0.86602 0.79662 0.83971 0.77420 1.20329 1.21474 1.20203 1.22786 0.95677 0.94227 0.98158 1.21969 0.90846 0.83618 0.98353 0.88676 1.86571 1.61638 1.37469 1.49565 1.22290 0.98630 0.99701 0.97620 1.20576 0.96700 0.95888 0.98323 1.20045 0.94837 0.95922 0.96763 1.21101 0.99679 0.93524 0.99464 1.21145 0.94118 0.98546 0.99958 1.21122 0.96574 0.98304 0.98857 1.21152 0.99607 0.93926 0.99072 1.21104 0.93606 0.98902 1.00012 0.88439 0.89752 0.88744 0.89799 0.91989 0.97800 0.96203 0.93024 0.94994 0.91357 0.78494 0.91247 0.91550 0.90167 0.91080 0.86123 0.86269 0.86380 0.86241 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 14.32 29.01 0.42 -2.76 16 2 C -0.18 -3.31 7.46 -36.03 -0.27 -3.58 16 3 C 0.09 1.71 5.46 -4.98 -0.03 1.68 16 4 N -0.52 -10.97 4.61 -237.51 -1.09 -12.07 16 5 C 0.19 4.92 4.59 -4.98 -0.02 4.90 16 6 C -0.50 -14.11 8.50 -34.44 -0.29 -14.40 16 7 H 0.06 1.75 7.67 -52.49 -0.40 1.34 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 10 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.02 0.35 4.42 -3.82 -0.02 0.33 16 15 C 0.11 1.55 2.92 -26.73 -0.08 1.47 16 16 H 0.10 1.37 6.29 -51.93 -0.33 1.04 16 17 O -0.55 -8.16 12.82 -35.23 -0.45 -8.62 16 18 C -0.14 -1.60 4.87 -26.74 -0.13 -1.74 16 19 C -0.08 -0.80 5.24 -27.88 -0.15 -0.94 16 20 C -0.08 -0.78 5.13 -104.63 -0.54 -1.31 16 21 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 23 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 25 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 26 H 0.10 1.79 7.84 -52.49 -0.41 1.38 16 27 H 0.08 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.09 1.59 6.75 -52.49 -0.35 1.23 16 29 H 0.08 1.79 7.01 -51.93 -0.36 1.42 16 30 H 0.06 1.06 6.26 -51.93 -0.33 0.74 16 31 H 0.00 0.12 6.77 -51.93 -0.35 -0.24 16 32 H 0.02 0.55 7.81 -51.93 -0.41 0.15 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.03 0.54 6.27 -51.93 -0.33 0.21 16 35 H 0.07 1.18 7.86 -51.93 -0.41 0.77 16 36 H 0.37 4.46 9.05 45.56 0.41 4.87 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.84 7.77 -51.93 -0.40 0.44 16 40 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 41 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 42 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -31.29 367.87 -10.05 -41.34 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.60 Total: 5.54 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -3.16 Total: -22.46 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.36 Total: -38.21 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.45 Total: -8.62 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.29 -10.05 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292263507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.492 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds