Wall clock time and date at job start Tue Mar 31 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00088 * 2 1 4 4 N 1.46897 * 109.47593 * 124.11975 * 3 2 1 5 5 C 1.46892 * 110.99954 * 298.68914 * 4 3 2 6 6 C 1.50701 * 109.47205 * 288.10779 * 5 4 3 7 7 H 1.07999 * 119.99918 * 354.70947 * 6 5 4 8 8 C 1.37883 * 120.00451 * 174.70480 * 6 5 4 9 9 N 1.31517 * 119.99477 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00011 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47109 * 60.00491 * 10 8 6 12 12 H 1.48500 * 109.46751 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47220 * 300.00273 * 10 8 6 14 14 C 1.46905 * 110.99508 * 62.63657 * 4 3 2 15 15 C 1.53004 * 109.47069 * 66.05082 * 14 4 3 16 16 H 1.08998 * 109.47097 * 305.00009 * 15 14 4 17 17 O 1.42903 * 109.46875 * 64.99371 * 15 14 4 18 18 C 1.52992 * 109.47141 * 184.99698 * 15 14 4 19 19 C 1.52998 * 109.47363 * 175.00189 * 18 15 14 20 20 C 1.50699 * 109.47577 * 180.02562 * 19 18 15 21 21 C 1.38236 * 120.00153 * 89.99640 * 20 19 18 22 22 C 1.38231 * 119.99788 * 180.02562 * 21 20 19 23 23 C 1.38236 * 120.00526 * 359.95214 * 22 21 20 24 24 C 1.38236 * 119.99319 * 0.28076 * 23 22 21 25 25 C 1.38231 * 119.99721 * 269.97770 * 20 19 18 26 26 H 1.08001 * 119.99861 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99843 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99861 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.47141 * 4.11724 * 3 2 1 30 30 H 1.08998 * 109.46958 * 244.12496 * 3 2 1 31 31 H 1.09003 * 109.47668 * 48.10820 * 5 4 3 32 32 H 1.09002 * 109.47593 * 168.11075 * 5 4 3 33 33 H 0.97001 * 119.99239 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47448 * 306.04836 * 14 4 3 35 35 H 1.09005 * 109.46686 * 186.04389 * 14 4 3 36 36 H 0.96701 * 114.00083 * 60.01004 * 17 15 14 37 37 H 1.08993 * 109.47322 * 54.99588 * 18 15 14 38 38 H 1.09005 * 109.47271 * 295.00104 * 18 15 14 39 39 H 1.09000 * 109.47381 * 59.99804 * 19 18 15 40 40 H 1.09005 * 109.46857 * 300.00167 * 19 18 15 41 41 H 1.08005 * 119.99863 * 359.97438 * 21 20 19 42 42 H 1.08009 * 119.99693 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.00148 * 180.02562 * 23 22 21 44 44 H 1.07998 * 119.99632 * 179.72663 * 24 23 22 45 45 H 1.08002 * 120.00593 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9812 1.3408 1.1465 5 6 2.2438 1.2525 2.4139 6 6 1.5128 2.5470 2.6610 7 1 1.6558 3.3838 1.9934 8 6 0.6615 2.6631 3.7394 9 7 0.4878 1.6442 4.5526 10 14 -0.2440 4.2680 4.0461 11 1 -1.1022 4.5835 2.8760 12 1 -1.0898 4.1350 5.2594 13 1 0.7406 5.3612 4.2470 14 6 3.9882 0.2757 1.0481 15 6 4.8968 0.5424 -0.1537 16 1 4.2888 0.6501 -1.0520 17 8 5.6377 1.7443 0.0668 18 6 5.8652 -0.6287 -0.3307 19 6 6.6887 -0.4217 -1.6034 20 6 7.6423 -1.5755 -1.7781 21 6 7.2509 -2.6939 -2.4901 22 6 8.1255 -3.7524 -2.6499 23 6 9.3917 -3.6923 -2.0984 24 6 9.7812 -2.5759 -1.3823 25 6 8.9084 -1.5153 -1.2266 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3575 2.1323 0.0738 30 1 2.6336 1.3955 -0.9246 31 1 1.5256 0.4343 2.3603 32 1 2.9434 1.0690 3.2294 33 1 -0.1109 1.7260 5.3115 34 1 3.4896 -0.6851 0.9205 35 1 4.5868 0.2565 1.9589 36 1 6.2024 1.7199 0.8514 37 1 5.3011 -1.5579 -0.4100 38 1 6.5328 -0.6813 0.5294 39 1 7.2529 0.5076 -1.5240 40 1 6.0212 -0.3690 -2.4635 41 1 6.2616 -2.7409 -2.9209 42 1 7.8195 -4.6264 -3.2059 43 1 10.0750 -4.5191 -2.2236 44 1 10.7689 -2.5307 -0.9477 45 1 9.2144 -0.6412 -0.6709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292263507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:52 Heat of formation + Delta-G solvation = -33.026824 kcal Electronic energy + Delta-G solvation = -22473.328350 eV Core-core repulsion = 19261.884812 eV Total energy + Delta-G solvation = -3211.443538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.30866 -39.61942 -37.63792 -34.83174 -34.70487 -33.63032 -31.72486 -31.49590 -29.55889 -28.12316 -26.53043 -24.67333 -23.41320 -22.71236 -22.31837 -21.65268 -20.28779 -18.36654 -17.59570 -17.38622 -17.02584 -16.64989 -16.16122 -16.10255 -16.05351 -15.67198 -15.21526 -15.08653 -14.30794 -14.24562 -14.03641 -13.98709 -13.84476 -13.46338 -13.18695 -12.85476 -12.79014 -12.62004 -12.50957 -12.28607 -12.12792 -12.05448 -12.01193 -11.86366 -11.66698 -11.59966 -11.34311 -10.66426 -10.57476 -10.17377 -9.78288 -9.52740 -8.86361 -8.16100 -6.25095 0.49255 0.53872 1.40516 1.42989 1.44366 1.51030 2.41701 2.90325 3.15868 3.26196 3.73616 3.83564 3.94951 4.01930 4.07295 4.19868 4.23840 4.27716 4.31593 4.38839 4.43394 4.58742 4.65525 4.69254 4.72188 4.80284 4.89546 4.94626 4.98059 5.10792 5.17066 5.20695 5.23867 5.30964 5.35370 5.39078 5.62275 5.66490 5.68270 5.71726 5.79800 5.90864 6.13447 6.17718 6.41127 6.68537 6.91141 7.01260 7.43922 8.93607 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027748 B = 0.002885 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.853330 B = 9704.500967 C =10101.286078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.189 4.189 3 C 0.090 3.910 4 N -0.529 5.529 5 C 0.208 3.792 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.021 3.979 15 C 0.125 3.875 16 H 0.094 0.906 17 O -0.563 6.563 18 C -0.131 4.131 19 C -0.069 4.069 20 C -0.090 4.090 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.132 4.132 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.087 0.913 31 H -0.019 1.019 32 H -0.007 1.007 33 H 0.262 0.738 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.380 0.620 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.129 0.871 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.078 -10.104 -14.362 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.209 4.209 3 C -0.037 4.037 4 N -0.251 5.251 5 C 0.082 3.918 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.196 1.196 14 C -0.108 4.108 15 C 0.065 3.935 16 H 0.112 0.888 17 O -0.369 6.369 18 C -0.170 4.170 19 C -0.107 4.107 20 C -0.090 4.090 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.154 4.154 24 C -0.146 4.146 25 C -0.150 4.150 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.129 0.871 29 H 0.077 0.923 30 H 0.105 0.895 31 H -0.002 1.002 32 H 0.011 0.989 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.228 0.772 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.942 -9.498 -14.740 23.038 hybrid contribution -0.910 -0.400 1.262 1.607 sum 14.032 -9.898 -13.478 21.829 Atomic orbital electron populations 1.23864 0.96203 1.01709 1.00183 1.23604 0.96931 0.99811 1.00529 1.21236 0.94396 0.94125 0.93966 1.62241 1.15010 1.45201 1.02623 1.19372 0.91052 0.95392 0.86013 1.21389 1.24589 0.98963 1.10453 0.92622 1.25810 0.97716 0.99968 0.95832 1.70074 1.38646 1.32451 1.16261 0.85559 0.78502 0.79734 0.77575 1.19398 1.20889 1.19552 1.22901 0.95017 0.93237 0.99631 1.21839 0.90779 0.84448 0.96392 0.88837 1.86536 1.61910 1.38119 1.50372 1.22139 0.98080 0.98339 0.98415 1.20466 0.96570 0.95915 0.97729 1.20092 0.95146 0.96120 0.97643 1.21310 1.00382 0.93737 0.99664 1.21443 0.94199 0.98972 0.99973 1.21458 0.96894 0.98832 0.98256 1.21447 1.00352 0.93774 0.99019 1.21307 0.93765 0.99603 1.00313 0.89536 0.87589 0.87136 0.92345 0.89517 1.00175 0.98928 0.92879 0.94508 0.91962 0.77179 0.90889 0.91182 0.90530 0.90852 0.85346 0.84466 0.84323 0.84475 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.37 14.32 67.78 0.97 -5.40 16 2 C -0.19 -6.72 7.46 25.65 0.19 -6.53 16 3 C 0.09 3.48 5.46 85.56 0.47 3.95 16 4 N -0.53 -22.52 4.61 -905.36 -4.17 -26.69 16 5 C 0.21 11.03 4.59 85.56 0.39 11.42 16 6 C -0.52 -29.55 8.50 25.60 0.22 -29.33 16 7 H 0.06 3.19 7.67 -2.91 -0.02 3.17 16 8 C 0.00 0.26 5.46 84.66 0.46 0.72 16 9 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 10 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 14 C 0.02 0.70 4.42 86.30 0.38 1.08 16 15 C 0.12 3.32 2.92 30.59 0.09 3.41 16 16 H 0.09 2.54 6.29 -2.39 -0.02 2.52 16 17 O -0.56 -16.20 12.82 -148.98 -1.91 -18.11 16 18 C -0.13 -2.74 4.87 30.59 0.15 -2.59 16 19 C -0.07 -1.33 5.24 29.85 0.16 -1.18 16 20 C -0.09 -1.73 5.13 -19.87 -0.10 -1.84 16 21 C -0.13 -2.41 9.70 22.27 0.22 -2.20 16 22 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 23 C -0.14 -2.10 10.05 22.27 0.22 -1.88 16 24 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 25 C -0.13 -2.41 9.70 22.27 0.22 -2.20 16 26 H 0.09 3.20 7.84 -2.91 -0.02 3.17 16 27 H 0.11 3.22 8.06 -2.91 -0.02 3.19 16 28 H 0.11 3.56 6.75 -2.91 -0.02 3.54 16 29 H 0.06 2.53 7.01 -2.38 -0.02 2.51 16 30 H 0.09 2.88 6.26 -2.39 -0.01 2.86 16 31 H -0.02 -1.11 6.77 -2.39 -0.02 -1.13 16 32 H -0.01 -0.42 7.81 -2.39 -0.02 -0.44 16 33 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.04 1.21 6.27 -2.39 -0.01 1.20 16 35 H 0.06 2.16 7.86 -2.38 -0.02 2.14 16 36 H 0.38 8.87 9.05 -74.06 -0.67 8.20 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.08 1.52 7.77 -2.39 -0.02 1.50 16 40 H 0.07 1.36 8.09 -2.38 -0.02 1.34 16 41 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 42 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 43 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 44 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -66.90 367.87 0.99 -65.91 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.28 Total: 24.32 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 4.48 Total: -36.24 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -3.89 Total: -82.88 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -1.91 Total: -18.11 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -66.90 0.99 -65.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292263507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.879 kcal (2) G-P(sol) polarization free energy of solvation -66.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds